HR6
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O2P | P | doub | 1.48Å | 1.60Å | |
| O5' | C5' | sing | 1.45Å | 1.43Å | |
| O5' | P | sing | 1.62Å | 1.62Å | |
| C5' | C4' | sing | 1.51Å | 1.52Å | |
| P | O3' | sing | 1.63Å | 1.61Å | |
| P | S1P | sing | 2.12Å | 1.94Å | |
| C4' | O4' | sing | 1.42Å | 1.43Å | |
| C4' | C3' | sing | 1.55Å | 1.51Å | |
| O3' | C3' | sing | 1.43Å | 1.42Å | |
| O4' | C1' | sing | 1.44Å | 1.44Å | |
| C3' | C2' | sing | 1.54Å | 1.51Å | |
| O2' | C2' | sing | 1.43Å | 1.43Å | |
| C2' | C1' | sing | 1.55Å | 1.52Å | |
| C1' | N9 | sing | 1.46Å | 1.49Å | |
| N3 | C4 | doub | 1.33Å | 1.36Å | Aromatic |
| N3 | C2 | sing | 1.32Å | 1.35Å | Aromatic |
| N9 | C4 | sing | 1.38Å | 1.34Å | Aromatic |
| N9 | C8 | sing | 1.37Å | 1.34Å | Aromatic |
| C4 | C5 | sing | 1.40Å | 1.48Å | Aromatic |
| C2 | N1 | doub | 1.32Å | 1.34Å | Aromatic |
| S2 | C8 | sing | 1.76Å | 1.75Å | |
| S2 | C9 | sing | 1.81Å | 1.77Å | |
| C8 | N7 | doub | 1.31Å | 1.35Å | Aromatic |
| N1 | C6 | sing | 1.33Å | 1.35Å | Aromatic |
| C5 | N7 | sing | 1.36Å | 1.35Å | Aromatic |
| C5 | C6 | doub | 1.40Å | 1.49Å | Aromatic |
| C6 | N6 | sing | 1.39Å | 1.48Å | |
| C15 | C14 | doub | 1.38Å | 1.40Å | Aromatic |
| C15 | C10 | sing | 1.38Å | 1.40Å | Aromatic |
| C14 | C13 | sing | 1.38Å | 1.40Å | Aromatic |
| C9 | C10 | sing | 1.51Å | 1.52Å | |
| C10 | C11 | doub | 1.38Å | 1.40Å | Aromatic |
| C13 | C12 | doub | 1.38Å | 1.40Å | Aromatic |
| C11 | C12 | sing | 1.38Å | 1.40Å | Aromatic |
| S1P | H1 | sing | 1.35Å | 1.30Å | |
| C5' | H2 | sing | 1.09Å | 1.10Å | |
| C5' | H3 | sing | 1.09Å | 1.10Å | |
| C3' | H4 | sing | 1.09Å | 1.10Å | |
| C2' | H5 | sing | 1.09Å | 1.10Å | |
| O2' | H6 | sing | 0.97Å | 0.95Å | |
| C4' | H7 | sing | 1.09Å | 1.10Å | |
| C1' | H8 | sing | 1.09Å | 1.10Å | |
| C2 | H9 | sing | 1.08Å | 1.08Å | |
| N6 | H10 | sing | 0.97Å | 1.00Å | |
| N6 | H11 | sing | 0.97Å | 1.00Å | |
| C9 | H12 | sing | 1.09Å | 1.10Å | |
| C9 | H13 | sing | 1.09Å | 1.10Å | |
| C15 | H14 | sing | 1.08Å | 1.08Å | |
| C14 | H15 | sing | 1.08Å | 1.08Å | |
| C11 | H16 | sing | 1.08Å | 1.08Å | |
| C12 | H17 | sing | 1.08Å | 1.08Å | |
| C13 | H18 | sing | 1.08Å | 1.08Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O2P | P | O5' | 112.1° | 110.0° |
| O2P | P | O3' | 110.6° | 109.9° |
| O2P | P | S1P | 109.8° | 110.0° |
| C5' | O5' | P | 121.5° | 120.2° |
| O5' | C5' | C4' | 106.9° | 106.8° |
| O5' | C5' | H2 | 110.1° | 110.0° |
| O5' | C5' | H3 | 110.1° | 110.0° |
| O5' | P | O3' | 104.7° | 106.9° |
| O5' | P | S1P | 108.6° | 110.0° |
| C5' | C4' | O4' | 115.9° | 117.4° |
| C5' | C4' | C3' | 108.7° | 109.4° |
| C4' | C5' | H2 | 110.1° | 109.9° |
| C4' | C5' | H3 | 110.1° | 110.0° |
| C5' | C4' | H7 | 108.8° | 108.6° |
| O3' | P | S1P | 110.9° | 110.0° |
| P | O3' | C3' | 114.8° | 116.7° |
| P | S1P | H1 | 102.0° | 103.0° |
| O4' | C4' | C3' | 104.2° | 104.8° |
| C4' | O4' | C1' | 109.3° | 108.4° |
| O4' | C4' | H7 | 110.1° | 108.6° |
| C4' | C3' | O3' | 107.9° | 106.1° |
| C4' | C3' | C2' | 102.9° | 99.6° |
| C4' | C3' | H4 | 108.6° | 112.7° |
| C3' | C4' | H7 | 108.9° | 107.7° |
| O3' | C3' | C2' | 118.6° | 113.9° |
| O3' | C3' | H4 | 109.8° | 111.9° |
| O4' | C1' | C2' | 107.2° | 107.4° |
| O4' | C1' | N9 | 108.1° | 109.8° |
| O4' | C1' | H8 | 110.5° | 109.8° |
| C3' | C2' | O2' | 110.8° | 111.0° |
| C3' | C2' | C1' | 101.9° | 101.4° |
| C2' | C3' | H4 | 108.5° | 112.0° |
| C3' | C2' | H5 | 111.0° | 111.0° |
| O2' | C2' | C1' | 109.5° | 111.0° |
| O2' | C2' | H5 | 112.3° | 111.0° |
| C2' | O2' | H6 | 109.5° | 114.0° |
| C2' | C1' | N9 | 112.1° | 109.9° |
| C1' | C2' | H5 | 110.8° | 111.0° |
| C2' | C1' | H8 | 109.3° | 109.9° |
| C1' | N9 | C4 | 127.6° | 126.3° |
| C1' | N9 | C8 | 127.7° | 126.3° |
| N9 | C1' | H8 | 109.7° | 110.0° |
| C4 | N3 | C2 | 121.8° | 120.6° |
| N3 | C4 | N9 | 134.6° | 134.7° |
| N3 | C4 | C5 | 118.2° | 119.1° |
| N3 | C2 | N1 | 123.3° | 122.4° |
| N3 | C2 | H9 | 118.4° | 118.7° |
| C4 | N9 | C8 | 104.7° | 107.3° |
| N9 | C4 | C5 | 107.3° | 106.2° |
| N9 | C8 | S2 | 121.8° | 125.1° |
| N9 | C8 | N7 | 116.5° | 109.8° |
| C4 | C5 | N7 | 107.5° | 107.3° |
| C4 | C5 | C6 | 116.7° | 118.1° |
| C2 | N1 | C6 | 121.7° | 121.2° |
| N1 | C2 | H9 | 118.3° | 118.8° |
| C8 | S2 | C9 | 112.3° | 100.0° |
| S2 | C8 | N7 | 121.7° | 125.1° |
| S2 | C9 | C10 | 113.2° | 109.5° |
| S2 | C9 | H12 | 108.5° | 109.4° |
| S2 | C9 | H13 | 108.5° | 109.5° |
| C8 | N7 | C5 | 103.9° | 109.4° |
| N1 | C6 | C5 | 118.4° | 118.5° |
| N1 | C6 | N6 | 120.4° | 120.8° |
| N7 | C5 | C6 | 135.8° | 134.6° |
| C5 | C6 | N6 | 121.2° | 120.7° |
| C6 | N6 | H10 | 109.5° | 120.0° |
| C6 | N6 | H11 | 109.4° | 120.0° |
| C14 | C15 | C10 | 120.3° | 120.1° |
| C15 | C14 | C13 | 120.3° | 119.9° |
| C14 | C15 | H14 | 119.8° | 119.9° |
| C15 | C14 | H15 | 119.9° | 120.0° |
| C15 | C10 | C9 | 120.3° | 120.0° |
| C15 | C10 | C11 | 119.1° | 119.9° |
| C10 | C15 | H14 | 119.8° | 120.0° |
| C14 | C13 | C12 | 119.8° | 120.0° |
| C13 | C14 | H15 | 119.9° | 120.0° |
| C14 | C13 | H18 | 120.1° | 120.0° |
| C9 | C10 | C11 | 120.6° | 120.0° |
| C10 | C9 | H12 | 108.5° | 109.5° |
| C10 | C9 | H13 | 108.6° | 109.5° |
| C10 | C11 | C12 | 120.5° | 120.0° |
| C10 | C11 | H16 | 119.8° | 120.0° |
| C13 | C12 | C11 | 120.0° | 120.0° |
| C13 | C12 | H17 | 120.0° | 120.0° |
| C12 | C13 | H18 | 120.1° | 120.0° |
| C12 | C11 | H16 | 119.8° | 120.0° |
| C11 | C12 | H17 | 120.0° | 120.0° |
| H2 | C5' | H3 | 109.5° | 110.1° |
| H10 | N6 | H11 | 109.5° | 120.0° |
| H12 | C9 | H13 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O2P | P | O5' | C5' | 157.9° | 153.6° |
| O2P | P | O5' | O3' | 119.9° | 119.3° |
| O2P | P | O5' | S1P | 121.5° | 121.3° |
| O2P | P | O3' | S1P | 122.1° | 121.3° |
| O2P | P | O3' | C3' | 163.7° | 157.7° |
| O2P | P | S1P | H1 | 0.0° | 58.8° |
| O5' | C5' | C4' | H2 | 119.6° | 119.3° |
| O5' | C5' | C4' | H3 | 119.6° | 119.4° |
| C5' | O5' | P | O3' | 38.0° | 34.3° |
| C5' | O5' | P | S1P | 80.6° | 85.1° |
| O5' | C5' | C4' | O4' | 179.9° | 173.9° |
| O5' | C5' | C4' | C3' | 63.0° | 66.9° |
| O5' | C5' | H2 | H3 | 121.2° | 121.4° |
| O5' | C5' | C4' | H7 | 55.4° | 50.4° |
| P | O5' | C5' | C4' | 49.5° | 49.6° |
| O5' | P | O3' | S1P | 117.0° | 119.4° |
| O5' | P | O3' | C3' | 42.8° | 38.4° |
| O5' | P | S1P | H1 | 122.9° | 62.6° |
| P | O5' | C5' | H2 | 169.1° | 168.9° |
| P | O5' | C5' | H3 | 70.1° | 69.7° |
| C5' | C4' | O4' | C3' | 119.3° | 121.5° |
| C5' | C4' | O4' | H7 | 124.0° | 123.5° |
| C5' | C4' | C3' | H7 | 118.4° | 117.8° |
| C5' | C4' | C3' | O3' | 72.2° | 72.4° |
| C5' | C4' | O4' | C1' | 144.6° | 151.8° |
| C5' | C4' | C3' | C2' | 161.6° | 169.2° |
| C4' | C5' | H2 | H3 | 121.2° | 121.3° |
| C5' | C4' | C3' | H4 | 46.7° | 50.4° |
| P | O3' | C3' | C4' | 62.4° | 57.4° |
| P | O3' | C3' | C2' | 178.8° | 165.9° |
| O3' | P | S1P | H1 | 122.5° | 180.0° |
| P | O3' | C3' | H4 | 55.7° | 65.9° |
| S1P | P | O3' | C3' | 74.2° | 81.0° |
| O4' | C4' | C3' | H7 | 117.4° | 115.5° |
| O4' | C4' | C3' | O3' | 163.6° | 161.0° |
| O4' | C4' | C3' | C2' | 37.5° | 42.5° |
| C4' | O4' | C1' | C2' | 3.0° | 5.3° |
| C4' | O4' | C1' | N9 | 124.0° | 124.8° |
| O4' | C4' | C5' | H2 | 60.5° | 54.6° |
| O4' | C4' | C5' | H3 | 60.3° | 66.7° |
| O4' | C4' | C3' | H4 | 77.4° | 76.3° |
| C4' | O4' | C1' | H8 | 116.0° | 114.2° |
| C4' | C3' | O3' | C2' | 116.3° | 108.5° |
| C4' | C3' | O3' | H4 | 118.2° | 123.3° |
| C3' | C4' | O4' | C1' | 25.2° | 30.2° |
| C4' | C3' | C2' | H4 | 114.9° | 119.4° |
| C4' | C3' | C2' | O2' | 81.9° | 80.8° |
| C4' | C3' | C2' | C1' | 34.6° | 37.2° |
| C3' | C4' | C5' | H2 | 177.4° | 173.8° |
| C3' | C4' | C5' | H3 | 56.6° | 52.4° |
| C4' | C3' | C2' | H5 | 152.7° | 155.2° |
| O3' | C3' | C2' | H4 | 126.1° | 128.2° |
| O3' | C3' | C2' | O2' | 37.1° | 31.6° |
| O3' | C3' | C2' | C1' | 153.6° | 149.7° |
| O3' | C3' | C2' | H5 | 88.4° | 92.3° |
| O3' | C3' | C4' | H7 | 46.2° | 45.5° |
| O4' | C1' | C2' | C3' | 20.3° | 21.5° |
| O4' | C1' | C2' | O2' | 97.1° | 96.5° |
| O4' | C1' | C2' | N9 | 118.5° | 119.4° |
| O4' | C1' | C2' | H8 | 119.7° | 119.4° |
| O4' | C1' | N9 | H8 | 120.5° | 121.0° |
| O4' | C1' | N9 | C4 | 42.5° | 137.1° |
| O4' | C1' | N9 | C8 | 136.5° | 42.6° |
| O4' | C1' | C2' | H5 | 138.5° | 139.6° |
| C1' | O4' | C4' | H7 | 91.4° | 84.7° |
| C3' | C2' | O2' | C1' | 111.7° | 112.0° |
| C3' | C2' | O2' | H5 | 124.7° | 124.0° |
| C3' | C2' | C1' | H5 | 118.1° | 118.0° |
| C3' | C2' | C1' | N9 | 98.2° | 97.9° |
| C3' | C2' | O2' | H6 | 180.0° | 180.0° |
| C2' | C3' | C4' | H7 | 80.0° | 73.0° |
| C3' | C2' | C1' | H8 | 140.1° | 141.0° |
| O2' | C2' | C1' | H5 | 124.5° | 124.0° |
| O2' | C2' | C1' | N9 | 144.4° | 144.1° |
| O2' | C2' | C3' | H4 | 163.2° | 159.8° |
| O2' | C2' | C1' | H8 | 22.7° | 22.9° |
| C2' | C1' | N9 | H8 | 121.6° | 121.1° |
| C2' | C1' | N9 | C4 | 75.4° | 105.0° |
| C2' | C1' | N9 | C8 | 105.6° | 75.3° |
| C1' | C2' | C3' | H4 | 80.3° | 82.2° |
| C1' | C2' | O2' | H6 | 68.3° | 68.0° |
| C1' | N9 | C4 | N3 | 0.9° | 0.0° |
| C1' | N9 | C4 | C8 | 179.2° | 179.8° |
| C1' | N9 | C4 | C5 | 179.3° | 180.0° |
| C1' | N9 | C8 | S2 | 0.6° | 0.0° |
| C1' | N9 | C8 | N7 | 179.3° | 179.9° |
| N9 | C1' | C2' | H5 | 20.0° | 20.1° |
| N3 | C4 | N9 | C5 | 179.7° | 180.0° |
| N3 | C4 | N9 | C8 | 179.9° | 179.8° |
| C4 | N3 | C2 | N1 | 0.2° | 0.1° |
| N3 | C4 | C5 | N7 | 179.9° | 180.0° |
| N3 | C4 | C5 | C6 | 0.2° | 0.0° |
| C4 | N3 | C2 | H9 | 179.8° | 180.0° |
| C2 | N3 | C4 | N9 | 179.7° | 180.0° |
| C2 | N3 | C4 | C5 | 0.0° | 0.0° |
| N3 | C2 | N1 | H9 | 180.0° | 179.9° |
| N3 | C2 | N1 | C6 | 0.1° | 0.1° |
| C4 | N9 | C8 | S2 | 179.8° | 179.8° |
| C4 | N9 | C8 | N7 | 0.1° | 0.4° |
| N9 | C4 | C5 | N7 | 0.2° | 0.0° |
| N9 | C4 | C5 | C6 | 180.0° | 180.0° |
| C4 | N9 | C1' | H8 | 163.0° | 16.1° |
| C8 | N9 | C4 | C5 | 0.2° | 0.2° |
| N9 | C8 | S2 | N7 | 179.9° | 179.8° |
| N9 | C8 | S2 | C9 | 139.7° | 180.0° |
| N9 | C8 | N7 | C5 | 0.0° | 0.4° |
| C8 | N9 | C1' | H8 | 16.0° | 163.6° |
| C4 | C5 | N7 | C8 | 0.1° | 0.3° |
| C4 | C5 | C6 | N1 | 0.2° | 0.0° |
| C4 | C5 | N7 | C6 | 179.8° | 180.0° |
| C4 | C5 | C6 | N6 | 179.8° | 180.0° |
| C2 | N1 | C6 | C5 | 0.1° | 0.0° |
| C2 | N1 | C6 | N6 | 179.9° | 179.9° |
| S2 | C8 | N7 | C5 | 179.9° | 179.7° |
| C8 | S2 | C9 | C10 | 172.2° | 180.0° |
| C8 | S2 | C9 | H12 | 51.7° | 60.0° |
| C8 | S2 | C9 | H13 | 67.2° | 60.0° |
| C9 | S2 | C8 | N7 | 40.3° | 0.2° |
| S2 | C9 | C10 | C15 | 103.3° | 89.8° |
| S2 | C9 | C10 | H12 | 120.5° | 119.9° |
| S2 | C9 | C10 | H13 | 120.6° | 120.0° |
| S2 | C9 | C10 | C11 | 77.5° | 90.0° |
| S2 | C9 | H12 | H13 | 118.3° | 120.0° |
| C8 | N7 | C5 | C6 | 179.9° | 179.8° |
| N1 | C6 | C5 | N7 | 180.0° | 180.0° |
| N1 | C6 | C5 | N6 | 180.0° | 180.0° |
| C6 | N1 | C2 | H9 | 179.9° | 180.0° |
| N1 | C6 | N6 | H10 | 0.0° | 0.1° |
| N1 | C6 | N6 | H11 | 120.0° | 180.0° |
| N7 | C5 | C6 | N6 | 0.0° | 0.1° |
| C5 | C6 | N6 | H10 | 180.0° | 180.0° |
| C5 | C6 | N6 | H11 | 60.0° | 0.1° |
| C6 | N6 | H10 | H11 | 120.0° | 179.9° |
| C14 | C15 | C10 | H14 | 180.0° | 180.0° |
| C15 | C14 | C13 | H15 | 180.0° | 180.0° |
| C14 | C15 | C10 | C9 | 179.8° | 180.0° |
| C14 | C15 | C10 | C11 | 0.5° | 0.2° |
| C15 | C14 | C13 | C12 | 0.0° | 0.2° |
| C15 | C14 | C13 | H18 | 179.9° | 180.0° |
| C10 | C15 | C14 | C13 | 0.2° | 0.0° |
| C15 | C10 | C9 | C11 | 179.2° | 179.8° |
| C15 | C10 | C11 | C12 | 0.6° | 0.3° |
| C15 | C10 | C9 | H12 | 136.2° | 150.3° |
| C15 | C10 | C9 | H13 | 17.3° | 30.3° |
| C10 | C15 | C14 | H15 | 179.8° | 180.0° |
| C15 | C10 | C11 | H16 | 179.4° | 179.7° |
| C14 | C13 | C12 | H18 | 180.0° | 179.8° |
| C14 | C13 | C12 | C11 | 0.0° | 0.2° |
| C13 | C14 | C15 | H14 | 179.7° | 180.0° |
| C14 | C13 | C12 | H17 | 180.0° | 179.7° |
| C9 | C10 | C11 | C12 | 179.8° | 180.0° |
| C10 | C9 | H12 | H13 | 118.3° | 120.0° |
| C9 | C10 | C15 | H14 | 0.2° | 0.0° |
| C9 | C10 | C11 | H16 | 0.2° | 0.0° |
| C10 | C11 | C12 | C13 | 0.3° | 0.0° |
| C10 | C11 | C12 | H16 | 180.0° | 180.0° |
| C11 | C10 | C9 | H12 | 43.1° | 29.9° |
| C11 | C10 | C9 | H13 | 162.0° | 150.0° |
| C11 | C10 | C15 | H14 | 179.4° | 179.7° |
| C10 | C11 | C12 | H17 | 179.7° | 180.0° |
| C13 | C12 | C11 | H17 | 180.0° | 179.9° |
| C12 | C13 | C14 | H15 | 180.0° | 179.8° |
| C13 | C12 | C11 | H16 | 179.7° | 180.0° |
| C11 | C12 | C13 | H18 | 180.0° | 180.0° |
| H2 | C5' | C4' | H7 | 64.2° | 68.9° |
| H3 | C5' | C4' | H7 | 175.0° | 169.7° |
| H4 | C3' | C2' | H5 | 37.7° | 35.8° |
| H4 | C3' | C4' | H7 | 165.1° | 168.2° |
| H5 | C2' | O2' | H6 | 55.3° | 56.0° |
| H5 | C2' | C1' | H8 | 101.8° | 101.0° |
| H14 | C15 | C14 | H15 | 0.3° | 0.0° |
| H15 | C14 | C13 | H18 | 0.1° | 0.0° |
| H16 | C11 | C12 | H17 | 0.3° | 0.0° |
| H17 | C12 | C13 | H18 | 0.0° | 0.0° |
