Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

HPM

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2sing1.53Å1.56Å
C1N6sing1.47Å1.51Å
C1H1C1sing1.09Å1.11Å
C1H1C2sing1.09Å1.11Å
C2C3sing1.53Å1.56Å
C2H2C1sing1.09Å1.12Å
C2H2C2sing1.09Å1.12Å
C3C4sing1.53Å1.57Å
C3H3C1sing1.09Å1.12Å
C3H3C2sing1.09Å1.12Å
C4C5sing1.53Å1.56Å
C4H4C1sing1.09Å1.12Å
C4H4C2sing1.09Å1.12Å
C5N6sing1.47Å1.52Å
C5H5C1sing1.09Å1.12Å
C5H5C2sing1.09Å1.12Å
N6C7sing1.47Å1.52Å
C7C8sing1.53Å1.55Å
C7H7C1sing1.09Å1.11Å
C7H7C2sing1.09Å1.12Å
C8C9sing1.53Å1.53Å
C8O39sing1.43Å1.42Å
C8H8sing1.09Å1.12Å
C9O10sing1.43Å1.46Å
C9H9C1sing1.09Å1.12Å
C9H9C2sing1.09Å1.11Å
O10C11sing1.36Å1.40Å
C11C12doub1.40Å1.43ÅAromatic
C11C16sing1.38Å1.42ÅAromatic
C12C13sing1.37Å1.42ÅAromatic
C12O37sing1.36Å1.39Å
C13C14doub1.40Å1.41ÅAromatic
C13H13sing1.08Å1.10Å
C14C15sing1.42Å1.48ÅAromatic
C14C20sing1.42Å1.44ÅAromatic
C15C16doub1.40Å1.42ÅAromatic
C15N17sing1.34Å1.36ÅAromatic
C16H16sing1.08Å1.10Å
N17C18doub1.31Å1.32ÅAromatic
C18N19sing1.32Å1.33ÅAromatic
C18H18sing1.08Å1.10Å
N19C20doub1.33Å1.36ÅAromatic
C20N21sing1.38Å1.47Å
N21C22sing1.40Å1.43Å
N21H21sing0.97Å1.02Å
C22C23doub1.39Å1.42ÅAromatic
C22C27sing1.39Å1.44ÅAromatic
C23N24sing1.32Å1.34ÅAromatic
C23H23sing1.08Å1.10Å
N24C25doub1.32Å1.35ÅAromatic
C25N26sing1.32Å1.32ÅAromatic
C25N28sing1.39Å1.43Å
N26C27doub1.32Å1.32ÅAromatic
C27H27sing1.08Å1.10Å
N28C29sing1.35Å1.34Å
N28H28sing0.97Å1.02Å
C29C30sing1.48Å1.52Å
C29O36doub1.22Å1.25Å
C30C31doub1.40Å1.44ÅAromatic
C30C35sing1.40Å1.43ÅAromatic
C31C32sing1.38Å1.41ÅAromatic
C31H31sing1.08Å1.10Å
C32C33doub1.38Å1.41ÅAromatic
C32H32sing1.08Å1.10Å
C33C34sing1.38Å1.41ÅAromatic
C33H33sing1.08Å1.10Å
C34C35doub1.38Å1.41ÅAromatic
C34H34sing1.08Å1.10Å
C35H35sing1.08Å1.10Å
O37C38sing1.43Å1.45Å
C38H381sing1.09Å1.11Å
C38H382sing1.09Å1.11Å
C38H383sing1.09Å1.11Å
O39H39sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1N6112.3°109.8°
C2C1H1C1111.2°109.5°
C2C1H1C2111.2°109.4°
C1C2C3112.2°109.2°
C1C2H2C1111.2°109.5°
C1C2H2C2111.2°109.5°
N6C1H1C1111.2°109.4°
N6C1H1C2111.2°109.4°
C1N6C5111.4°107.3°
C1N6C7111.4°106.7°
H1C1C1H1C299.2°109.3°
C3C2H2C1111.2°109.6°
C3C2H2C2111.2°109.6°
C2C3C4113.2°108.9°
C2C3H3C1110.8°109.6°
C2C3H3C2110.8°109.6°
H2C1C2H2C299.2°109.5°
C4C3H3C1110.9°109.6°
C4C3H3C2110.8°109.5°
C3C4C5112.7°109.2°
C3C4H4C1111.0°109.5°
C3C4H4C2111.0°109.6°
H3C1C3H3C299.5°109.6°
C5C4H4C1111.0°109.5°
C5C4H4C2111.0°109.6°
C4C5N6112.5°109.8°
C4C5H5C1111.1°109.5°
C4C5H5C2111.1°109.4°
H4C1C4H4C299.3°109.6°
N6C5H5C1111.1°109.4°
N6C5H5C2111.1°109.4°
C5N6C7112.8°106.7°
H5C1C5H5C299.3°109.4°
N6C7C8115.8°109.5°
N6C7H7C1109.9°109.5°
N6C7H7C2109.9°109.5°
C8C7H7C1109.9°109.4°
C8C7H7C2109.9°109.5°
C7C8C9114.7°109.5°
C7C8O39109.2°109.5°
C7C8H8108.1°109.4°
H7C1C7H7C2100.3°109.5°
C9C8O39108.5°109.4°
C9C8H8108.1°109.5°
C8C9O10109.4°109.5°
C8C9H9C1112.2°109.5°
C8C9H9C2112.2°109.5°
O39C8H8108.1°109.5°
C8O39H39109.3°106.8°
O10C9H9C1112.2°109.5°
O10C9H9C2112.2°109.4°
C9O10C11123.8°106.8°
H9C1C9H9C298.2°109.4°
O10C11C12121.1°119.6°
O10C11C16119.0°119.6°
C12C11C16119.8°120.7°
C11C12C13120.3°120.7°
C11C12O37121.2°119.6°
C11C16C15120.7°119.5°
C11C16H16119.6°120.3°
C13C12O37118.5°119.7°
C12C13C14121.0°119.7°
C12C13H13119.5°120.1°
C12O37C38119.7°106.8°
C14C13H13119.5°120.2°
C13C14C15119.1°119.9°
C13C14C20126.1°122.0°
C15C14C20114.8°118.1°
C14C15C16119.1°119.4°
C14C15N17121.0°118.8°
C14C20N19120.3°118.3°
C14C20N21121.9°120.9°
C16C15N17119.8°121.8°
C15C16H16119.7°120.2°
C15N17C18118.2°120.4°
N17C18N19125.9°123.0°
N17C18H18117.1°118.5°
N19C18H18117.1°118.6°
C18N19C20119.8°121.5°
N19C20N21117.8°120.8°
C20N21C22129.9°120.0°
C20N21H21115.0°120.0°
C22N21H21115.1°119.9°
N21C22C23121.2°120.9°
N21C22C27123.1°120.8°
C23C22C27115.8°118.4°
C22C23N24120.6°119.2°
C22C23H23119.7°120.4°
C22C27N26121.8°119.1°
C22C27H27119.1°120.5°
N24C23H23119.7°120.4°
C23N24C25118.2°120.8°
N24C25N26125.8°121.8°
N24C25N28116.0°119.1°
N26C25N28118.1°119.1°
C25N26C27117.8°120.8°
C25N28C29138.6°120.0°
C25N28H28110.7°120.0°
N26C27H27119.1°120.4°
C29N28H28110.7°120.0°
N28C29C30115.2°120.0°
N28C29O36121.4°120.0°
C30C29O36123.4°120.0°
C29C30C31122.9°120.1°
C29C30C35119.3°120.1°
C31C30C35117.8°119.7°
C30C31C32121.0°119.8°
C30C31H31119.5°120.0°
C30C35C34120.9°119.8°
C30C35H35119.5°120.1°
C32C31H31119.5°120.1°
C31C32C33119.7°120.2°
C31C32H32120.2°119.9°
C33C32H32120.2°119.9°
C32C33C34120.4°120.3°
C32C33H33119.8°119.8°
C34C33H33119.8°119.9°
C33C34C35120.1°120.2°
C33C34H34119.9°119.9°
C35C34H34120.0°119.9°
C34C35H35119.5°120.1°
O37C38H381119.7°109.5°
O37C38H382108.5°109.5°
O37C38H383108.6°109.4°
H381C38H382108.6°109.5°
H381C38H383108.5°109.5°
H382C38H383101.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1N6H1C1125.3°120.1°
C2C1N6H1C2125.3°120.1°
C2C1H1C1H1C2117.1°119.8°
C1C2C3H2C1125.3°119.9°
C1C2C3H2C2125.2°119.9°
C1C2H2C1H2C2117.1°120.0°
C1C2C3C446.2°55.6°
C1C2C3H3C179.1°64.3°
C1C2C3H3C2171.4°175.4°
C2C1N6C558.4°65.6°
C2C1N6C7174.7°179.6°
N6C1H1C1H1C2117.1°119.8°
N6C1C2C352.9°61.4°
N6C1C2H2C1178.1°178.6°
N6C1C2H2C272.4°58.6°
C1N6C5C457.1°65.7°
C1N6C5C7126.1°114.1°
C1N6C5H5C1177.6°54.5°
C1N6C5H5C268.1°174.3°
C1N6C7C8178.9°179.9°
C1N6C7H7C153.6°60.1°
C1N6C7H7C255.8°59.9°
H1C1C1C2C3178.2°178.5°
H1C1C1C2H2C156.6°58.5°
H1C1C1C2H2C252.9°61.6°
H1C1C1N6C5176.3°174.2°
H1C1C1N6C749.4°60.2°
H1C2C1C2C372.4°58.7°
H1C2C1C2H2C152.9°61.3°
H1C2C1C2H2C2162.4°178.7°
H1C2C1N6C566.9°54.5°
H1C2C1N6C760.0°59.6°
C3C2H2C1H2C2117.1°120.2°
C2C3C4H3C1125.3°119.9°
C2C3C4H3C2125.3°119.8°
C2C3H3C1H3C2116.7°120.3°
C2C3C4C545.1°55.7°
C2C3C4H4C1170.4°175.5°
C2C3C4H4C280.1°64.3°
H2C1C2C3C4171.4°175.5°
H2C1C2C3H3C146.1°55.6°
H2C1C2C3H3C263.3°64.7°
H2C2C2C3C479.1°64.3°
H2C2C2C3H3C1155.6°175.8°
H2C2C2C3H3C246.2°55.5°
C4C3H3C1H3C2116.7°120.2°
C3C4C5H4C1125.3°119.8°
C3C4C5H4C2125.2°120.0°
C3C4H4C1H4C2116.9°120.2°
C3C4C5N650.4°61.4°
C3C4C5H5C1175.7°58.7°
C3C4C5H5C274.8°178.5°
H3C1C3C4C580.1°64.2°
H3C1C3C4H4C145.2°55.6°
H3C1C3C4H4C2154.6°175.8°
H3C2C3C4C5170.4°175.5°
H3C2C3C4H4C164.3°64.7°
H3C2C3C4H4C245.1°55.5°
C5C4H4C1H4C2116.9°120.2°
C4C5N6H5C1125.3°120.1°
C4C5N6H5C2125.2°120.0°
C4C5H5C1H5C2117.0°119.9°
C4C5N6C7176.7°179.7°
H4C1C4C5N6175.7°178.7°
H4C1C4C5H5C159.0°61.2°
H4C1C4C5H5C250.5°58.7°
H4C2C4C5N674.8°58.5°
H4C2C4C5H5C150.5°178.6°
H4C2C4C5H5C2159.9°61.5°
N6C5H5C1H5C2117.0°119.8°
C5N6C7C854.9°65.5°
C5N6C7H7C1179.8°174.6°
C5N6C7H7C270.3°54.5°
H5C1C5N6C751.5°59.6°
H5C2C5N6C758.0°60.2°
N6C7C8H7C1125.3°120.0°
N6C7C8H7C2125.3°120.0°
N6C7H7C1H7C2115.7°120.0°
N6C7C8C9151.6°179.2°
N6C7C8O3986.4°59.3°
N6C7C8H831.0°60.8°
C8C7H7C1H7C2115.7°120.0°
C7C8C9O39122.4°120.0°
C7C8C9H8120.6°120.0°
C7C8O39H8117.4°120.0°
C7C8C9O10170.4°175.0°
C7C8C9H9C145.2°65.0°
C7C8C9H9C264.3°55.0°
C7C8O39H39180.0°60.0°
H7C1C7C8C983.1°59.3°
H7C1C7C8O3938.9°60.7°
H7C1C7C8H8156.3°179.2°
H7C2C7C8C926.3°60.7°
H7C2C7C8O39148.3°179.3°
H7C2C7C8H894.3°59.3°
C9C8O39H8117.0°120.0°
C8C9O10H9C1125.3°120.1°
C8C9O10H9C2125.3°120.0°
C8C9H9C1H9C2118.1°120.0°
C8C9O10C11163.8°180.0°
C9C8O39H3954.3°60.0°
O39C8C9O1048.0°65.0°
O39C8C9H9C177.3°55.0°
O39C8C9H9C2173.3°175.0°
H8C8C9O1068.9°55.0°
H8C8C9H9C1165.8°175.1°
H8C8C9H9C256.3°65.0°
H8C8O39H3962.6°180.0°
O10C9H9C1H9C2118.2°119.9°
C9O10C11C12179.8°179.5°
C9O10C11C160.1°0.0°
H9C1C9O10C1138.5°59.9°
H9C2C9O10C1171.0°60.0°
O10C11C12C16180.0°179.4°
O10C11C12C13179.9°180.0°
O10C11C12O370.3°0.3°
O10C11C16C15180.0°180.0°
O10C11C16H160.0°0.3°
C11C12C13O37179.8°179.7°
C11C12C13C140.0°0.3°
C11C12C13H13180.0°179.7°
C12C11C16C150.1°0.6°
C12C11C16H16180.0°179.7°
C11C12O37C38131.4°179.7°
C16C11C12C130.1°0.6°
C16C11C12O37179.7°179.7°
C11C16C15C140.1°0.3°
C11C16C15H16180.0°179.7°
C11C16C15N17180.0°179.7°
C12C13C14H13180.0°180.0°
C12C13C14C150.1°0.0°
C12C13C14C20179.9°180.0°
C13C12O37C3848.8°0.0°
O37C12C13C14179.8°180.0°
O37C12C13H130.2°0.0°
C12O37C38H381180.0°60.0°
C12O37C38H38254.7°180.0°
C12O37C38H38354.8°60.0°
C13C14C15C20179.9°180.0°
C13C14C15C160.2°0.0°
C13C14C15N17179.9°180.0°
C13C14C20N19179.9°180.0°
C13C14C20N210.4°0.0°
H13C13C14C15179.9°180.0°
H13C13C14C200.1°0.0°
C14C15C16N17179.9°180.0°
C14C15C16H16179.9°180.0°
C14C15N17C180.0°0.0°
C15C14C20N190.1°0.0°
C15C14C20N21179.7°180.0°
C20C14C15C16179.9°180.0°
C20C14C15N170.0°0.0°
C14C20N19C180.1°0.0°
C14C20N19N21179.8°180.0°
C14C20N21C22171.7°174.9°
C14C20N21H218.3°5.2°
C16C15N17C18179.9°180.0°
N17C15C16H160.0°0.0°
C15N17C18N190.0°0.0°
C15N17C18H18180.0°180.0°
N17C18N19H18180.0°180.0°
N17C18N19C200.0°0.0°
C18N19C20N21179.7°180.0°
H18C18N19C20179.9°179.9°
N19C20N21C228.1°5.1°
N19C20N21H21171.9°174.9°
C20N21C22H21180.0°180.0°
C20N21C22C23143.5°149.9°
C20N21C22C2735.3°30.4°
N21C22C23C27178.9°179.7°
N21C22C23N24178.3°180.0°
N21C22C23H231.7°0.0°
N21C22C27N26178.3°179.7°
N21C22C27H271.8°0.3°
H21N21C22C2336.5°30.1°
H21N21C22C27144.7°149.6°
C22C23N24H23180.0°179.9°
C22C23N24C250.0°0.0°
C23C22C27N260.6°0.6°
C23C22C27H27179.4°180.0°
C27C22C23N240.5°0.3°
C27C22C23H23179.5°179.8°
C22C27N26C250.1°0.6°
C22C27N26H27180.0°179.4°
C23N24C25N260.5°0.0°
C23N24C25N28177.7°180.0°
H23C23N24C25180.0°180.0°
N24C25N26N28178.3°180.0°
N24C25N26C270.5°0.3°
N24C25N28C2917.8°180.0°
N24C25N28H28162.1°0.0°
C25N26C27H27179.9°180.0°
N26C25N28C29163.7°0.0°
N26C25N28H2816.3°180.0°
N28C25N26C27177.7°179.7°
C25N28C29H28180.0°180.0°
C25N28C29C30178.4°180.0°
C25N28C29O360.9°0.0°
N28C29C30O36179.4°180.0°
N28C29C30C310.5°180.0°
N28C29C30C35179.9°0.3°
H28N28C29C301.5°0.0°
H28N28C29O36179.1°180.0°
C29C30C31C35179.5°179.7°
C29C30C31C32179.5°179.9°
C29C30C31H310.4°0.1°
C29C30C35C34179.7°179.8°
C29C30C35H350.3°0.3°
O36C29C30C31178.8°0.0°
O36C29C30C350.7°179.8°
C30C31C32H31180.0°180.0°
C30C31C32C330.1°0.1°
C30C31C32H32179.9°180.0°
C31C30C35C340.2°0.5°
C31C30C35H35179.8°180.0°
C35C30C31C320.0°0.2°
C35C30C31H31180.0°179.8°
C30C35C34C330.2°0.5°
C30C35C34H35180.0°179.5°
C30C35C34H34179.8°179.8°
C31C32C33H32180.0°179.9°
C31C32C33C340.1°0.1°
C31C32C33H33179.9°179.9°
H31C31C32C33179.9°179.9°
H31C31C32H320.1°0.1°
C32C33C34H33180.0°179.9°
C32C33C34C350.1°0.3°
C32C33C34H34180.0°179.9°
H32C32C33C34179.9°179.9°
H32C32C33H330.1°0.0°
C33C34C35H34180.0°179.7°
C33C34C35H35179.8°180.0°
H33C33C34C35179.9°179.8°
H33C33C34H340.0°0.1°
H34C34C35H350.2°0.3°
O37C38H381H382125.3°120.0°
O37C38H381H383125.2°119.9°
O37C38H382H383114.2°120.0°
H381C38H382H383114.2°120.0°

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon