HXZ
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C3 | C1 | sing | 1.53Å | 1.50Å | |
| C1 | C4' | sing | 1.53Å | 1.52Å | |
| C1 | H1A | sing | 1.09Å | 1.10Å | |
| C1' | N1 | sing | 1.47Å | 1.47Å | |
| C6 | N1 | sing | 1.37Å | 1.34Å | |
| N1 | C2 | sing | 1.34Å | 1.47Å | |
| P2 | O1 | sing | 1.61Å | 1.58Å | |
| P1 | O1 | sing | 1.61Å | 1.58Å | |
| O10 | P1 | doub | 1.48Å | 1.56Å | |
| P1 | O5' | sing | 1.61Å | 1.59Å | |
| P1 | O11 | sing | 1.61Å | 1.51Å | |
| C2 | O2 | doub | 1.22Å | 1.22Å | |
| C2 | N3 | sing | 1.35Å | 1.40Å | |
| O9 | P2 | doub | 1.48Å | 1.51Å | |
| O3 | P2 | sing | 1.61Å | 1.58Å | |
| P2 | O8 | sing | 1.61Å | 1.56Å | |
| C3 | H3B | sing | 1.09Å | 1.10Å | |
| C3 | H3A | sing | 1.09Å | 1.10Å | |
| C4 | N3 | sing | 1.35Å | 1.38Å | |
| N3 | HN3 | sing | 0.97Å | 1.00Å | |
| P3 | O3 | sing | 1.61Å | 1.57Å | |
| O6 | P3 | doub | 1.48Å | 1.56Å | |
| O7 | P3 | sing | 1.61Å | 1.51Å | |
| P3 | O5 | sing | 1.61Å | 1.56Å | |
| C5 | C4 | sing | 1.42Å | 1.44Å | |
| C4 | O4 | doub | 1.22Å | 1.22Å | |
| C6 | C5 | doub | 1.35Å | 1.45Å | |
| C5M | C5 | sing | 1.51Å | 1.51Å | |
| O5 | HO5 | sing | 0.97Å | 0.95Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| O7 | HO7 | sing | 0.97Å | 0.95Å | |
| O8 | HO8 | sing | 0.97Å | 0.95Å | |
| O4' | C1' | sing | 1.44Å | 1.51Å | |
| C2' | C1' | sing | 1.55Å | 1.51Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| O11 | HO11 | sing | 0.97Å | 0.95Å | |
| C3' | C2' | sing | 1.55Å | 1.47Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C2' | H2'A | sing | 1.09Å | 1.10Å | |
| O3' | C3' | sing | 1.43Å | 1.38Å | |
| C4' | C3' | sing | 1.54Å | 1.52Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C5' | C4' | sing | 1.53Å | 1.52Å | |
| C4' | O4' | sing | 1.44Å | 1.51Å | |
| C5' | O5' | sing | 1.43Å | 1.39Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'A | sing | 1.09Å | 1.10Å | |
| C5M | H5M | sing | 1.09Å | 1.10Å | |
| C5M | H5MA | sing | 1.09Å | 1.10Å | |
| C5M | H5MB | sing | 1.09Å | 1.10Å | |
| C1 | H1B | sing | 1.09Å | 1.10Å | |
| C3 | H3C | sing | 1.09Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C3 | C1 | C4' | 116.2° | 109.5° |
| C3 | C1 | H1A | 107.3° | 109.5° |
| C1 | C3 | H3B | 109.5° | 109.5° |
| C1 | C3 | H3A | 109.5° | 109.4° |
| C3 | C1 | H1B | 107.3° | 109.5° |
| C1 | C3 | H3C | 109.5° | 109.4° |
| C4' | C1 | H1A | 107.3° | 109.5° |
| C1 | C4' | C3' | 112.2° | 109.9° |
| C1 | C4' | C5' | 110.5° | 109.8° |
| C1 | C4' | O4' | 109.0° | 109.7° |
| C4' | C1 | H1B | 107.3° | 109.5° |
| H1A | C1 | H1B | 111.5° | 109.5° |
| C1' | N1 | C6 | 119.1° | 119.6° |
| C1' | N1 | C2 | 120.8° | 119.7° |
| N1 | C1' | O4' | 126.9° | 110.6° |
| N1 | C1' | C2' | 118.3° | 110.6° |
| N1 | C1' | H1' | 82.9° | 110.6° |
| C6 | N1 | C2 | 120.1° | 120.6° |
| N1 | C6 | C5 | 120.1° | 119.7° |
| N1 | C6 | H6 | 119.9° | 120.2° |
| N1 | C2 | O2 | 119.6° | 119.5° |
| N1 | C2 | N3 | 119.8° | 121.0° |
| P2 | O1 | P1 | 125.1° | 134.0° |
| O1 | P2 | O9 | 111.0° | 109.5° |
| O1 | P2 | O3 | 110.5° | 109.5° |
| O1 | P2 | O8 | 107.2° | 109.4° |
| O1 | P1 | O10 | 112.4° | 109.4° |
| O1 | P1 | O5' | 109.5° | 109.4° |
| O1 | P1 | O11 | 108.7° | 109.5° |
| O10 | P1 | O5' | 110.0° | 109.5° |
| O10 | P1 | O11 | 107.5° | 109.5° |
| O5' | P1 | O11 | 108.6° | 109.5° |
| P1 | O5' | C5' | 120.5° | 123.0° |
| P1 | O11 | HO11 | 109.5° | 114.0° |
| O2 | C2 | N3 | 120.6° | 119.5° |
| C2 | N3 | C4 | 120.5° | 120.2° |
| C2 | N3 | HN3 | 119.8° | 119.9° |
| O9 | P2 | O3 | 110.7° | 109.5° |
| O9 | P2 | O8 | 110.0° | 109.5° |
| O3 | P2 | O8 | 107.4° | 109.4° |
| P2 | O3 | P3 | 121.3° | 134.0° |
| P2 | O8 | HO8 | 109.5° | 114.0° |
| H3B | C3 | H3A | 109.5° | 109.5° |
| H3B | C3 | H3C | 109.4° | 109.5° |
| H3A | C3 | H3C | 109.5° | 109.5° |
| C4 | N3 | HN3 | 119.8° | 119.9° |
| N3 | C4 | C5 | 119.8° | 119.4° |
| N3 | C4 | O4 | 119.6° | 120.3° |
| O3 | P3 | O6 | 108.5° | 109.4° |
| O3 | P3 | O7 | 110.0° | 109.5° |
| O3 | P3 | O5 | 109.8° | 109.5° |
| O6 | P3 | O7 | 110.8° | 109.5° |
| O6 | P3 | O5 | 109.2° | 109.5° |
| O7 | P3 | O5 | 108.7° | 109.5° |
| P3 | O7 | HO7 | 109.5° | 114.0° |
| P3 | O5 | HO5 | 109.5° | 114.0° |
| C5 | C4 | O4 | 120.5° | 120.3° |
| C4 | C5 | C6 | 119.6° | 119.1° |
| C4 | C5 | C5M | 121.0° | 120.5° |
| C6 | C5 | C5M | 119.4° | 120.4° |
| C5 | C6 | H6 | 119.9° | 120.2° |
| C5 | C5M | H5M | 109.5° | 109.5° |
| C5 | C5M | H5MA | 109.5° | 109.5° |
| C5 | C5M | H5MB | 109.5° | 109.5° |
| O4' | C1' | C2' | 104.3° | 103.6° |
| O4' | C1' | H1' | 104.8° | 110.6° |
| C1' | O4' | C4' | 106.2° | 106.9° |
| C2' | C1' | H1' | 117.9° | 110.6° |
| C1' | C2' | C3' | 103.4° | 102.1° |
| C1' | C2' | H2' | 111.6° | 110.9° |
| C1' | C2' | H2'A | 111.6° | 110.9° |
| C3' | C2' | H2' | 111.6° | 110.9° |
| C3' | C2' | H2'A | 111.6° | 110.9° |
| C2' | C3' | O3' | 120.2° | 110.5° |
| C2' | C3' | C4' | 103.7° | 104.2° |
| C2' | C3' | H3' | 110.5° | 110.5° |
| H2' | C2' | H2'A | 107.3° | 110.8° |
| O3' | C3' | C4' | 118.9° | 110.6° |
| O3' | C3' | H3' | 91.0° | 110.4° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C4' | C3' | H3' | 112.1° | 110.4° |
| C3' | C4' | C5' | 108.8° | 109.9° |
| C3' | C4' | O4' | 105.5° | 107.4° |
| C5' | C4' | O4' | 110.8° | 110.1° |
| C4' | C5' | O5' | 117.7° | 109.5° |
| C4' | C5' | H5' | 106.8° | 109.5° |
| C4' | C5' | H5'A | 106.8° | 109.5° |
| O5' | C5' | H5' | 106.8° | 109.5° |
| O5' | C5' | H5'A | 106.8° | 109.4° |
| H5' | C5' | H5'A | 112.0° | 109.5° |
| H5M | C5M | H5MA | 109.5° | 109.5° |
| H5M | C5M | H5MB | 109.5° | 109.4° |
| H5MA | C5M | H5MB | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| C3 | C1 | C4' | H1A | 120.0° | 120.0° |
| C3 | C1 | C4' | H1B | 120.0° | 120.0° |
| C3 | C1 | H1A | H1B | 117.3° | 120.0° |
| C1 | C3 | H3B | H3A | 120.0° | 120.0° |
| C1 | C3 | H3B | H3C | 120.0° | 119.9° |
| C1 | C3 | H3A | H3C | 120.0° | 120.0° |
| C3 | C1 | C4' | C3' | 162.3° | 66.4° |
| C3 | C1 | C4' | C5' | 76.1° | 54.7° |
| C3 | C1 | C4' | O4' | 45.9° | 175.8° |
| C4' | C1 | H1A | H1B | 117.2° | 120.0° |
| C4' | C1 | C3 | H3B | 180.0° | 173.2° |
| C4' | C1 | C3 | H3A | 60.0° | 53.2° |
| C1 | C4' | O4' | C1' | 116.2° | 93.1° |
| C1 | C4' | C3' | C2' | 90.4° | 117.4° |
| C1 | C4' | C3' | O3' | 46.1° | 1.4° |
| C1 | C4' | C3' | C5' | 122.5° | 121.0° |
| C1 | C4' | C3' | O4' | 118.6° | 119.3° |
| C1 | C4' | C3' | H3' | 150.4° | 123.9° |
| C1 | C4' | C5' | O4' | 120.9° | 120.9° |
| C1 | C4' | C5' | O5' | 170.1° | 54.9° |
| C1 | C4' | C5' | H5' | 50.1° | 65.1° |
| C1 | C4' | C5' | H5'A | 69.9° | 174.9° |
| C4' | C1 | C3 | H3C | 60.0° | 66.8° |
| H1A | C1 | C3 | H3B | 60.0° | 53.2° |
| H1A | C1 | C3 | H3A | 60.0° | 66.8° |
| H1A | C1 | C4' | C3' | 77.6° | 53.6° |
| H1A | C1 | C4' | C5' | 43.9° | 174.6° |
| H1A | C1 | C4' | O4' | 165.9° | 64.2° |
| H1A | C1 | C3 | H3C | 180.0° | 173.2° |
| C1' | N1 | C6 | C2 | 178.7° | 179.8° |
| C1' | N1 | C2 | O2 | 0.9° | 0.2° |
| C1' | N1 | C2 | N3 | 179.1° | 179.7° |
| C1' | N1 | C6 | C5 | 179.0° | 179.7° |
| C1' | N1 | C6 | H6 | 1.0° | 0.2° |
| N1 | C1' | O4' | C2' | 143.3° | 118.5° |
| N1 | C1' | O4' | H1' | 92.2° | 123.0° |
| N1 | C1' | C2' | H1' | 97.2° | 122.9° |
| N1 | C1' | C2' | C3' | 108.9° | 155.5° |
| N1 | C1' | C2' | H2' | 131.1° | 86.3° |
| N1 | C1' | C2' | H2'A | 11.1° | 37.3° |
| N1 | C1' | O4' | C4' | 123.0° | 158.4° |
| C6 | N1 | C2 | O2 | 179.6° | 180.0° |
| C6 | N1 | C2 | N3 | 0.4° | 0.1° |
| N1 | C6 | C5 | C4 | 0.2° | 0.0° |
| N1 | C6 | C5 | H6 | 180.0° | 179.9° |
| N1 | C6 | C5 | C5M | 179.6° | 180.0° |
| C6 | N1 | C1' | O4' | 39.5° | 128.9° |
| C6 | N1 | C1' | C2' | 99.4° | 117.0° |
| C6 | N1 | C1' | H1' | 142.6° | 5.9° |
| N1 | C2 | O2 | N3 | 180.0° | 179.9° |
| N1 | C2 | N3 | C4 | 0.4° | 0.1° |
| N1 | C2 | N3 | HN3 | 179.6° | 180.0° |
| C2 | N1 | C6 | C5 | 0.3° | 0.1° |
| C2 | N1 | C6 | H6 | 179.7° | 180.0° |
| C2 | N1 | C1' | O4' | 139.2° | 51.3° |
| C2 | N1 | C1' | C2' | 81.9° | 62.9° |
| C2 | N1 | C1' | H1' | 36.0° | 174.3° |
| P2 | O1 | P1 | O10 | 25.1° | 40.1° |
| P2 | O1 | P1 | O5' | 97.5° | 160.0° |
| P2 | O1 | P1 | O11 | 144.0° | 79.9° |
| O1 | P2 | O9 | O3 | 123.0° | 120.0° |
| O1 | P2 | O9 | O8 | 118.5° | 120.0° |
| O1 | P2 | O3 | O8 | 116.6° | 119.9° |
| O1 | P2 | O3 | P3 | 81.0° | 165.0° |
| O1 | P2 | O8 | HO8 | 120.8° | 60.0° |
| O1 | P1 | O10 | O5' | 122.3° | 119.9° |
| O1 | P1 | O10 | O11 | 119.6° | 120.0° |
| O1 | P1 | O5' | O11 | 118.6° | 120.0° |
| P1 | O1 | P2 | O9 | 10.6° | 40.0° |
| P1 | O1 | P2 | O3 | 112.6° | 160.0° |
| P1 | O1 | P2 | O8 | 130.7° | 80.1° |
| O1 | P1 | O11 | HO11 | 122.0° | 60.0° |
| O1 | P1 | O5' | C5' | 79.2° | 175.0° |
| O10 | P1 | O5' | O11 | 117.4° | 120.0° |
| O10 | P1 | O11 | HO11 | 0.0° | 180.0° |
| O10 | P1 | O5' | C5' | 44.8° | 55.0° |
| O5' | P1 | O11 | HO11 | 119.0° | 60.0° |
| P1 | O5' | C5' | C4' | 135.4° | 180.0° |
| P1 | O5' | C5' | H5' | 104.6° | 60.0° |
| P1 | O5' | C5' | H5'A | 15.3° | 60.0° |
| O11 | P1 | O5' | C5' | 162.2° | 65.0° |
| O2 | C2 | N3 | C4 | 179.6° | 180.0° |
| O2 | C2 | N3 | HN3 | 0.4° | 0.1° |
| C2 | N3 | C4 | HN3 | 180.0° | 179.9° |
| C2 | N3 | C4 | C5 | 0.2° | 0.0° |
| C2 | N3 | C4 | O4 | 179.4° | 180.0° |
| O9 | P2 | O3 | O8 | 120.0° | 120.0° |
| O9 | P2 | O3 | P3 | 42.4° | 45.0° |
| O9 | P2 | O8 | HO8 | 0.0° | 180.0° |
| P2 | O3 | P3 | O6 | 133.4° | 40.0° |
| P2 | O3 | P3 | O7 | 12.1° | 80.0° |
| P2 | O3 | P3 | O5 | 107.4° | 160.0° |
| O3 | P2 | O8 | HO8 | 120.5° | 59.9° |
| O8 | P2 | O3 | P3 | 162.4° | 75.0° |
| H3B | C3 | H3A | H3C | 119.9° | 120.0° |
| H3B | C3 | C1 | H1B | 60.0° | 66.7° |
| H3A | C3 | C1 | H1B | 180.0° | 173.3° |
| N3 | C4 | C5 | O4 | 179.7° | 180.0° |
| N3 | C4 | C5 | C6 | 0.1° | 0.0° |
| N3 | C4 | C5 | C5M | 179.7° | 180.0° |
| HN3 | N3 | C4 | C5 | 179.7° | 180.0° |
| HN3 | N3 | C4 | O4 | 0.6° | 0.1° |
| O3 | P3 | O6 | O7 | 120.8° | 120.0° |
| O3 | P3 | O6 | O5 | 119.6° | 120.0° |
| O3 | P3 | O7 | O5 | 120.2° | 120.0° |
| O3 | P3 | O5 | HO5 | 118.8° | 180.0° |
| O3 | P3 | O7 | HO7 | 119.9° | 60.0° |
| O6 | P3 | O7 | O5 | 119.9° | 120.0° |
| O6 | P3 | O5 | HO5 | 0.0° | 60.1° |
| O6 | P3 | O7 | HO7 | 0.0° | 180.0° |
| O7 | P3 | O5 | HO5 | 120.9° | 59.9° |
| O5 | P3 | O7 | HO7 | 119.9° | 60.0° |
| C4 | C5 | C6 | C5M | 179.8° | 180.0° |
| C4 | C5 | C6 | H6 | 179.8° | 180.0° |
| C4 | C5 | C5M | H5M | 180.0° | 0.0° |
| C4 | C5 | C5M | H5MA | 60.0° | 120.0° |
| C4 | C5 | C5M | H5MB | 60.0° | 120.0° |
| O4 | C4 | C5 | C6 | 179.5° | 180.0° |
| O4 | C4 | C5 | C5M | 0.7° | 0.0° |
| C6 | C5 | C5M | H5M | 0.1° | 179.9° |
| C6 | C5 | C5M | H5MA | 119.9° | 60.1° |
| C6 | C5 | C5M | H5MB | 120.2° | 60.0° |
| C5M | C5 | C6 | H6 | 0.4° | 0.1° |
| C5 | C5M | H5M | H5MA | 120.0° | 120.0° |
| C5 | C5M | H5M | H5MB | 120.0° | 120.0° |
| C5 | C5M | H5MA | H5MB | 120.0° | 120.0° |
| O4' | C1' | C2' | H1' | 115.6° | 118.6° |
| O4' | C1' | C2' | C3' | 38.2° | 37.0° |
| O4' | C1' | C2' | H2' | 81.8° | 155.1° |
| O4' | C1' | C2' | H2'A | 158.2° | 81.2° |
| C1' | O4' | C4' | C3' | 4.5° | 26.3° |
| C1' | O4' | C4' | C5' | 122.0° | 145.9° |
| C1' | C2' | C3' | H2' | 120.0° | 118.2° |
| C1' | C2' | C3' | H2'A | 120.0° | 118.2° |
| C1' | C2' | H2' | H2'A | 122.5° | 123.7° |
| C1' | C2' | C3' | O3' | 176.7° | 97.9° |
| C1' | C2' | C3' | C4' | 40.9° | 20.9° |
| C1' | C2' | C3' | H3' | 79.4° | 139.6° |
| C2' | C1' | O4' | C4' | 20.3° | 39.9° |
| H1' | C1' | C2' | C3' | 153.9° | 81.6° |
| H1' | C1' | C2' | H2' | 33.8° | 36.6° |
| H1' | C1' | C2' | H2'A | 86.1° | 160.2° |
| H1' | C1' | O4' | C4' | 144.8° | 78.7° |
| C3' | C2' | H2' | H2'A | 122.5° | 123.7° |
| C2' | C3' | O3' | C4' | 129.3° | 114.9° |
| C2' | C3' | O3' | H3' | 114.6° | 122.6° |
| C2' | C3' | C4' | H3' | 119.2° | 118.7° |
| C2' | C3' | O3' | HO3' | 180.0° | 61.5° |
| C2' | C3' | C4' | C5' | 147.1° | 121.6° |
| C2' | C3' | C4' | O4' | 28.2° | 1.9° |
| H2' | C2' | C3' | O3' | 56.7° | 20.2° |
| H2' | C2' | C3' | C4' | 79.2° | 139.1° |
| H2' | C2' | C3' | H3' | 160.6° | 102.3° |
| H2'A | C2' | C3' | O3' | 63.3° | 143.8° |
| H2'A | C2' | C3' | C4' | 160.9° | 97.3° |
| H2'A | C2' | C3' | H3' | 40.6° | 21.3° |
| O3' | C3' | C4' | H3' | 104.3° | 122.5° |
| O3' | C3' | C4' | C5' | 76.4° | 119.6° |
| O3' | C3' | C4' | O4' | 164.7° | 120.7° |
| C4' | C3' | O3' | HO3' | 50.7° | 176.3° |
| C3' | C4' | C5' | O4' | 115.5° | 118.1° |
| C3' | C4' | C5' | O5' | 66.3° | 175.9° |
| C3' | C4' | C5' | H5' | 173.7° | 55.9° |
| C3' | C4' | C5' | H5'A | 53.7° | 64.1° |
| C3' | C4' | C1 | H1B | 42.3° | 173.6° |
| H3' | C3' | O3' | HO3' | 65.4° | 61.1° |
| H3' | C3' | C4' | C5' | 27.9° | 2.9° |
| H3' | C3' | C4' | O4' | 91.0° | 116.8° |
| C4' | C5' | O5' | H5' | 120.0° | 120.0° |
| C4' | C5' | O5' | H5'A | 120.0° | 120.0° |
| C4' | C5' | H5' | H5'A | 116.6° | 120.0° |
| C5' | C4' | C1 | H1B | 163.9° | 65.4° |
| O4' | C4' | C5' | O5' | 49.2° | 66.0° |
| O4' | C4' | C5' | H5' | 70.8° | 174.0° |
| O4' | C4' | C5' | H5'A | 169.2° | 54.0° |
| O4' | C4' | C1 | H1B | 74.1° | 55.8° |
| O5' | C5' | H5' | H5'A | 116.6° | 120.0° |
| H5M | C5M | H5MA | H5MB | 120.0° | 120.0° |
| H1B | C1 | C3 | H3C | 60.0° | 53.2° |
