HO4
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C11 | C10 | trip | 1.17Å | 1.11Å | |
| O2' | C2' | sing | 1.43Å | 1.43Å | |
| C10 | C7 | sing | 1.43Å | 1.27Å | |
| C2' | C3' | sing | 1.55Å | 1.52Å | |
| C2' | C1' | sing | 1.54Å | 1.51Å | |
| C7 | C8 | doub | 1.36Å | 1.34Å | Aromatic |
| C7 | C5 | sing | 1.47Å | 1.35Å | Aromatic |
| C8 | N9 | sing | 1.37Å | 1.32Å | Aromatic |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | C4' | sing | 1.54Å | 1.51Å | |
| N6 | C6 | sing | 1.38Å | 1.34Å | |
| C5 | C6 | sing | 1.40Å | 1.38Å | Aromatic |
| C5 | C4 | doub | 1.41Å | 1.36Å | Aromatic |
| N9 | C1' | sing | 1.47Å | 1.47Å | |
| N9 | C4 | sing | 1.37Å | 1.35Å | Aromatic |
| C1' | O4' | sing | 1.44Å | 1.38Å | |
| C6 | N1 | doub | 1.33Å | 1.33Å | Aromatic |
| C4 | N3 | sing | 1.33Å | 1.32Å | Aromatic |
| C4' | C5' | sing | 1.53Å | 1.49Å | |
| C4' | O4' | sing | 1.44Å | 1.48Å | |
| C5' | O5' | sing | 1.43Å | 1.40Å | |
| N1 | C2 | sing | 1.32Å | 1.40Å | Aromatic |
| N3 | C2 | doub | 1.31Å | 1.39Å | Aromatic |
| C11 | H1 | sing | 1.05Å | 1.06Å | |
| C8 | H2 | sing | 1.08Å | 1.08Å | |
| N6 | H3 | sing | 0.97Å | 1.00Å | |
| N6 | H4 | sing | 0.97Å | 1.00Å | |
| C2 | H5 | sing | 1.08Å | 1.08Å | |
| C1' | H6 | sing | 1.09Å | 1.10Å | |
| C4' | H7 | sing | 1.09Å | 1.10Å | |
| C5' | H8 | sing | 1.09Å | 1.10Å | |
| C5' | H9 | sing | 1.09Å | 1.10Å | |
| O5' | H10 | sing | 0.97Å | 0.95Å | |
| C3' | H11 | sing | 1.09Å | 1.10Å | |
| O3' | H12 | sing | 0.97Å | 0.95Å | |
| C2' | H13 | sing | 1.09Å | 1.10Å | |
| O2' | H14 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C11 | C10 | C7 | 175.4° | 179.9° |
| C10 | C11 | H1 | 180.0° | 180.0° |
| O2' | C2' | C3' | 109.0° | 110.5° |
| O2' | C2' | C1' | 109.1° | 110.5° |
| O2' | C2' | H13 | 112.4° | 110.6° |
| C2' | O2' | H14 | 109.5° | 114.0° |
| C10 | C7 | C8 | 115.7° | 126.8° |
| C10 | C7 | C5 | 132.2° | 126.8° |
| C3' | C2' | C1' | 103.6° | 104.0° |
| C2' | C3' | O3' | 111.4° | 110.5° |
| C2' | C3' | C4' | 103.9° | 104.1° |
| C2' | C3' | H11 | 110.6° | 110.7° |
| C3' | C2' | H13 | 111.1° | 110.5° |
| C2' | C1' | N9 | 109.9° | 110.4° |
| C2' | C1' | O4' | 103.7° | 104.8° |
| C2' | C1' | H6 | 110.0° | 110.4° |
| C1' | C2' | H13 | 111.3° | 110.5° |
| C8 | C7 | C5 | 111.9° | 106.4° |
| C7 | C8 | N9 | 106.3° | 109.6° |
| C7 | C8 | H2 | 126.8° | 125.2° |
| C7 | C5 | C6 | 137.0° | 135.0° |
| C7 | C5 | C4 | 103.4° | 106.2° |
| C8 | N9 | C1' | 128.0° | 124.8° |
| C8 | N9 | C4 | 108.4° | 110.4° |
| N9 | C8 | H2 | 126.9° | 125.2° |
| O3' | C3' | C4' | 108.1° | 110.5° |
| O3' | C3' | H11 | 111.9° | 110.4° |
| C3' | O3' | H12 | 109.5° | 114.0° |
| C3' | C4' | C5' | 108.3° | 110.4° |
| C3' | C4' | O4' | 104.4° | 104.8° |
| C3' | C4' | H7 | 110.5° | 110.4° |
| C4' | C3' | H11 | 110.6° | 110.5° |
| N6 | C6 | C5 | 120.0° | 120.8° |
| N6 | C6 | N1 | 118.9° | 120.8° |
| C6 | N6 | H3 | 109.5° | 120.0° |
| C6 | N6 | H4 | 109.5° | 120.0° |
| C6 | C5 | C4 | 119.7° | 118.8° |
| C5 | C6 | N1 | 121.1° | 118.3° |
| C5 | C4 | N9 | 110.0° | 107.4° |
| C5 | C4 | N3 | 120.8° | 118.5° |
| C1' | N9 | C4 | 123.6° | 124.8° |
| N9 | C1' | O4' | 110.6° | 110.4° |
| N9 | C1' | H6 | 110.5° | 110.3° |
| N9 | C4 | N3 | 129.2° | 134.1° |
| C1' | O4' | C4' | 104.0° | 105.3° |
| O4' | C1' | H6 | 111.9° | 110.3° |
| C6 | N1 | C2 | 118.8° | 121.0° |
| C4 | N3 | C2 | 120.2° | 120.8° |
| C5' | C4' | O4' | 111.7° | 110.4° |
| C4' | C5' | O5' | 103.8° | 109.5° |
| C5' | C4' | H7 | 110.8° | 110.3° |
| C4' | C5' | H8 | 110.9° | 109.5° |
| C4' | C5' | H9 | 110.9° | 109.5° |
| O4' | C4' | H7 | 110.9° | 110.4° |
| O5' | C5' | H8 | 110.9° | 109.5° |
| O5' | C5' | H9 | 110.9° | 109.4° |
| C5' | O5' | H10 | 109.5° | 114.0° |
| N1 | C2 | N3 | 119.2° | 122.7° |
| N1 | C2 | H5 | 120.4° | 118.6° |
| N3 | C2 | H5 | 120.4° | 118.7° |
| H3 | N6 | H4 | 109.5° | 120.0° |
| H8 | C5' | H9 | 109.4° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| C11 | C10 | C7 | C8 | 56.8° | 132.8° |
| C11 | C10 | C7 | C5 | 129.5° | 47.5° |
| O2' | C2' | C3' | C1' | 116.0° | 118.7° |
| O2' | C2' | C3' | H13 | 124.4° | 122.7° |
| O2' | C2' | C1' | H13 | 124.6° | 122.7° |
| O2' | C2' | C3' | O3' | 12.7° | 0.0° |
| O2' | C2' | C3' | C4' | 128.8° | 118.7° |
| O2' | C2' | C1' | N9 | 89.1° | 98.5° |
| O2' | C2' | C1' | O4' | 152.7° | 142.6° |
| O2' | C2' | C1' | H6 | 32.9° | 23.8° |
| O2' | C2' | C3' | H11 | 112.5° | 122.6° |
| C10 | C7 | C8 | C5 | 174.9° | 179.7° |
| C10 | C7 | C8 | N9 | 177.7° | 179.9° |
| C10 | C7 | C5 | C6 | 5.0° | 0.1° |
| C10 | C7 | C5 | C4 | 176.1° | 180.0° |
| C7 | C10 | C11 | H1 | 161.4° | 172.4° |
| C10 | C7 | C8 | H2 | 2.3° | 0.0° |
| C3' | C2' | C1' | H13 | 119.5° | 118.6° |
| C2' | C3' | O3' | C4' | 113.6° | 114.7° |
| C2' | C3' | O3' | H11 | 124.4° | 122.7° |
| C2' | C3' | C4' | H11 | 118.7° | 118.8° |
| C3' | C2' | C1' | N9 | 155.0° | 142.8° |
| C3' | C2' | C1' | O4' | 36.7° | 24.0° |
| C2' | C3' | C4' | C5' | 132.6° | 142.8° |
| C2' | C3' | C4' | O4' | 13.4° | 24.0° |
| C3' | C2' | C1' | H6 | 83.1° | 94.9° |
| C2' | C3' | C4' | H7 | 105.8° | 94.9° |
| C2' | C3' | O3' | H12 | 180.0° | 176.1° |
| C3' | C2' | O2' | H14 | 180.0° | 61.4° |
| C2' | C1' | N9 | C8 | 55.4° | 91.8° |
| C1' | C2' | C3' | O3' | 103.4° | 118.7° |
| C1' | C2' | C3' | C4' | 12.7° | 0.0° |
| C2' | C1' | N9 | O4' | 114.0° | 115.4° |
| C2' | C1' | N9 | H6 | 121.6° | 122.4° |
| C2' | C1' | N9 | C4 | 124.0° | 88.3° |
| C2' | C1' | O4' | H6 | 118.5° | 118.9° |
| C2' | C1' | O4' | C4' | 46.0° | 40.5° |
| C1' | C2' | C3' | H11 | 131.5° | 118.7° |
| C1' | C2' | O2' | H14 | 67.5° | 176.1° |
| C7 | C8 | N9 | H2 | 180.0° | 179.9° |
| C8 | C7 | C5 | C6 | 178.8° | 179.8° |
| C8 | C7 | C5 | C4 | 2.3° | 0.3° |
| C7 | C8 | N9 | C1' | 177.5° | 180.0° |
| C7 | C8 | N9 | C4 | 2.0° | 0.1° |
| C5 | C7 | C8 | N9 | 2.8° | 0.2° |
| C7 | C5 | C6 | N6 | 0.1° | 0.0° |
| C7 | C5 | C6 | C4 | 178.8° | 179.9° |
| C7 | C5 | C4 | N9 | 1.0° | 0.2° |
| C7 | C5 | C6 | N1 | 179.9° | 179.9° |
| C7 | C5 | C4 | N3 | 177.7° | 180.0° |
| C5 | C7 | C8 | H2 | 177.2° | 179.7° |
| C8 | N9 | C4 | C5 | 0.6° | 0.1° |
| C8 | N9 | C1' | C4 | 179.4° | 179.9° |
| C8 | N9 | C1' | O4' | 58.5° | 23.6° |
| C8 | N9 | C4 | N3 | 179.2° | 179.8° |
| C8 | N9 | C1' | H6 | 177.1° | 145.8° |
| O3' | C3' | C4' | H11 | 122.9° | 122.5° |
| O3' | C3' | C4' | C5' | 108.9° | 98.5° |
| O3' | C3' | C4' | O4' | 131.9° | 142.6° |
| O3' | C3' | C4' | H7 | 12.6° | 23.8° |
| O3' | C3' | C2' | H13 | 137.0° | 122.7° |
| C3' | C4' | O4' | C1' | 37.5° | 40.5° |
| C3' | C4' | C5' | O4' | 114.5° | 115.4° |
| C3' | C4' | C5' | H7 | 121.3° | 122.3° |
| C3' | C4' | O4' | H7 | 119.0° | 118.9° |
| C3' | C4' | C5' | O5' | 162.9° | 178.2° |
| C3' | C4' | C5' | H8 | 43.7° | 58.2° |
| C3' | C4' | C5' | H9 | 78.0° | 61.9° |
| C4' | C3' | O3' | H12 | 66.5° | 61.4° |
| C4' | C3' | C2' | H13 | 106.8° | 118.6° |
| N6 | C6 | C5 | N1 | 179.8° | 180.0° |
| N6 | C6 | C5 | C4 | 178.7° | 179.9° |
| N6 | C6 | N1 | C2 | 178.8° | 180.0° |
| C6 | N6 | H3 | H4 | 120.0° | 180.0° |
| C6 | C5 | C4 | N9 | 179.9° | 179.8° |
| C6 | C5 | C4 | N3 | 1.5° | 0.1° |
| C5 | C6 | N1 | C2 | 1.0° | 0.0° |
| C5 | C6 | N6 | H3 | 179.8° | 0.0° |
| C5 | C6 | N6 | H4 | 60.2° | 180.0° |
| C5 | C4 | N9 | C1' | 178.9° | 179.9° |
| C5 | C4 | N9 | N3 | 178.5° | 179.7° |
| C4 | C5 | C6 | N1 | 1.1° | 0.0° |
| C5 | C4 | N3 | C2 | 3.9° | 0.1° |
| N9 | C1' | O4' | H6 | 123.6° | 122.2° |
| C1' | N9 | C4 | N3 | 0.4° | 0.1° |
| N9 | C1' | O4' | C4' | 163.8° | 159.4° |
| C1' | N9 | C8 | H2 | 2.5° | 0.1° |
| N9 | C1' | C2' | H13 | 35.5° | 24.2° |
| C4 | N9 | C1' | O4' | 122.1° | 156.3° |
| N9 | C4 | N3 | C2 | 177.7° | 179.8° |
| C4 | N9 | C8 | H2 | 178.0° | 179.9° |
| C4 | N9 | C1' | H6 | 2.4° | 34.1° |
| C1' | O4' | C4' | C5' | 154.3° | 159.3° |
| C1' | O4' | C4' | H7 | 81.5° | 78.4° |
| O4' | C1' | C2' | H13 | 82.8° | 94.7° |
| C6 | N1 | C2 | N3 | 1.4° | 0.0° |
| N1 | C6 | N6 | H3 | 0.0° | 179.9° |
| N1 | C6 | N6 | H4 | 120.0° | 0.0° |
| C6 | N1 | C2 | H5 | 178.5° | 179.9° |
| C4 | N3 | C2 | N1 | 3.9° | 0.1° |
| C4 | N3 | C2 | H5 | 176.0° | 180.0° |
| C5' | C4' | O4' | H7 | 124.2° | 122.3° |
| C4' | C5' | O5' | H8 | 119.1° | 120.0° |
| C4' | C5' | O5' | H9 | 119.1° | 120.0° |
| C4' | C5' | H8 | H9 | 122.6° | 120.0° |
| C4' | C5' | O5' | H10 | 180.0° | 180.0° |
| C5' | C4' | C3' | H11 | 14.0° | 24.0° |
| O4' | C4' | C5' | O5' | 82.7° | 66.4° |
| C4' | O4' | C1' | H6 | 72.5° | 78.4° |
| O4' | C4' | C5' | H8 | 158.2° | 173.6° |
| O4' | C4' | C5' | H9 | 36.4° | 53.5° |
| O4' | C4' | C3' | H11 | 105.2° | 94.9° |
| O5' | C5' | C4' | H7 | 41.6° | 55.9° |
| O5' | C5' | H8 | H9 | 122.6° | 120.0° |
| N1 | C2 | N3 | H5 | 180.0° | 180.0° |
| H6 | C1' | C2' | H13 | 157.4° | 146.5° |
| H7 | C4' | C5' | H8 | 77.5° | 64.1° |
| H7 | C4' | C5' | H9 | 160.7° | 175.8° |
| H7 | C4' | C3' | H11 | 135.5° | 146.3° |
| H8 | C5' | O5' | H10 | 60.9° | 60.0° |
| H9 | C5' | O5' | H10 | 60.9° | 60.0° |
| H11 | C3' | O3' | H12 | 55.6° | 61.2° |
| H11 | C3' | C2' | H13 | 11.9° | 0.1° |
| H13 | C2' | O2' | H14 | 56.4° | 61.2° |
