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HYH

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
NC5sing1.35Å1.30Å
C5O1doub1.21Å1.23Å
C5C4sing1.51Å1.53Å
C3C4sing1.53Å1.52Å
C3C2sing1.53Å1.55Å
C1C2sing1.53Å1.48Å
C1Csing1.53Å1.52Å
C4Osing1.43Å1.47Å
NH1sing0.97Å1.00Å
NH2sing0.97Å1.00Å
C4H3sing1.09Å1.10Å
OH4sing0.97Å0.95Å
C3H5sing1.09Å1.10Å
C3H6sing1.09Å1.10Å
C2H7sing1.09Å1.10Å
C2H8sing1.09Å1.10Å
C1H9sing1.09Å1.10Å
C1H10sing1.09Å1.10Å
CH11sing1.09Å1.10Å
CH12sing1.09Å1.10Å
CH13sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
NC5O1114.1°120.0°
NC5C4125.6°120.0°
C5NH1120.0°120.0°
C5NH2120.0°120.0°
O1C5C4120.3°120.0°
C5C4C3104.6°109.5°
C5C4O112.6°109.5°
C5C4H3105.6°109.5°
C4C3C2114.3°109.5°
C3C4O121.0°109.5°
C3C4H3105.6°109.5°
C4C3H5108.2°109.4°
C4C3H6108.3°109.5°
C3C2C1113.3°109.4°
C2C3H5108.2°109.5°
C2C3H6108.2°109.5°
C3C2H7108.5°109.4°
C3C2H8108.5°109.5°
C2C1C113.6°109.4°
C1C2H7108.5°109.5°
C1C2H8108.5°109.5°
C2C1H9108.4°109.5°
C2C1H10108.4°109.5°
CC1H9108.4°109.5°
CC1H10108.4°109.5°
C1CH11109.5°109.4°
C1CH12109.4°109.5°
C1CH13109.5°109.4°
OC4H3106.2°109.4°
C4OH4109.5°114.0°
H1NH2120.0°120.0°
H5C3H6109.5°109.4°
H7C2H8109.5°109.5°
H9C1H10109.5°109.5°
H11CH12109.4°109.5°
H11CH13109.5°109.5°
H12CH13109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
NC5O1C4178.9°179.7°
NC5C4C362.6°64.8°
NC5C4O70.7°175.2°
C5NH1H2180.0°180.0°
NC5C4H3173.9°55.3°
O1C5C4C3118.7°115.0°
O1C5C4O108.1°5.0°
O1C5NH10.0°0.0°
O1C5NH2180.0°180.0°
O1C5C4H37.4°125.0°
C5C4C3O128.3°120.0°
C5C4C3H3111.3°120.0°
C5C4C3C2157.9°175.0°
C5C4OH3115.2°120.0°
C4C5NH1178.8°179.8°
C4C5NH21.2°0.3°
C5C4OH4180.0°60.0°
C5C4C3H537.2°55.0°
C5C4C3H681.4°65.0°
C4C3C2H5120.7°120.0°
C4C3C2H6120.7°120.0°
C4C3C2C1166.8°180.0°
C3C4OH3120.1°120.0°
C3C4OH455.3°60.0°
C4C3H5H6117.8°120.0°
C4C3C2H746.3°60.0°
C4C3C2H872.6°60.0°
C3C2C1H7120.6°120.0°
C3C2C1H8120.6°120.0°
C3C2C1C176.9°NaN°
C2C3C4O73.8°65.0°
C2C3C4H346.6°54.9°
C2C3H5H6117.8°120.0°
C3C2H7H8118.3°120.0°
C3C2C1H962.5°60.0°
C3C2C1H1056.3°60.0°
C2C1CH9120.6°120.0°
C2C1CH10120.6°120.0°
C1C2C3H572.5°60.0°
C1C2C3H646.1°60.0°
C1C2H7H8118.2°120.0°
C2C1H9H10118.1°120.0°
C2C1CH11180.0°60.0°
C2C1CH1260.0°60.0°
C2C1CH1360.0°180.0°
CC1C2H756.3°60.0°
CC1C2H862.5°60.0°
CC1H9H10118.2°120.0°
C1CH11H12120.0°120.0°
C1CH11H13120.0°119.9°
C1CH12H13120.0°120.0°
OC4C3H5165.5°175.0°
OC4C3H646.9°55.0°
H3C4OH464.9°180.0°
H3C4C3H574.0°65.1°
H3C4C3H6167.3°175.0°
H5C3C2H7167.0°180.0°
H5C3C2H848.1°60.0°
H6C3C2H774.4°60.0°
H6C3C2H8166.7°180.0°
H7C2C1H9176.9°180.0°
H7C2C1H1064.3°60.0°
H8C2C1H958.1°60.0°
H8C2C1H10176.9°180.0°
H9C1CH1159.4°180.0°
H9C1CH12179.4°60.0°
H9C1CH1360.6°60.1°
H10C1CH1159.4°60.0°
H10C1CH1260.6°180.0°
H10C1CH13179.4°60.0°
H11CH12H13120.0°120.0°

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PDB entries from 2026-03-25

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