HOO
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OAM | CD2 | doub | 1.21Å | 1.36Å | |
| N | CA | sing | 1.47Å | 1.48Å | |
| CB | CG | sing | 1.51Å | 1.54Å | |
| CB | CA | sing | 1.53Å | 1.54Å | |
| CD2 | CG | sing | 1.49Å | 1.33Å | |
| CD2 | NE2 | sing | 1.35Å | 1.33Å | |
| CG | ND1 | doub | 1.30Å | 1.33Å | |
| NE2 | CE1 | sing | 1.34Å | 1.33Å | |
| CA | C | sing | 1.51Å | 1.54Å | |
| O | C | doub | 1.21Å | 1.25Å | |
| ND1 | CE1 | sing | 1.34Å | 1.35Å | |
| CE1 | OAG | doub | 1.21Å | 1.23Å | |
| N | H | sing | 1.01Å | 1.00Å | |
| N | H2 | sing | 1.01Å | 1.00Å | |
| CA | HA | sing | 1.09Å | 1.10Å | |
| CB | H8 | sing | 1.09Å | 1.10Å | |
| CB | H9 | sing | 1.09Å | 1.10Å | |
| NE2 | H10 | sing | 0.97Å | 1.00Å | |
| C | OXT | sing | 1.34Å | 1.35Å | |
| OXT | HXT | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OAM | CD2 | CG | 127.9° | 127.4° |
| OAM | CD2 | NE2 | 123.1° | 127.4° |
| N | CA | CB | 109.0° | 109.5° |
| N | CA | C | 107.3° | 109.5° |
| CA | N | H | 109.5° | 111.0° |
| CA | N | H2 | 109.5° | 111.0° |
| N | CA | HA | 111.4° | 109.5° |
| CG | CB | CA | 118.1° | 109.4° |
| CB | CG | CD2 | 119.7° | 126.8° |
| CB | CG | ND1 | 131.2° | 126.9° |
| CG | CB | H8 | 107.3° | 109.4° |
| CG | CB | H9 | 107.3° | 109.5° |
| CB | CA | C | 108.2° | 109.5° |
| CB | CA | HA | 110.5° | 109.5° |
| CA | CB | H8 | 107.3° | 109.5° |
| CA | CB | H9 | 107.3° | 109.5° |
| CG | CD2 | NE2 | 109.0° | 105.3° |
| CD2 | CG | ND1 | 109.0° | 106.3° |
| CD2 | NE2 | CE1 | 106.2° | 107.8° |
| CD2 | NE2 | H10 | 126.9° | 126.1° |
| CG | ND1 | CE1 | 105.4° | 109.8° |
| NE2 | CE1 | ND1 | 110.3° | 110.8° |
| NE2 | CE1 | OAG | 122.9° | 124.6° |
| CE1 | NE2 | H10 | 126.9° | 126.1° |
| CA | C | O | 112.2° | 120.0° |
| C | CA | HA | 110.4° | 109.5° |
| CA | C | OXT | 130.1° | 120.0° |
| O | C | OXT | 117.7° | 120.0° |
| ND1 | CE1 | OAG | 126.8° | 124.6° |
| H | N | H2 | 109.5° | 111.0° |
| H8 | CB | H9 | 109.5° | 109.5° |
| C | OXT | HXT | 109.5° | 117.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OAM | CD2 | CG | CB | 2.7° | 0.0° |
| OAM | CD2 | CG | NE2 | 179.0° | 179.9° |
| OAM | CD2 | CG | ND1 | 179.7° | 179.8° |
| OAM | CD2 | NE2 | CE1 | 180.0° | 179.8° |
| OAM | CD2 | NE2 | H10 | 0.0° | 0.0° |
| N | CA | CB | CG | 133.9° | 65.0° |
| N | CA | CB | C | 116.4° | 120.0° |
| N | CA | CB | HA | 122.6° | 120.0° |
| N | CA | C | HA | 121.6° | 120.0° |
| N | CA | C | O | 75.0° | 20.2° |
| CA | N | H | H2 | 120.0° | 123.9° |
| N | CA | CB | H8 | 104.9° | 54.9° |
| N | CA | CB | H9 | 12.7° | 175.0° |
| N | CA | C | OXT | 104.8° | 160.0° |
| CG | CB | CA | H8 | 121.2° | 119.9° |
| CG | CB | CA | H9 | 121.2° | 120.0° |
| CB | CG | CD2 | ND1 | 177.0° | 179.8° |
| CB | CG | CD2 | NE2 | 178.3° | 179.9° |
| CG | CB | CA | C | 109.7° | 175.0° |
| CB | CG | ND1 | CE1 | 177.6° | 180.0° |
| CG | CB | CA | HA | 11.3° | 55.0° |
| CG | CB | H8 | H9 | 116.1° | 120.0° |
| CA | CB | CG | CD2 | 163.8° | 179.7° |
| CA | CB | CG | ND1 | 20.0° | 0.0° |
| CB | CA | C | HA | 121.0° | 120.0° |
| CB | CA | C | O | 42.5° | 99.7° |
| CB | CA | N | H | 180.0° | 176.1° |
| CB | CA | N | H2 | 60.0° | 60.0° |
| CA | CB | H8 | H9 | 116.1° | 120.1° |
| CB | CA | C | OXT | 137.8° | 80.0° |
| CG | CD2 | NE2 | CE1 | 1.0° | 0.3° |
| CD2 | CG | ND1 | CE1 | 1.1° | 0.2° |
| CD2 | CG | CB | H8 | 42.6° | 59.8° |
| CD2 | CG | CB | H9 | 75.0° | 60.3° |
| CG | CD2 | NE2 | H10 | 179.0° | 179.9° |
| NE2 | CD2 | CG | ND1 | 1.3° | 0.3° |
| CD2 | NE2 | CE1 | H10 | 180.0° | 179.8° |
| CD2 | NE2 | CE1 | ND1 | 0.3° | 0.2° |
| CD2 | NE2 | CE1 | OAG | 179.3° | 179.7° |
| CG | ND1 | CE1 | NE2 | 0.5° | 0.0° |
| CG | ND1 | CE1 | OAG | 179.9° | 179.9° |
| ND1 | CG | CB | H8 | 141.2° | 120.0° |
| ND1 | CG | CB | H9 | 101.2° | 120.0° |
| NE2 | CE1 | ND1 | OAG | 179.6° | 179.9° |
| CA | C | O | OXT | 179.8° | 179.7° |
| C | CA | N | H | 63.1° | 64.0° |
| C | CA | N | H2 | 57.0° | 60.0° |
| C | CA | CB | H8 | 11.5° | 65.0° |
| C | CA | CB | H9 | 129.1° | 55.0° |
| CA | C | OXT | HXT | 179.8° | 179.7° |
| O | C | CA | HA | 163.5° | 140.3° |
| O | C | OXT | HXT | 0.0° | 0.0° |
| ND1 | CE1 | NE2 | H10 | 179.7° | 180.0° |
| OAG | CE1 | NE2 | H10 | 0.7° | 0.1° |
| H | N | CA | HA | 57.9° | 56.1° |
| H2 | N | CA | HA | 178.0° | 180.0° |
| HA | CA | CB | H8 | 132.5° | 175.0° |
| HA | CA | CB | H9 | 109.9° | 64.9° |
| HA | CA | C | OXT | 16.8° | 40.0° |
