HY1
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C1' | C2' | doub | 1.38Å | 1.41Å | Aromatic |
| C1' | C6' | sing | 1.38Å | 1.40Å | Aromatic |
| C1' | CA | sing | 1.51Å | 1.54Å | |
| C2' | C3' | sing | 1.38Å | 1.43Å | Aromatic |
| C2' | H2 | sing | 1.08Å | 1.10Å | |
| C3' | C4' | doub | 1.38Å | 1.39Å | Aromatic |
| C3' | H3 | sing | 1.08Å | 1.10Å | |
| C4' | C5' | sing | 1.38Å | 1.40Å | Aromatic |
| C4' | H4 | sing | 1.08Å | 1.10Å | |
| C5' | C6' | doub | 1.38Å | 1.42Å | Aromatic |
| C5' | H5 | sing | 1.08Å | 1.10Å | |
| C6' | H6 | sing | 1.08Å | 1.10Å | |
| CA | C | sing | 1.51Å | 1.53Å | |
| CA | HA1 | sing | 1.09Å | 1.11Å | |
| CA | HA2 | sing | 1.09Å | 1.12Å | |
| C | O | doub | 1.21Å | 1.20Å | |
| C | H | sing | 1.08Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C2' | C1' | C6' | 118.5° | 120.1° |
| C2' | C1' | CA | 120.0° | 119.9° |
| C1' | C2' | C3' | 120.5° | 119.9° |
| C1' | C2' | H2 | 119.2° | 120.1° |
| C6' | C1' | CA | 121.5° | 120.0° |
| C1' | C6' | C5' | 120.5° | 120.0° |
| C1' | C6' | H6 | 119.0° | 120.0° |
| C1' | CA | C | 109.2° | 109.5° |
| C1' | CA | HA1 | 112.3° | 109.5° |
| C1' | CA | HA2 | 112.3° | 109.5° |
| C3' | C2' | H2 | 120.3° | 120.0° |
| C2' | C3' | C4' | 120.7° | 120.0° |
| C2' | C3' | H3 | 120.9° | 120.0° |
| C4' | C3' | H3 | 118.4° | 120.0° |
| C3' | C4' | C5' | 118.7° | 120.0° |
| C3' | C4' | H4 | 120.4° | 120.0° |
| C5' | C4' | H4 | 120.9° | 120.0° |
| C4' | C5' | C6' | 121.2° | 120.0° |
| C4' | C5' | H5 | 118.7° | 120.0° |
| C6' | C5' | H5 | 120.1° | 120.0° |
| C5' | C6' | H6 | 120.5° | 120.0° |
| C | CA | HA1 | 112.3° | 109.5° |
| C | CA | HA2 | 112.3° | 109.4° |
| CA | C | O | 125.7° | 120.0° |
| CA | C | H | 130.5° | 120.0° |
| HA1 | CA | HA2 | 98.1° | 109.5° |
| O | C | H | 103.8° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| C2' | C1' | C6' | CA | 178.1° | 179.7° |
| C1' | C2' | C3' | H2 | 179.9° | 180.0° |
| C1' | C2' | C3' | C4' | 0.3° | 0.0° |
| C1' | C2' | C3' | H3 | 179.7° | 179.9° |
| C2' | C1' | C6' | C5' | 0.3° | 0.4° |
| C2' | C1' | C6' | H6 | 179.7° | 179.9° |
| C2' | C1' | CA | C | 79.0° | 90.0° |
| C2' | C1' | CA | HA1 | 46.2° | 30.0° |
| C2' | C1' | CA | HA2 | 155.7° | 150.0° |
| C6' | C1' | C2' | C3' | 0.5° | 0.3° |
| C6' | C1' | C2' | H2 | 179.6° | 179.8° |
| C1' | C6' | C5' | C4' | 0.0° | 0.3° |
| C1' | C6' | C5' | H6 | 180.0° | 179.6° |
| C1' | C6' | C5' | H5 | 180.0° | 179.7° |
| C6' | C1' | CA | C | 102.9° | 90.3° |
| C6' | C1' | CA | HA1 | 131.8° | 149.7° |
| C6' | C1' | CA | HA2 | 22.4° | 29.7° |
| CA | C1' | C2' | C3' | 177.6° | 180.0° |
| CA | C1' | C2' | H2 | 2.3° | 0.1° |
| CA | C1' | C6' | C5' | 177.7° | 179.9° |
| CA | C1' | C6' | H6 | 2.3° | 0.2° |
| C1' | CA | C | HA1 | 125.3° | 120.0° |
| C1' | CA | C | HA2 | 125.2° | 120.1° |
| C1' | CA | HA1 | HA2 | 118.2° | 120.0° |
| C1' | CA | C | O | 24.9° | 120.0° |
| C1' | CA | C | H | 155.1° | 59.7° |
| C2' | C3' | C4' | H3 | 180.0° | 179.9° |
| C2' | C3' | C4' | C5' | 0.0° | 0.1° |
| C2' | C3' | C4' | H4 | 180.0° | 180.0° |
| H2 | C2' | C3' | C4' | 179.7° | 180.0° |
| H2 | C2' | C3' | H3 | 0.3° | 0.0° |
| C3' | C4' | C5' | H4 | 180.0° | 180.0° |
| C3' | C4' | C5' | C6' | 0.2° | 0.1° |
| C3' | C4' | C5' | H5 | 179.8° | 180.0° |
| H3 | C3' | C4' | C5' | 180.0° | 180.0° |
| H3 | C3' | C4' | H4 | 0.0° | 0.0° |
| C4' | C5' | C6' | H5 | 180.0° | 179.9° |
| C4' | C5' | C6' | H6 | 180.0° | 180.0° |
| H4 | C4' | C5' | C6' | 179.8° | 179.9° |
| H4 | C4' | C5' | H5 | 0.2° | 0.1° |
| H5 | C5' | C6' | H6 | 0.0° | 0.1° |
| C | CA | HA1 | HA2 | 118.2° | 120.0° |
| CA | C | O | H | 180.0° | 179.7° |
| HA1 | CA | C | O | 150.2° | 120.0° |
| HA1 | CA | C | H | 29.8° | 60.3° |
| HA2 | CA | C | O | 100.3° | 0.0° |
| HA2 | CA | C | H | 79.6° | 179.7° |
