HPV
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C2 | C3 | sing | 1.51Å | 1.51Å | |
| C2 | O3 | doub | 1.21Å | 1.22Å | |
| C2 | C1 | sing | 1.49Å | 1.45Å | |
| O4P | P | sing | 1.61Å | 1.54Å | |
| P | O2P | sing | 1.61Å | 1.54Å | |
| P | O3P | doub | 1.48Å | 1.53Å | |
| P | O1P | sing | 1.61Å | 1.62Å | |
| O1P | C3 | sing | 1.43Å | 1.42Å | |
| C1 | O1 | doub | 1.21Å | 1.25Å | |
| C1 | O2 | sing | 1.35Å | 1.27Å | |
| O4P | HO4P | sing | 0.97Å | 0.95Å | |
| O2P | HO2P | sing | 0.97Å | 0.95Å | |
| C3 | H3 | sing | 1.09Å | 1.10Å | |
| C3 | H3A | sing | 1.09Å | 1.10Å | |
| O2 | HO2 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C3 | C2 | O3 | 121.0° | 120.0° |
| C3 | C2 | C1 | 118.5° | 120.0° |
| C2 | C3 | O1P | 112.6° | 109.4° |
| C2 | C3 | H3 | 108.4° | 109.4° |
| C2 | C3 | H3A | 107.8° | 109.5° |
| O3 | C2 | C1 | 120.5° | 120.0° |
| C2 | C1 | O1 | 113.8° | 120.0° |
| C2 | C1 | O2 | 121.7° | 120.0° |
| O4P | P | O2P | 113.8° | 109.4° |
| O4P | P | O3P | 114.3° | 109.5° |
| O4P | P | O1P | 105.8° | 109.5° |
| P | O4P | HO4P | 109.5° | 114.0° |
| O2P | P | O3P | 115.3° | 109.5° |
| O2P | P | O1P | 103.9° | 109.5° |
| P | O2P | HO2P | 109.5° | 114.1° |
| O3P | P | O1P | 101.8° | 109.5° |
| P | O1P | C3 | 117.5° | 122.9° |
| O1P | C3 | H3 | 108.5° | 109.5° |
| O1P | C3 | H3A | 107.7° | 109.5° |
| O1 | C1 | O2 | 124.5° | 120.0° |
| C1 | O2 | HO2 | 109.5° | 117.0° |
| H3 | C3 | H3A | 111.9° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| C3 | C2 | O3 | C1 | 177.3° | 179.7° |
| C2 | C3 | O1P | P | 166.8° | 180.0° |
| C2 | C3 | O1P | H3 | 120.0° | 119.9° |
| C2 | C3 | O1P | H3A | 118.7° | 120.0° |
| C3 | C2 | C1 | O1 | 53.5° | 0.0° |
| C3 | C2 | C1 | O2 | 126.6° | 180.0° |
| C2 | C3 | H3 | H3A | 118.7° | 120.0° |
| O3 | C2 | C3 | O1P | 90.8° | 0.0° |
| O3 | C2 | C1 | O1 | 123.9° | 179.7° |
| O3 | C2 | C1 | O2 | 56.0° | 0.3° |
| O3 | C2 | C3 | H3 | 149.2° | 120.0° |
| O3 | C2 | C3 | H3A | 27.9° | 120.0° |
| C1 | C2 | C3 | O1P | 91.9° | 179.7° |
| C2 | C1 | O1 | O2 | 179.9° | 180.0° |
| C1 | C2 | C3 | H3 | 28.1° | 60.3° |
| C1 | C2 | C3 | H3A | 149.4° | 59.7° |
| C2 | C1 | O2 | HO2 | 179.9° | 180.0° |
| O4P | P | O2P | O3P | 135.0° | 120.0° |
| O4P | P | O2P | O1P | 114.5° | 120.0° |
| O4P | P | O3P | O1P | 113.5° | 120.0° |
| O4P | P | O1P | C3 | 134.4° | 65.0° |
| O4P | P | O2P | HO2P | 53.8° | 60.0° |
| O2P | P | O3P | O1P | 111.7° | 120.0° |
| O2P | P | O1P | C3 | 105.5° | 175.0° |
| O2P | P | O4P | HO4P | 39.4° | 60.0° |
| O3P | P | O1P | C3 | 14.6° | 55.0° |
| O3P | P | O4P | HO4P | 174.9° | 180.0° |
| O3P | P | O2P | HO2P | 81.1° | 60.0° |
| O1P | P | O4P | HO4P | 74.0° | 59.9° |
| O1P | P | O2P | HO2P | 168.4° | 180.0° |
| P | O1P | C3 | H3 | 46.8° | 60.0° |
| P | O1P | C3 | H3A | 74.5° | 60.0° |
| O1P | C3 | H3 | H3A | 118.7° | 120.1° |
| O1 | C1 | O2 | HO2 | 0.0° | 0.1° |
