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Summary Geometry Related PDB entries

HNG

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N2	C2	sing	1.37Å	1.35Å
N1	C2	doub	1.32Å	1.34Å
N1	C6	sing	1.34Å	1.33Å
O6	C6	doub	1.22Å	1.24Å
C2	N3	sing	1.36Å	1.36Å
C6	C5	sing	1.46Å	1.48Å
N3	C4	sing	1.37Å	1.35Å
C5	C4	doub	1.39Å	1.46Å	Aromatic
C5	C7	sing	1.46Å	1.48Å	Aromatic
C4	N9	sing	1.36Å	1.35Å	Aromatic
N11	C10	sing	1.47Å	1.46Å
C7	C10	sing	1.51Å	1.51Å
C7	C8	doub	1.34Å	1.39Å	Aromatic
N9	C8	sing	1.37Å	1.36Å	Aromatic
N3	H1	sing	0.97Å	1.00Å
C10	H2	sing	1.09Å	1.10Å
C10	H3	sing	1.09Å	1.10Å
N11	H4	sing	1.01Å	1.00Å
N11	H5	sing	1.01Å	1.00Å
C8	H7	sing	1.08Å	1.08Å
N9	H8	sing	0.97Å	1.00Å
N2	H9	sing	0.97Å	1.00Å
N2	H10	sing	0.97Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
N2	C2	N1	119.3°	118.6°
N2	C2	N3	118.0°	118.6°
C2	N2	H9	120.0°	120.0°
C2	N2	H10	120.0°	120.0°
C2	N1	C6	122.7°	121.2°
N1	C2	N3	122.7°	122.7°
N1	C6	O6	121.2°	120.8°
N1	C6	C5	117.7°	118.4°
O6	C6	C5	121.1°	120.8°
C2	N3	C4	120.6°	120.6°
C2	N3	H1	119.7°	119.7°
C6	C5	C4	117.4°	118.6°
C6	C5	C7	136.7°	134.9°
N3	C4	C5	118.8°	118.3°
N3	C4	N9	133.9°	134.1°
C4	N3	H1	119.7°	119.7°
C4	C5	C7	105.8°	106.4°
C5	C4	N9	107.3°	107.6°
C5	C7	C10	128.6°	126.7°
C5	C7	C8	104.9°	106.5°
C4	N9	C8	110.9°	110.1°
C4	N9	H8	124.6°	124.9°
N11	C10	C7	112.0°	109.5°
N11	C10	H2	108.8°	109.5°
N11	C10	H3	108.8°	109.5°
C10	N11	H4	109.5°	111.0°
C10	N11	H5	109.5°	111.0°
C10	C7	C8	126.6°	126.8°
C7	C10	H2	108.8°	109.4°
C7	C10	H3	108.8°	109.5°
C7	C8	N9	111.1°	109.4°
C7	C8	H7	124.4°	125.3°
N9	C8	H7	124.5°	125.3°
C8	N9	H8	124.6°	125.0°
H2	C10	H3	109.5°	109.5°
H4	N11	H5	109.5°	111.0°
H9	N2	H10	120.0°	119.9°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N2	C2	N1	N3	178.8°	180.0°
N2	C2	N1	C6	179.8°	179.9°
N2	C2	N3	C4	179.9°	180.0°
N2	C2	N3	H1	0.1°	0.0°
C2	N2	H9	H10	180.0°	179.9°
C2	N1	C6	O6	179.3°	180.0°
C2	N1	C6	C5	1.2°	0.1°
N1	C2	N3	C4	1.1°	0.1°
N1	C2	N3	H1	178.9°	180.0°
N1	C2	N2	H9	0.0°	0.0°
N1	C2	N2	H10	180.0°	179.9°
N1	C6	O6	C5	179.5°	179.9°
C6	N1	C2	N3	1.3°	0.1°
N1	C6	C5	C4	0.8°	0.0°
N1	C6	C5	C7	179.8°	179.9°
O6	C6	C5	C4	179.7°	179.9°
O6	C6	C5	C7	0.3°	0.1°
C2	N3	C4	H1	180.0°	180.0°
C2	N3	C4	C5	0.7°	0.0°
C2	N3	C4	N9	179.4°	180.0°
N3	C2	N2	H9	178.8°	179.9°
N3	C2	N2	H10	1.2°	0.1°
C6	C5	C4	N3	0.6°	0.0°
C6	C5	C4	C7	179.6°	180.0°
C6	C5	C4	N9	179.6°	180.0°
C6	C5	C7	C10	0.3°	0.1°
C6	C5	C7	C8	179.7°	180.0°
N3	C4	C5	N9	179.0°	180.0°
N3	C4	C5	C7	179.8°	180.0°
N3	C4	N9	C8	179.2°	180.0°
N3	C4	N9	H8	0.7°	0.0°
C4	C5	C7	C10	179.7°	180.0°
C4	C5	C7	C8	0.9°	0.0°
C5	C4	N9	C8	0.5°	0.0°
C5	C4	N3	H1	179.2°	180.0°
C5	C4	N9	H8	179.5°	180.0°
C7	C5	C4	N9	0.8°	0.0°
C5	C7	C10	N11	30.0°	80.0°
C5	C7	C10	C8	179.3°	179.9°
C5	C7	C8	N9	0.6°	0.0°
C5	C7	C10	H2	90.3°	160.0°
C5	C7	C10	H3	150.4°	40.0°
C5	C7	C8	H7	179.4°	180.0°
C4	N9	C8	C7	0.1°	0.0°
C4	N9	C8	H8	180.0°	180.0°
N9	C4	N3	H1	0.6°	0.0°
C4	N9	C8	H7	179.9°	180.0°
N11	C10	C7	H2	120.4°	120.0°
N11	C10	C7	H3	120.4°	120.0°
N11	C10	C7	C8	149.3°	99.9°
N11	C10	H2	H3	118.9°	120.0°
C10	N11	H4	H5	120.0°	123.9°
C10	C7	C8	N9	180.0°	179.9°
C7	C10	H2	H3	118.8°	120.0°
C7	C10	N11	H4	180.0°	180.0°
C7	C10	N11	H5	60.0°	56.1°
C10	C7	C8	H7	0.0°	0.1°
C7	C8	N9	H7	180.0°	180.0°
C8	C7	C10	H2	90.4°	20.1°
C8	C7	C10	H3	28.9°	140.1°
C7	C8	N9	H8	179.9°	180.0°
H2	C10	N11	H4	59.6°	60.1°
H2	C10	N11	H5	60.4°	176.0°
H3	C10	N11	H4	59.7°	60.0°
H3	C10	N11	H5	179.7°	63.9°
H7	C8	N9	H8	0.1°	0.0°

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PDB entries from 2024-07-17

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