English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

HOW

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O5	N6	sing	1.21Å	1.42Å	Aromatic
O5	C4	sing	1.34Å	1.34Å	Aromatic
N6	C2	doub	1.31Å	1.35Å	Aromatic
C4	C3	doub	1.35Å	1.33Å	Aromatic
C2	C3	sing	1.42Å	1.39Å	Aromatic
C2	N1	sing	1.39Å	1.38Å
C3	H9	sing	1.08Å	1.08Å
N1	H8	sing	0.97Å	1.00Å
N1	H7	sing	0.97Å	1.00Å
C4	H10	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
N6	O5	C4	107.8°	111.8°
O5	N6	C2	105.0°	111.4°
O5	C4	C3	110.4°	106.6°
O5	C4	H10	124.8°	126.7°
N6	C2	C3	109.8°	106.2°
N6	C2	N1	121.9°	126.9°
C4	C3	C2	107.0°	103.9°
C4	C3	H9	126.5°	128.0°
C3	C4	H10	124.8°	126.7°
C3	C2	N1	128.2°	126.8°
C2	C3	H9	126.5°	128.1°
C2	N1	H8	109.5°	120.0°
C2	N1	H7	109.5°	120.0°
H8	N1	H7	109.5°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N6	O5	C4	C3	0.0°	0.3°
O5	N6	C2	C3	0.0°	0.5°
O5	N6	C2	N1	180.0°	179.8°
N6	O5	C4	H10	180.0°	179.7°
C4	O5	N6	C2	0.0°	0.5°
O5	C4	C3	H10	180.0°	180.0°
O5	C4	C3	C2	0.0°	0.0°
O5	C4	C3	H9	180.0°	180.0°
N6	C2	C3	C4	0.0°	0.3°
N6	C2	C3	N1	180.0°	179.7°
N6	C2	C3	H9	180.0°	179.7°
N6	C2	N1	H8	0.0°	179.6°
N6	C2	N1	H7	120.0°	0.3°
C4	C3	C2	H9	180.0°	180.0°
C4	C3	C2	N1	180.0°	180.0°
C3	C2	N1	H8	179.9°	0.0°
C3	C2	N1	H7	60.0°	180.0°
C2	C3	C4	H10	180.0°	180.0°
N1	C2	C3	H9	0.0°	0.0°
C2	N1	H8	H7	120.0°	179.9°
H9	C3	C4	H10	0.0°	0.0°

222415

PDB entries from 2024-07-10

PDB statistics

PDBj update info

Contact PDBj

numon