English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

HYA

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	C2	sing	1.51Å	1.54Å
C1	N	doub	1.28Å	1.35Å
C1	O1	sing	1.35Å	1.35Å
C2	C3	sing	1.53Å	1.54Å
C2	O2	sing	1.43Å	1.42Å
C2	H2	sing	1.09Å	1.11Å
C3	C4	sing	1.53Å	1.52Å
C3	O3	sing	1.43Å	1.40Å
C3	H3	sing	1.09Å	1.12Å
C4	O4	sing	1.43Å	1.40Å
C4	H41	sing	1.09Å	1.11Å
C4	H42	sing	1.09Å	1.11Å
N	O	sing	1.42Å	1.40Å
O1	HO1	sing	0.97Å	0.95Å
O2	HO2	sing	0.97Å	0.95Å
O3	HO3	sing	0.97Å	0.95Å
O4	HO4	sing	0.97Å	0.95Å
O	HO	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C2	C1	N	123.7°	120.0°
C2	C1	O1	116.4°	120.0°
C1	C2	C3	113.0°	109.5°
C1	C2	O2	111.0°	109.5°
C1	C2	H2	106.6°	109.5°
N	C1	O1	119.8°	120.0°
C1	N	O	119.6°	120.0°
C1	O1	HO1	116.4°	106.8°
C3	C2	O2	111.6°	109.5°
C3	C2	H2	106.0°	109.5°
C2	C3	C4	116.2°	109.5°
C2	C3	O3	111.4°	109.5°
C2	C3	H3	103.1°	109.4°
O2	C2	H2	108.3°	109.5°
C2	O2	HO2	111.0°	106.9°
C4	C3	O3	109.3°	109.5°
C4	C3	H3	105.5°	109.5°
C3	C4	O4	107.4°	109.5°
C3	C4	H41	113.0°	109.5°
C3	C4	H42	113.0°	109.4°
O3	C3	H3	110.9°	109.5°
C3	O3	HO3	111.3°	106.8°
O4	C4	H41	113.0°	109.5°
O4	C4	H42	113.0°	109.5°
C4	O4	HO4	107.4°	106.8°
H41	C4	H42	97.6°	109.5°
N	O	HO	119.6°	106.8°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C2	C1	N	O1	176.1°	180.0°
C1	C2	C3	O2	126.0°	120.0°
C1	C2	C3	H2	116.4°	120.0°
C1	C2	O2	H2	116.6°	120.0°
C1	C2	C3	C4	156.0°	175.0°
C1	C2	C3	O3	77.9°	55.0°
C1	C2	C3	H3	41.1°	65.0°
C2	C1	N	O	170.1°	180.0°
C2	C1	O1	HO1	180.0°	180.0°
C1	C2	O2	HO2	180.0°	60.0°
N	C1	C2	C3	153.5°	125.0°
N	C1	C2	O2	80.2°	115.0°
N	C1	C2	H2	37.5°	5.0°
N	C1	O1	HO1	3.6°	0.0°
C1	N	O	HO	180.0°	179.9°
O1	C1	C2	C3	30.2°	55.0°
O1	C1	C2	O2	96.0°	65.0°
O1	C1	C2	H2	146.3°	175.0°
O1	C1	N	O	13.8°	0.0°
C3	C2	O2	H2	116.3°	120.0°
C2	C3	C4	O3	127.1°	120.0°
C2	C3	C4	H3	113.5°	120.0°
C2	C3	O3	H3	114.3°	120.0°
C2	C3	C4	O4	67.6°	175.0°
C2	C3	C4	H41	57.6°	64.9°
C2	C3	C4	H42	167.2°	55.0°
C3	C2	O2	HO2	52.9°	60.0°
C2	C3	O3	HO3	180.0°	60.0°
O2	C2	C3	C4	78.0°	55.0°
O2	C2	C3	O3	48.1°	65.0°
O2	C2	C3	H3	167.1°	175.0°
H2	C2	C3	C4	39.6°	65.0°
H2	C2	C3	O3	165.7°	175.0°
H2	C2	C3	H3	75.3°	55.0°
H2	C2	O2	HO2	63.3°	180.0°
C4	C3	O3	H3	115.9°	120.0°
C3	C4	O4	H41	125.2°	120.1°
C3	C4	O4	H42	125.2°	119.9°
C3	C4	H41	H42	118.9°	119.9°
C4	C3	O3	HO3	50.2°	60.0°
C3	C4	O4	HO4	180.0°	180.0°
O3	C3	C4	O4	165.3°	65.0°
O3	C3	C4	H41	69.5°	55.0°
O3	C3	C4	H42	40.1°	175.0°
H3	C3	C4	O4	45.9°	55.0°
H3	C3	C4	H41	171.2°	175.1°
H3	C3	C4	H42	79.3°	65.0°
H3	C3	O3	HO3	65.7°	180.0°
O4	C4	H41	H42	118.9°	120.0°
H41	C4	O4	HO4	54.8°	60.0°
H42	C4	O4	HO4	54.8°	60.1°

223790

PDB entries from 2024-08-14

PDB statistics

PDBj update info

Contact PDBj

numon