I5A
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| I | C5' | sing | 2.16Å | 2.14Å | |
| C6 | N1 | sing | 1.36Å | 1.35Å | |
| N1 | C2 | sing | 1.35Å | 1.34Å | |
| N1 | C1' | sing | 1.47Å | 1.48Å | |
| N3 | C2 | sing | 1.33Å | 1.36Å | |
| C2 | O2 | doub | 1.22Å | 1.26Å | |
| C4 | N3 | doub | 1.33Å | 1.34Å | |
| C5 | C4 | sing | 1.41Å | 1.40Å | |
| N4 | C4 | sing | 1.38Å | 1.33Å | |
| N4 | HN4 | sing | 0.97Å | 1.00Å | |
| N4 | HN4A | sing | 0.97Å | 1.00Å | |
| C5 | C6 | doub | 1.35Å | 1.40Å | |
| C5 | H5 | sing | 1.08Å | 1.08Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| C2' | C1' | sing | 1.54Å | 1.51Å | |
| C1' | O4' | sing | 1.44Å | 1.43Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C2' | O2' | sing | 1.43Å | 1.44Å | |
| C2' | C3' | sing | 1.54Å | 1.51Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | C4' | sing | 1.54Å | 1.53Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C5' | C4' | sing | 1.53Å | 1.54Å | |
| C4' | O4' | sing | 1.44Å | 1.44Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'A | sing | 1.09Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| I | C5' | C4' | 119.4° | 109.5° |
| I | C5' | H5' | 106.3° | 109.4° |
| I | C5' | H5'A | 106.3° | 109.5° |
| C6 | N1 | C2 | 120.3° | 120.3° |
| C6 | N1 | C1' | 122.9° | 119.8° |
| N1 | C6 | C5 | 120.4° | 119.3° |
| N1 | C6 | H6 | 119.8° | 120.4° |
| C2 | N1 | C1' | 116.8° | 119.9° |
| N1 | C2 | N3 | 121.0° | 121.1° |
| N1 | C2 | O2 | 119.0° | 119.4° |
| N1 | C1' | C2' | 108.4° | 110.4° |
| N1 | C1' | O4' | 115.1° | 110.3° |
| N1 | C1' | H1' | 105.8° | 110.4° |
| N3 | C2 | O2 | 120.0° | 119.5° |
| C2 | N3 | C4 | 120.6° | 120.7° |
| N3 | C4 | C5 | 120.2° | 119.7° |
| N3 | C4 | N4 | 118.5° | 120.2° |
| C5 | C4 | N4 | 121.3° | 120.2° |
| C4 | C5 | C6 | 117.6° | 118.9° |
| C4 | C5 | H5 | 121.2° | 120.5° |
| C4 | N4 | HN4 | 120.0° | 120.0° |
| C4 | N4 | HN4A | 120.0° | 120.0° |
| HN4 | N4 | HN4A | 120.0° | 119.9° |
| C6 | C5 | H5 | 121.2° | 120.5° |
| C5 | C6 | H6 | 119.8° | 120.3° |
| C2' | C1' | O4' | 107.7° | 104.8° |
| C2' | C1' | H1' | 113.4° | 110.5° |
| C1' | C2' | O2' | 110.0° | 110.5° |
| C1' | C2' | C3' | 105.1° | 104.1° |
| C1' | C2' | H2' | 113.7° | 110.5° |
| O4' | C1' | H1' | 106.5° | 110.4° |
| C1' | O4' | C4' | 113.7° | 105.3° |
| O2' | C2' | C3' | 114.1° | 110.5° |
| O2' | C2' | H2' | 104.6° | 110.5° |
| C2' | O2' | HO2' | 109.5° | 114.1° |
| C3' | C2' | H2' | 109.6° | 110.6° |
| C2' | C3' | O3' | 106.0° | 110.5° |
| C2' | C3' | C4' | 108.8° | 104.1° |
| C2' | C3' | H3' | 112.3° | 110.5° |
| O3' | C3' | C4' | 109.7° | 110.5° |
| O3' | C3' | H3' | 111.3° | 110.4° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C4' | C3' | H3' | 108.7° | 110.6° |
| C3' | C4' | C5' | 120.5° | 110.4° |
| C3' | C4' | O4' | 104.4° | 104.8° |
| C3' | C4' | H4' | 103.1° | 110.4° |
| C5' | C4' | O4' | 99.9° | 110.4° |
| C5' | C4' | H4' | 107.5° | 110.4° |
| C4' | C5' | H5' | 106.3° | 109.5° |
| C4' | C5' | H5'A | 106.3° | 109.5° |
| O4' | C4' | H4' | 122.8° | 110.4° |
| H5' | C5' | H5'A | 112.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| I | C5' | C4' | C3' | 7.7° | 175.0° |
| I | C5' | C4' | H5' | 120.0° | 120.0° |
| I | C5' | C4' | H5'A | 120.0° | 120.0° |
| I | C5' | C4' | O4' | 105.6° | 69.6° |
| I | C5' | C4' | H4' | 125.2° | 52.7° |
| I | C5' | H5' | H5'A | 115.9° | 120.0° |
| C6 | N1 | C2 | C1' | 179.1° | 179.7° |
| C6 | N1 | C2 | N3 | 0.3° | 0.3° |
| C6 | N1 | C2 | O2 | 179.7° | 179.7° |
| N1 | C6 | C5 | C4 | 0.5° | 0.6° |
| N1 | C6 | C5 | H6 | 180.0° | 179.5° |
| N1 | C6 | C5 | H5 | 179.5° | 179.7° |
| C6 | N1 | C1' | C2' | 51.2° | 117.9° |
| C6 | N1 | C1' | O4' | 69.4° | 126.8° |
| C6 | N1 | C1' | H1' | 173.2° | 4.5° |
| N1 | C2 | N3 | O2 | 179.4° | 180.0° |
| N1 | C2 | N3 | C4 | 0.7° | 0.0° |
| C2 | N1 | C6 | C5 | 0.2° | 0.6° |
| C2 | N1 | C6 | H6 | 179.8° | 179.9° |
| C2 | N1 | C1' | C2' | 127.8° | 61.8° |
| C2 | N1 | C1' | O4' | 111.5° | 53.6° |
| C2 | N1 | C1' | H1' | 5.8° | 175.8° |
| C1' | N1 | C2 | N3 | 178.8° | 179.9° |
| C1' | N1 | C2 | O2 | 0.6° | 0.1° |
| C1' | N1 | C6 | C5 | 178.9° | 179.8° |
| C1' | N1 | C6 | H6 | 1.1° | 0.2° |
| N1 | C1' | C2' | O4' | 125.1° | 118.7° |
| N1 | C1' | C2' | H1' | 117.2° | 122.4° |
| N1 | C1' | O4' | H1' | 116.9° | 122.2° |
| N1 | C1' | C2' | O2' | 105.9° | 98.6° |
| N1 | C1' | C2' | C3' | 130.9° | 142.8° |
| N1 | C1' | C2' | H2' | 11.0° | 24.0° |
| N1 | C1' | O4' | C4' | 126.5° | 159.3° |
| C2 | N3 | C4 | C5 | 1.0° | 0.0° |
| C2 | N3 | C4 | N4 | 180.0° | 180.0° |
| O2 | C2 | N3 | C4 | 179.9° | 180.0° |
| N3 | C4 | C5 | N4 | 179.0° | 180.0° |
| N3 | C4 | N4 | HN4 | 0.0° | 0.1° |
| N3 | C4 | N4 | HN4A | 180.0° | 180.0° |
| N3 | C4 | C5 | C6 | 0.9° | 0.3° |
| N3 | C4 | C5 | H5 | 179.2° | 180.0° |
| C5 | C4 | N4 | HN4 | 179.1° | 180.0° |
| C5 | C4 | N4 | HN4A | 0.9° | 0.0° |
| C4 | C5 | C6 | H5 | 180.0° | 179.7° |
| C4 | C5 | C6 | H6 | 179.5° | 179.9° |
| C4 | N4 | HN4 | HN4A | 180.0° | 179.9° |
| N4 | C4 | C5 | C6 | 179.9° | 179.7° |
| N4 | C4 | C5 | H5 | 0.1° | 0.0° |
| H5 | C5 | C6 | H6 | 0.5° | 0.2° |
| C2' | C1' | O4' | H1' | 122.0° | 119.0° |
| C1' | C2' | O2' | C3' | 117.7° | 114.7° |
| C1' | C2' | O2' | H2' | 122.5° | 122.6° |
| C1' | C2' | C3' | H2' | 122.5° | 118.7° |
| C1' | C2' | O2' | HO2' | 180.0° | 180.0° |
| C1' | C2' | C3' | O3' | 113.6° | 118.6° |
| C1' | C2' | C3' | C4' | 4.3° | 0.0° |
| C1' | C2' | C3' | H3' | 124.6° | 118.8° |
| C2' | C1' | O4' | C4' | 5.4° | 40.6° |
| O4' | C1' | C2' | O2' | 128.9° | 142.7° |
| O4' | C1' | C2' | C3' | 5.8° | 24.0° |
| O4' | C1' | C2' | H2' | 114.1° | 94.7° |
| C1' | O4' | C4' | C3' | 2.6° | 40.5° |
| C1' | O4' | C4' | C5' | 127.9° | 159.4° |
| C1' | O4' | C4' | H4' | 113.8° | 78.3° |
| H1' | C1' | C2' | O2' | 11.3° | 23.8° |
| H1' | C1' | C2' | C3' | 111.9° | 94.9° |
| H1' | C1' | C2' | H2' | 128.2° | 146.4° |
| H1' | C1' | O4' | C4' | 116.6° | 78.4° |
| O2' | C2' | C3' | H2' | 116.9° | 122.6° |
| O2' | C2' | C3' | O3' | 6.9° | 0.0° |
| O2' | C2' | C3' | C4' | 124.8° | 118.7° |
| O2' | C2' | C3' | H3' | 114.9° | 122.6° |
| C3' | C2' | O2' | HO2' | 62.2° | 65.3° |
| C2' | C3' | O3' | C4' | 117.3° | 114.7° |
| C2' | C3' | O3' | H3' | 122.3° | 122.6° |
| C2' | C3' | C4' | H3' | 122.5° | 118.7° |
| C2' | C3' | O3' | HO3' | 180.0° | 180.0° |
| C2' | C3' | C4' | C5' | 109.7° | 142.8° |
| C2' | C3' | C4' | O4' | 1.2° | 24.0° |
| C2' | C3' | C4' | H4' | 130.6° | 94.9° |
| H2' | C2' | O2' | HO2' | 57.5° | 57.4° |
| H2' | C2' | C3' | O3' | 123.8° | 122.6° |
| H2' | C2' | C3' | C4' | 118.3° | 118.7° |
| H2' | C2' | C3' | H3' | 2.1° | 0.1° |
| O3' | C3' | C4' | H3' | 122.0° | 122.6° |
| O3' | C3' | C4' | C5' | 134.8° | 98.5° |
| O3' | C3' | C4' | O4' | 114.3° | 142.6° |
| O3' | C3' | C4' | H4' | 15.1° | 23.8° |
| C4' | C3' | O3' | HO3' | 62.7° | 65.3° |
| C3' | C4' | C5' | O4' | 113.3° | 115.4° |
| C3' | C4' | C5' | H4' | 117.5° | 122.3° |
| C3' | C4' | O4' | H4' | 116.4° | 118.8° |
| C3' | C4' | C5' | H5' | 112.3° | 65.0° |
| C3' | C4' | C5' | H5'A | 127.7° | 55.0° |
| H3' | C3' | O3' | HO3' | 57.7° | 57.4° |
| H3' | C3' | C4' | C5' | 12.8° | 24.1° |
| H3' | C3' | C4' | O4' | 123.7° | 94.7° |
| H3' | C3' | C4' | H4' | 106.9° | 146.4° |
| C5' | C4' | O4' | H4' | 118.3° | 122.3° |
| C4' | C5' | H5' | H5'A | 116.0° | 120.0° |
| O4' | C4' | C5' | H5' | 134.4° | 50.4° |
| O4' | C4' | C5' | H5'A | 14.3° | 170.4° |
| H4' | C4' | C5' | H5' | 5.2° | 172.7° |
| H4' | C4' | C5' | H5'A | 114.8° | 67.3° |
