HP9
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O | C | doub | 1.21Å | 1.21Å | |
| C | CA | sing | 1.51Å | 1.51Å | |
| N | CA | sing | 1.47Å | 1.48Å | |
| CA | CB | sing | 1.53Å | 1.52Å | |
| CB | CG | sing | 1.51Å | 1.51Å | |
| CD1 | CG | doub | 1.39Å | 1.39Å | Aromatic |
| CD1 | CE1 | sing | 1.38Å | 1.39Å | Aromatic |
| CG | CD2 | sing | 1.38Å | 1.39Å | Aromatic |
| CE1 | CZ | doub | 1.39Å | 1.38Å | Aromatic |
| CD2 | CE2 | doub | 1.39Å | 1.38Å | Aromatic |
| CZ | CE2 | sing | 1.40Å | 1.39Å | Aromatic |
| CZ | O12 | sing | 1.35Å | 1.37Å | |
| CE2 | C3 | sing | 1.48Å | 1.48Å | |
| O12 | C7 | sing | 1.35Å | 1.36Å | |
| C3 | O13 | doub | 1.22Å | 1.25Å | |
| C3 | C6 | sing | 1.48Å | 1.47Å | |
| C7 | C6 | doub | 1.40Å | 1.38Å | Aromatic |
| C7 | C8 | sing | 1.39Å | 1.39Å | Aromatic |
| C6 | C11 | sing | 1.39Å | 1.38Å | Aromatic |
| C8 | C9 | doub | 1.38Å | 1.38Å | Aromatic |
| C11 | C10 | doub | 1.38Å | 1.38Å | Aromatic |
| C9 | C10 | sing | 1.39Å | 1.39Å | Aromatic |
| C10 | F14 | sing | 1.35Å | 1.34Å | |
| CA | HA | sing | 1.09Å | 1.10Å | |
| CE1 | HE1 | sing | 1.08Å | 1.08Å | |
| C | OXT | sing | 1.34Å | 1.03Å | |
| CB | HB2 | sing | 1.09Å | 1.10Å | |
| CB | HB3 | sing | 1.09Å | 1.10Å | |
| CD1 | HD1 | sing | 1.08Å | 1.08Å | |
| CD2 | HD2 | sing | 1.08Å | 1.08Å | |
| C11 | H8 | sing | 1.08Å | 1.08Å | |
| C8 | H9 | sing | 1.08Å | 1.08Å | |
| C9 | H10 | sing | 1.08Å | 1.08Å | |
| N | H | sing | 1.01Å | 1.00Å | |
| N | H2 | sing | 1.01Å | 1.00Å | |
| OXT | HXT | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O | C | CA | 122.2° | 120.0° |
| O | C | OXT | 118.9° | 120.0° |
| C | CA | N | 109.3° | 109.5° |
| C | CA | CB | 111.0° | 109.5° |
| C | CA | HA | 108.4° | 109.5° |
| CA | C | OXT | 118.9° | 120.0° |
| N | CA | CB | 110.8° | 109.5° |
| N | CA | HA | 108.9° | 109.4° |
| CA | N | H | 109.5° | 111.0° |
| CA | N | H2 | 109.5° | 111.0° |
| CA | CB | CG | 116.1° | 109.5° |
| CB | CA | HA | 108.3° | 109.5° |
| CA | CB | HB2 | 107.8° | 109.5° |
| CA | CB | HB3 | 107.8° | 109.5° |
| CB | CG | CD1 | 119.2° | 119.9° |
| CB | CG | CD2 | 119.7° | 119.9° |
| CG | CB | HB2 | 107.8° | 109.4° |
| CG | CB | HB3 | 107.8° | 109.5° |
| CG | CD1 | CE1 | 120.2° | 120.8° |
| CD1 | CG | CD2 | 120.3° | 120.1° |
| CG | CD1 | HD1 | 119.9° | 119.6° |
| CD1 | CE1 | CZ | 119.2° | 120.1° |
| CD1 | CE1 | HE1 | 120.4° | 119.9° |
| CE1 | CD1 | HD1 | 119.9° | 119.6° |
| CG | CD2 | CE2 | 118.9° | 119.5° |
| CG | CD2 | HD2 | 120.5° | 120.3° |
| CE1 | CZ | CE2 | 120.2° | 118.9° |
| CE1 | CZ | O12 | 118.2° | 120.0° |
| CZ | CE1 | HE1 | 120.4° | 119.9° |
| CD2 | CE2 | CZ | 120.8° | 120.5° |
| CD2 | CE2 | C3 | 120.5° | 121.1° |
| CE2 | CD2 | HD2 | 120.5° | 120.2° |
| CE2 | CZ | O12 | 121.5° | 121.1° |
| CZ | CE2 | C3 | 118.5° | 118.4° |
| CZ | O12 | C7 | 122.2° | 122.0° |
| CE2 | C3 | O13 | 122.0° | 122.1° |
| CE2 | C3 | C6 | 116.8° | 115.8° |
| O12 | C7 | C6 | 121.2° | 121.1° |
| O12 | C7 | C8 | 117.7° | 119.9° |
| O13 | C3 | C6 | 120.4° | 122.1° |
| C3 | C6 | C7 | 119.4° | 118.4° |
| C3 | C6 | C11 | 120.5° | 121.0° |
| C6 | C7 | C8 | 121.0° | 118.9° |
| C7 | C6 | C11 | 119.8° | 120.6° |
| C7 | C8 | C9 | 119.6° | 120.1° |
| C7 | C8 | H9 | 120.2° | 119.9° |
| C6 | C11 | C10 | 119.0° | 119.5° |
| C6 | C11 | H8 | 120.5° | 120.3° |
| C8 | C9 | C10 | 118.9° | 120.8° |
| C9 | C8 | H9 | 120.2° | 120.0° |
| C8 | C9 | H10 | 120.5° | 119.6° |
| C11 | C10 | C9 | 121.6° | 120.1° |
| C11 | C10 | F14 | 118.5° | 120.0° |
| C10 | C11 | H8 | 120.5° | 120.2° |
| C9 | C10 | F14 | 119.7° | 119.9° |
| C10 | C9 | H10 | 120.6° | 119.6° |
| C | OXT | HXT | 109.5° | 117.0° |
| HB2 | CB | HB3 | 109.5° | 109.5° |
| H | N | H2 | 109.4° | 111.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O | C | CA | OXT | 180.0° | 179.9° |
| O | C | CA | N | 21.7° | 20.0° |
| O | C | CA | CB | 100.8° | 100.0° |
| O | C | CA | HA | 140.3° | 140.0° |
| O | C | OXT | HXT | 0.0° | 0.0° |
| C | CA | N | CB | 122.6° | 120.0° |
| C | CA | N | HA | 118.3° | 120.0° |
| C | CA | CB | HA | 118.9° | 120.0° |
| C | CA | CB | CG | 69.0° | 175.0° |
| C | CA | CB | HB2 | 52.0° | 65.0° |
| C | CA | CB | HB3 | 170.0° | 55.0° |
| C | CA | N | H | 180.0° | 60.0° |
| C | CA | N | H2 | 60.0° | 176.0° |
| CA | C | OXT | HXT | 180.0° | 180.0° |
| N | CA | CB | HA | 119.4° | 120.0° |
| N | CA | CB | CG | 52.6° | 65.0° |
| N | CA | C | OXT | 158.3° | 160.0° |
| N | CA | CB | HB2 | 173.6° | 55.0° |
| N | CA | CB | HB3 | 68.3° | 175.0° |
| CA | N | H | H2 | 120.0° | 124.0° |
| CA | CB | CG | HB2 | 121.0° | 120.0° |
| CA | CB | CG | HB3 | 121.0° | 120.0° |
| CA | CB | CG | CD1 | 84.5° | 89.8° |
| CA | CB | CG | CD2 | 105.7° | 90.0° |
| CB | CA | C | OXT | 79.2° | 80.0° |
| CA | CB | HB2 | HB3 | 117.0° | 120.0° |
| CB | CA | N | H | 57.4° | 60.0° |
| CB | CA | N | H2 | 177.3° | 64.0° |
| CB | CG | CD1 | CD2 | 169.7° | 179.7° |
| CB | CG | CD1 | CE1 | 173.8° | 179.6° |
| CB | CG | CD2 | CE2 | 171.0° | 180.0° |
| CG | CB | CA | HA | 172.1° | 55.0° |
| CG | CB | HB2 | HB3 | 117.0° | 120.0° |
| CB | CG | CD1 | HD1 | 6.2° | 0.4° |
| CB | CG | CD2 | HD2 | 9.0° | 0.0° |
| CG | CD1 | CE1 | HD1 | 180.0° | 179.9° |
| CG | CD1 | CE1 | CZ | 7.0° | 0.1° |
| CD1 | CG | CD2 | CE2 | 1.3° | 0.3° |
| CG | CD1 | CE1 | HE1 | 173.0° | 179.8° |
| CD1 | CG | CB | HB2 | 36.4° | 150.3° |
| CD1 | CG | CB | HB3 | 154.5° | 30.2° |
| CD1 | CG | CD2 | HD2 | 178.7° | 179.8° |
| CE1 | CD1 | CG | CD2 | 4.0° | 0.2° |
| CD1 | CE1 | CZ | HE1 | 180.0° | 179.8° |
| CD1 | CE1 | CZ | CE2 | 7.4° | 0.5° |
| CD1 | CE1 | CZ | O12 | 176.4° | 179.1° |
| CG | CD2 | CE2 | HD2 | 180.0° | 180.0° |
| CG | CD2 | CE2 | CZ | 1.7° | 0.8° |
| CG | CD2 | CE2 | C3 | 176.0° | 179.8° |
| CD2 | CG | CB | HB2 | 133.4° | 30.0° |
| CD2 | CG | CB | HB3 | 15.3° | 150.0° |
| CD2 | CG | CD1 | HD1 | 176.0° | 179.9° |
| CE1 | CZ | CE2 | CD2 | 4.8° | 0.9° |
| CE1 | CZ | CE2 | O12 | 176.0° | 179.6° |
| CE1 | CZ | CE2 | C3 | 179.2° | 179.6° |
| CE1 | CZ | O12 | C7 | 178.9° | 164.7° |
| CZ | CE1 | CD1 | HD1 | 173.0° | 180.0° |
| CD2 | CE2 | CZ | C3 | 174.4° | 179.4° |
| CD2 | CE2 | CZ | O12 | 179.2° | 178.7° |
| CD2 | CE2 | C3 | O13 | 10.9° | 12.2° |
| CD2 | CE2 | C3 | C6 | 179.6° | 167.7° |
| CE2 | CZ | O12 | C7 | 4.9° | 15.7° |
| CZ | CE2 | C3 | O13 | 174.8° | 167.2° |
| CZ | CE2 | C3 | C6 | 5.2° | 12.8° |
| CE2 | CZ | CE1 | HE1 | 172.6° | 179.7° |
| CZ | CE2 | CD2 | HD2 | 178.3° | 179.2° |
| O12 | CZ | CE2 | C3 | 4.8° | 0.8° |
| CZ | O12 | C7 | C6 | 5.6° | 15.7° |
| CZ | O12 | C7 | C8 | 171.9° | 164.7° |
| O12 | CZ | CE1 | HE1 | 3.6° | 0.7° |
| CE2 | C3 | O13 | C6 | 169.1° | 180.0° |
| CE2 | C3 | C6 | C7 | 5.9° | 12.8° |
| CE2 | C3 | C6 | C11 | 179.4° | 167.1° |
| C3 | CE2 | CD2 | HD2 | 4.0° | 0.2° |
| O12 | C7 | C6 | C3 | 6.2° | 0.8° |
| O12 | C7 | C6 | C8 | 177.5° | 179.6° |
| O12 | C7 | C6 | C11 | 179.7° | 179.2° |
| O12 | C7 | C8 | C9 | 177.4° | 179.4° |
| O12 | C7 | C8 | H9 | 2.6° | 0.7° |
| O13 | C3 | C6 | C7 | 175.6° | 167.2° |
| O13 | C3 | C6 | C11 | 10.9° | 12.8° |
| C3 | C6 | C7 | C11 | 173.5° | 179.9° |
| C3 | C6 | C7 | C8 | 171.3° | 179.6° |
| C3 | C6 | C11 | C10 | 176.1° | 179.7° |
| C3 | C6 | C11 | H8 | 3.9° | 0.3° |
| C6 | C7 | C8 | C9 | 5.0° | 0.2° |
| C7 | C6 | C11 | C10 | 2.6° | 0.2° |
| C7 | C6 | C11 | H8 | 177.4° | 179.8° |
| C6 | C7 | C8 | H9 | 175.0° | 179.7° |
| C8 | C7 | C6 | C11 | 2.2° | 0.3° |
| C7 | C8 | C9 | H9 | 180.0° | 179.9° |
| C7 | C8 | C9 | C10 | 3.0° | 0.0° |
| C7 | C8 | C9 | H10 | 177.0° | 179.9° |
| C6 | C11 | C10 | H8 | 180.0° | 180.0° |
| C6 | C11 | C10 | C9 | 4.7° | 0.0° |
| C6 | C11 | C10 | F14 | 179.1° | 180.0° |
| C8 | C9 | C10 | C11 | 1.9° | 0.1° |
| C8 | C9 | C10 | H10 | 180.0° | 180.0° |
| C8 | C9 | C10 | F14 | 176.2° | 179.8° |
| C11 | C10 | C9 | F14 | 174.3° | 179.9° |
| C11 | C10 | C9 | H10 | 178.1° | 179.8° |
| C9 | C10 | C11 | H8 | 175.3° | 180.0° |
| C10 | C9 | C8 | H9 | 177.1° | 179.9° |
| F14 | C10 | C11 | H8 | 0.9° | 0.1° |
| F14 | C10 | C9 | H10 | 3.8° | 0.2° |
| HA | CA | C | OXT | 39.7° | 40.1° |
| HA | CA | CB | HB2 | 67.0° | 175.0° |
| HA | CA | CB | HB3 | 51.1° | 65.0° |
| HA | CA | N | H | 61.7° | 180.0° |
| HA | CA | N | H2 | 58.3° | 56.1° |
| HE1 | CE1 | CD1 | HD1 | 7.0° | 0.2° |
| H9 | C8 | C9 | H10 | 2.9° | 0.0° |
