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I2C

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O8C8doub1.21Å1.25Å
C8C7sing1.51Å1.53Å
N1C2doub1.32Å1.35ÅAromatic
N1C6sing1.32Å1.35ÅAromatic
C2O2sing1.36Å1.35Å
C2C3sing1.39Å1.41ÅAromatic
C3C3Msing1.51Å1.51Å
C3C4doub1.39Å1.39ÅAromatic
C7C6sing1.51Å1.53Å
C6C5doub1.38Å1.42ÅAromatic
C5C5Msing1.51Å1.52Å
C5C4sing1.40Å1.39ÅAromatic
C4O3Psing1.36Å1.38Å
O3PP1sing1.61Å1.57Å
P1O2Psing1.61Å1.51Å
P1O1Pdoub1.48Å1.50Å
P1O5'sing1.61Å1.58Å
O5'C5'sing1.43Å1.45Å
C5'C4'sing1.53Å1.52Å
C4'O4'sing1.44Å1.44Å
C4'C3'sing1.54Å1.52Å
O4'C1'sing1.44Å1.42Å
C3'O3'sing1.43Å1.46Å
C3'C2'sing1.55Å1.53Å
C2'O2'sing1.43Å1.42Å
C2'C1'sing1.55Å1.52Å
C1'N9Asing1.46Å1.49Å
N9AC4Asing1.37Å1.33ÅAromatic
N9AC8Asing1.36Å1.37ÅAromatic
C4AN3Asing1.34Å1.37Å
C4AC5Adoub1.40Å1.40ÅAromatic
N3AC2Adoub1.31Å1.37Å
C2AN2Asing1.37Å1.35Å
C2AN1Asing1.36Å1.36Å
N1AC6Asing1.35Å1.35Å
C8AN7Adoub1.30Å1.36ÅAromatic
N7AC5Asing1.36Å1.37ÅAromatic
C5AC6Asing1.41Å1.38Å
C6AO6Adoub1.22Å1.27Å
C8H8sing1.08Å1.08Å
O2HO2sing0.97Å0.95Å
C3MH3Msing1.09Å1.10Å
C3MH3MAsing1.09Å1.10Å
C3MH3MBsing1.09Å1.10Å
C7H7sing1.09Å1.10Å
C7H7Asing1.09Å1.10Å
C5MH5Msing1.09Å1.10Å
C5MH5MAsing1.09Å1.10Å
C5MH5MBsing1.09Å1.10Å
O2PHO2Psing0.97Å0.95Å
C5'H5'sing1.09Å1.10Å
C5'H5'Asing1.09Å1.10Å
C4'H4'sing1.09Å1.10Å
C3'H3'sing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
C2'H2'sing1.09Å1.10Å
O2'HO2'sing0.97Å0.95Å
C1'H1'sing1.09Å1.10Å
N2AHN2Asing0.97Å1.00Å
N2AHN2Bsing0.97Å1.00Å
N1AHN1Asing0.97Å1.00Å
C8AH8Asing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O8C8C7117.2°120.0°
O8C8H8121.4°120.0°
C8C7C6106.8°109.5°
C7C8H8121.4°120.0°
C8C7H7110.4°109.5°
C8C7H7A110.9°109.5°
C2N1C6119.8°121.8°
N1C2O2122.0°119.7°
N1C2C3121.4°120.6°
N1C6C7117.5°119.6°
N1C6C5121.0°120.9°
O2C2C3116.5°119.7°
C2O2HO2109.5°114.0°
C2C3C3M120.7°120.4°
C2C3C4119.3°119.1°
C3MC3C4119.9°120.5°
C3C3MH3M109.5°109.4°
C3C3MH3MA109.5°109.5°
C3C3MH3MB109.4°109.5°
C3C4C5118.8°118.4°
C3C4O3P118.7°120.9°
C7C6C5121.5°119.5°
C6C7H7110.4°109.5°
C6C7H7A111.0°109.4°
C6C5C5M120.4°120.4°
C6C5C4119.4°119.2°
C5MC5C4120.2°120.4°
C5C5MH5M109.5°109.5°
C5C5MH5MA109.5°109.5°
C5C5MH5MB109.4°109.5°
C5C4O3P122.2°120.8°
C4O3PP1128.8°114.0°
O3PP1O2P107.1°109.5°
O3PP1O1P108.7°109.5°
O3PP1O5'99.7°109.5°
O2PP1O1P121.4°109.4°
O2PP1O5'107.3°109.4°
P1O2PHO2P109.5°114.0°
O1PP1O5'110.5°109.5°
P1O5'C5'119.9°123.0°
O5'C5'C4'109.7°109.5°
O5'C5'H5'109.4°109.5°
O5'C5'H5'A109.3°109.4°
C5'C4'O4'111.0°109.8°
C5'C4'C3'113.2°109.9°
C4'C5'H5'109.4°109.5°
C4'C5'H5'A109.3°109.5°
C5'C4'H4'105.1°109.9°
O4'C4'C3'107.4°107.3°
C4'O4'C1'106.1°107.0°
O4'C4'H4'111.2°109.9°
C4'C3'O3'110.4°110.5°
C4'C3'C2'103.6°104.2°
C3'C4'H4'108.9°110.0°
C4'C3'H3'114.1°110.5°
O4'C1'C2'104.3°103.5°
O4'C1'N9A111.5°110.6°
O4'C1'H1'113.9°110.6°
O3'C3'C2'113.4°110.5°
O3'C3'H3'104.4°110.4°
C3'O3'HO3'109.5°114.0°
C3'C2'O2'111.7°110.9°
C3'C2'C1'100.4°102.1°
C2'C3'H3'111.1°110.6°
C3'C2'H2'116.1°110.9°
O2'C2'C1'115.3°110.9°
O2'C2'H2'101.5°110.8°
C2'O2'HO2'109.5°114.0°
C2'C1'N9A115.6°110.6°
C1'C2'H2'112.5°110.9°
C2'C1'H1'109.7°110.6°
C1'N9AC4A119.2°126.3°
C1'N9AC8A130.3°126.2°
N9AC1'H1'102.2°110.7°
C4AN9AC8A110.4°107.5°
N9AC4AN3A131.6°134.2°
N9AC4AC5A106.6°106.1°
N9AC8AN7A107.1°109.8°
N9AC8AH8A126.4°125.1°
N3AC4AC5A121.8°119.7°
C4AN3AC2A118.4°121.1°
C4AC5AN7A107.9°107.2°
C4AC5AC6A117.8°118.6°
N3AC2AN2A121.0°119.0°
N3AC2AN1A120.1°121.9°
N2AC2AN1A118.9°119.0°
C2AN2AHN2A110.1°120.0°
C2AN2AHN2B124.9°120.1°
C2AN1AC6A122.1°120.3°
C2AN1AHN1A118.9°119.8°
N1AC6AC5A119.8°118.4°
N1AC6AO6A119.9°120.8°
C6AN1AHN1A119.0°119.8°
C8AN7AC5A108.0°109.4°
N7AC8AH8A126.4°125.1°
N7AC5AC6A134.3°134.1°
C5AC6AO6A120.3°120.8°
H3MC3MH3MA109.4°109.5°
H3MC3MH3MB109.5°109.5°
H3MAC3MH3MB109.5°109.5°
H7C7H7A107.4°109.4°
H5MC5MH5MA109.4°109.4°
H5MC5MH5MB109.5°109.5°
H5MAC5MH5MB109.5°109.5°
H5'C5'H5'A109.7°109.5°
HN2AN2AHN2B125.0°119.9°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O8C8C7H8180.0°179.7°
O8C8C7C6174.4°125.0°
O8C8C7H754.3°115.0°
O8C8C7H7A64.6°5.0°
C8C7C6N12.0°90.0°
C8C7C6H7120.0°120.1°
C8C7C6H7A121.0°120.0°
C8C7C6C5176.7°89.9°
C8C7H7H7A121.1°120.0°
N1C2O2C3177.6°180.0°
N1C2C3C3M177.2°180.0°
N1C2C3C46.2°0.0°
C2N1C6C7176.6°180.0°
C2N1C6C52.1°0.1°
N1C2O2HO2163.4°90.0°
C6N1C2O2177.0°180.0°
C6N1C2C35.5°0.0°
N1C6C7C5178.8°179.9°
N1C6C5C5M179.7°179.9°
N1C6C5C40.4°0.0°
N1C6C7H7122.0°30.1°
N1C6C7H7A119.0°150.0°
O2C2C3C3M0.5°0.1°
O2C2C3C4176.2°180.0°
C2C3C3MC4176.7°180.0°
C2C3C4C53.5°0.0°
C2C3C4O3P177.9°180.0°
C3C2O2HO219.0°90.0°
C2C3C3MH3M156.3°90.0°
C2C3C3MH3MA83.7°150.0°
C2C3C3MH3MB36.3°30.0°
C3MC3C4C5179.8°179.9°
C3MC3C4O3P5.4°0.1°
C3C3MH3MH3MA120.0°120.0°
C3C3MH3MH3MB120.0°120.0°
C3C3MH3MAH3MB120.0°120.0°
C3C4C5C60.3°0.0°
C3C4C5C5M178.9°180.0°
C3C4C5O3P174.2°180.0°
C3C4O3PP173.8°84.7°
C4C3C3MH3M20.3°90.0°
C4C3C3MH3MA99.6°30.0°
C4C3C3MH3MB140.3°150.0°
C7C6C5C5M1.6°0.0°
C7C6C5C4179.1°180.0°
C6C7C8H85.6°54.7°
C6C7H7H7A121.1°119.9°
C6C5C5MC4179.2°180.0°
C6C5C4O3P174.5°180.0°
C5C6C7H756.7°150.0°
C5C6C7H7A62.2°30.1°
C6C5C5MH5M16.5°83.6°
C6C5C5MH5MA136.5°156.5°
C6C5C5MH5MB103.5°36.4°
C5MC5C4O3P4.7°0.0°
C5C5MH5MH5MA120.0°120.0°
C5C5MH5MH5MB120.0°120.0°
C5C5MH5MAH5MB120.0°120.0°
C5C4O3PP1112.0°95.3°
C4C5C5MH5M162.8°96.4°
C4C5C5MH5MA42.8°23.6°
C4C5C5MH5MB77.2°143.6°
C4O3PP1O2P17.1°65.6°
C4O3PP1O1P149.8°54.4°
C4O3PP1O5'94.6°174.4°
O3PP1O2PO1P125.4°120.1°
O3PP1O2PO5'106.3°120.0°
O3PP1O1PO5'108.4°120.1°
O3PP1O5'C5'85.6°175.0°
O3PP1O2PHO2P11.1°59.5°
O2PP1O1PO5'126.9°119.9°
O2PP1O5'C5'163.0°65.0°
O1PP1O5'C5'28.7°54.9°
O1PP1O2PHO2P136.5°179.5°
P1O5'C5'C4'130.0°180.0°
O5'P1O2PHO2P95.3°60.6°
P1O5'C5'H5'110.0°60.0°
P1O5'C5'H5'A10.1°60.0°
O5'C5'C4'H5'120.0°120.0°
O5'C5'C4'H5'A119.9°119.9°
O5'C5'C4'O4'162.2°66.5°
O5'C5'C4'C3'76.9°175.7°
O5'C5'H5'H5'A119.9°120.0°
O5'C5'C4'H4'41.9°54.5°
C5'C4'O4'C3'124.3°119.4°
C5'C4'O4'H4'116.6°121.0°
C5'C4'C3'H4'116.5°121.1°
C5'C4'O4'C1'144.1°145.9°
C5'C4'C3'O3'122.6°119.9°
C5'C4'C3'C2'115.7°121.4°
C4'C5'H5'H5'A119.9°120.0°
C5'C4'C3'H3'5.3°2.6°
O4'C4'C3'H4'120.5°119.5°
O4'C4'C3'O3'114.5°120.7°
O4'C4'C3'C2'7.3°2.1°
C4'O4'C1'C2'39.3°40.1°
C4'O4'C1'N9A164.7°158.6°
O4'C4'C5'H5'42.2°53.5°
O4'C4'C5'H5'A77.9°173.6°
O4'C4'C3'H3'128.2°116.7°
C4'O4'C1'H1'80.2°78.4°
C3'C4'O4'C1'19.9°26.5°
C4'C3'O3'C2'115.8°114.8°
C4'C3'O3'H3'123.1°122.6°
C4'C3'C2'H3'123.0°118.8°
C4'C3'C2'O2'151.8°139.1°
C4'C3'C2'C1'29.1°20.9°
C3'C4'C5'H5'163.1°64.3°
C3'C4'C5'H5'A43.0°55.8°
C4'C3'O3'HO3'30.3°180.0°
C4'C3'C2'H2'92.5°97.3°
O4'C1'C2'C3'42.5°37.0°
O4'C1'C2'O2'162.7°155.2°
O4'C1'C2'N9A122.7°118.5°
O4'C1'C2'H1'122.4°118.5°
O4'C1'N9AH1'122.1°123.0°
O4'C1'N9AC4A92.5°156.4°
O4'C1'N9AC8A91.3°23.2°
C1'O4'C4'H4'99.2°93.1°
O4'C1'C2'H2'81.6°81.2°
O3'C3'C2'H3'117.3°122.5°
O3'C3'C2'O2'32.1°20.4°
O3'C3'C2'C1'90.7°97.8°
O3'C3'C4'H4'6.0°1.2°
O3'C3'C2'H2'147.7°144.0°
C3'C2'O2'C1'113.8°112.7°
C3'C2'O2'H2'124.3°123.6°
C3'C2'C1'H2'124.1°118.2°
C3'C2'C1'N9A165.2°155.5°
C2'C3'C4'H4'127.8°117.5°
C2'C3'O3'HO3'146.1°65.2°
C3'C2'O2'HO2'34.4°61.5°
C3'C2'C1'H1'79.9°81.5°
O2'C2'C1'H2'115.7°123.6°
O2'C2'C1'N9A74.6°86.3°
O2'C2'C3'H3'85.2°102.1°
O2'C2'C1'H1'40.3°36.7°
C2'C1'N9AH1'119.1°123.0°
C2'C1'N9AC4A148.7°89.5°
C2'C1'N9AC8A27.6°90.9°
C1'C2'C3'H3'152.1°139.7°
C1'C2'O2'HO2'79.4°174.2°
C1'N9AC4AC8A177.0°179.7°
C1'N9AC4AN3A0.9°0.0°
C1'N9AC4AC5A177.9°180.0°
C1'N9AC8AN7A178.1°180.0°
N9AC1'C2'H2'41.2°37.3°
C1'N9AC8AH8A1.9°0.1°
N9AC4AN3AC5A178.6°180.0°
N9AC4AN3AC2A179.9°180.0°
C4AN9AC8AN7A1.6°0.3°
N9AC4AC5AN7A0.1°0.1°
N9AC4AC5AC6A179.2°179.9°
C4AN9AC1'H1'29.6°33.5°
C4AN9AC8AH8A178.4°179.8°
C8AN9AC4AN3A177.9°179.7°
C8AN9AC4AC5A0.9°0.3°
N9AC8AN7AH8A180.0°179.9°
N9AC8AN7AC5A1.6°0.2°
C8AN9AC1'H1'146.6°146.2°
C4AN3AC2AN2A178.8°180.0°
C4AN3AC2AN1A1.1°0.0°
N3AC4AC5AN7A179.1°179.8°
N3AC4AC5AC6A0.3°0.1°
C5AC4AN3AC2A1.2°0.0°
C4AC5AC6AN1A0.7°0.1°
C4AC5AN7AC8A1.1°0.0°
C4AC5AN7AC6A179.2°179.9°
C4AC5AC6AO6A179.5°180.0°
N3AC2AN2AN1A179.9°180.0°
N3AC2AN1AC6A0.1°0.0°
N3AC2AN2AHN2A180.0°0.0°
N3AC2AN2AHN2B0.0°180.0°
N3AC2AN1AHN1A179.9°180.0°
N2AC2AN1AC6A179.8°180.0°
C2AN2AHN2AHN2B180.0°180.0°
N2AC2AN1AHN1A0.2°0.1°
C2AN1AC6AHN1A180.0°179.9°
C2AN1AC6AC5A0.8°0.1°
C2AN1AC6AO6A179.3°179.9°
N1AC2AN2AHN2A0.1°180.0°
N1AC2AN2AHN2B179.9°0.0°
N1AC6AC5AN7A179.9°179.8°
N1AC6AC5AO6A179.8°179.8°
C8AN7AC5AC6A178.1°179.9°
N7AC5AC6AO6A0.3°0.1°
C5AN7AC8AH8A178.4°179.9°
C5AC6AN1AHN1A179.2°180.0°
O6AC6AN1AHN1A0.6°0.1°
H8C8C7H7125.6°65.3°
H8C8C7H7A115.4°174.7°
H3MC3MH3MAH3MB120.0°120.0°
H5MC5MH5MAH5MB120.0°120.0°
H5'C5'C4'H4'78.1°174.5°
H5'AC5'C4'H4'161.8°65.4°
H4'C4'C3'H3'111.2°123.7°
H3'C3'O3'HO3'92.8°57.4°
H3'C3'C2'H2'30.5°21.4°
H2'C2'O2'HO2'158.7°62.1°
H2'C2'C1'H1'156.0°160.3°

220113

PDB entries from 2024-05-22

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