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Summary Geometry Related PDB entries

Obsolete: HP3

HP3 was replaced with PGR on

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	C2	sing	1.53Å	1.54Å
C1	H11	sing	1.09Å	1.11Å
C1	H12	sing	1.09Å	1.12Å
C1	H13	sing	1.09Å	1.12Å
C2	O2	sing	1.43Å	1.42Å
C2	C3	sing	1.53Å	1.52Å
C2	H2	sing	1.09Å	1.11Å
O2	HO2	sing	0.97Å	0.95Å
C3	O3	sing	1.43Å	1.43Å
C3	H31	sing	1.09Å	1.11Å
C3	H32	sing	1.09Å	1.12Å
O3	HO3	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C2	C1	H11	110.2°	109.4°
C2	C1	H12	111.9°	109.5°
C2	C1	H13	112.0°	109.5°
C1	C2	O2	110.2°	109.6°
C1	C2	C3	110.6°	109.5°
C1	C2	H2	108.2°	109.4°
H11	C1	H12	111.9°	109.4°
H11	C1	H13	112.0°	109.4°
H12	C1	H13	98.4°	109.5°
O2	C2	C3	109.4°	109.5°
O2	C2	H2	109.4°	109.4°
C2	O2	HO2	110.2°	106.7°
C3	C2	H2	109.0°	109.4°
C2	C3	O3	108.4°	109.5°
C2	C3	H31	112.6°	109.4°
C2	C3	H32	112.6°	109.5°
O3	C3	H31	112.6°	109.4°
O3	C3	H32	112.6°	109.5°
C3	O3	HO3	108.4°	106.9°
H31	C3	H32	97.9°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C2	C1	H11	H12	125.2°	120.0°
C2	C1	H11	H13	125.4°	120.0°
C2	C1	H12	H13	117.9°	120.1°
C1	C2	O2	C3	121.9°	120.1°
C1	C2	O2	H2	118.8°	119.9°
C1	C2	C3	H2	118.8°	119.9°
C1	C2	O2	HO2	179.9°	60.0°
C1	C2	C3	O3	50.6°	180.0°
C1	C2	C3	H31	175.9°	60.1°
C1	C2	C3	H32	74.6°	59.9°
H11	C1	H12	H13	117.8°	119.9°
H11	C1	C2	O2	179.9°	60.0°
H11	C1	C2	C3	58.8°	60.1°
H11	C1	C2	H2	60.5°	180.0°
H12	C1	C2	O2	54.7°	59.9°
H12	C1	C2	C3	66.4°	180.0°
H12	C1	C2	H2	174.3°	60.1°
H13	C1	C2	O2	54.7°	180.0°
H13	C1	C2	C3	175.8°	59.9°
H13	C1	C2	H2	64.8°	60.1°
O2	C2	C3	H2	119.6°	119.9°
O2	C2	C3	O3	172.2°	59.9°
O2	C2	C3	H31	62.5°	60.1°
O2	C2	C3	H32	47.0°	180.0°
C3	C2	O2	HO2	58.1°	60.1°
C2	C3	O3	H31	125.3°	120.0°
C2	C3	O3	H32	125.2°	120.1°
C2	C3	H31	H32	118.5°	120.0°
C2	C3	O3	HO3	179.9°	180.0°
H2	C2	O2	HO2	61.2°	180.0°
H2	C2	C3	O3	68.2°	60.0°
H2	C2	C3	H31	57.1°	180.0°
H2	C2	C3	H32	166.5°	60.0°
O3	C3	H31	H32	118.5°	120.0°
H31	C3	O3	HO3	54.8°	60.1°
H32	C3	O3	HO3	54.7°	59.9°

249697

PDB entries from 2026-02-25

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