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SummaryGeometryRelated PDB entries

HN0

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
OP3Psing1.61Å1.61Å
CC1sing1.54Å1.52Å
CC3sing1.55Å1.54Å
CHsing1.09Å1.10Å
CHAsing1.09Å1.10Å
POP1doub1.48Å1.49Å
PO5'sing1.61Å1.60Å
POP2sing1.61Å1.49Å
O1C1sing1.43Å1.40Å
C1O4sing1.44Å1.38Å
C1H1sing1.09Å1.10Å
C6N1sing1.35Å1.43Å
N1C2sing1.36Å1.40Å
N1HN1sing0.97Å1.00Å
O1HO1sing0.97Å0.95Å
C2N2sing1.37Å1.36Å
C2N3doub1.31Å1.37Å
N2C3sing1.46Å1.50Å
N2HN2sing0.97Å1.00Å
C3C7sing1.55Å1.61Å
C3H3sing1.09Å1.10Å
C4N3sing1.34Å1.41Å
C5C4doub1.40Å1.40ÅAromatic
C4N9sing1.37Å1.39ÅAromatic
O4C7sing1.44Å1.43Å
C6C5sing1.41Å1.47Å
C5N7sing1.36Å1.42ÅAromatic
O6C6doub1.22Å1.24Å
C7C9sing1.53Å1.58Å
C7H7sing1.09Å1.10Å
N7C8doub1.30Å1.32ÅAromatic
C8N9sing1.37Å1.39ÅAromatic
C8H8sing1.08Å1.08Å
C9C10sing1.53Å1.56Å
C9H9sing1.09Å1.10Å
C9H9Asing1.09Å1.10Å
N9C1'sing1.46Å1.45Å
O4'C1'sing1.44Å1.42Å
C1'C2'sing1.54Å1.51Å
C1'H1'sing1.09Å1.10Å
C11C10sing1.53Å1.56Å
C10H10sing1.09Å1.10Å
C10H10Asing1.09Å1.10Å
C11C12sing1.53Å1.55Å
C11H11sing1.09Å1.10Å
C11H11Asing1.09Å1.10Å
C13C12sing1.53Å1.54Å
C12H12sing1.09Å1.10Å
C12H12Asing1.09Å1.10Å
C13H13sing1.09Å1.10Å
C13H13Asing1.09Å1.10Å
C13H13Bsing1.09Å1.10Å
C2'C3'sing1.55Å1.51Å
C2'H2'sing1.09Å1.10Å
C2'H2'Asing1.09Å1.10Å
C4'C3'sing1.55Å1.53Å
C3'O3'sing1.43Å1.43Å
C3'H3'sing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
O4'C4'sing1.44Å1.45Å
C5'C4'sing1.53Å1.51Å
C4'H4'sing1.09Å1.10Å
C5'O5'sing1.43Å1.44Å
C5'H5'sing1.09Å1.10Å
C5'H5'Asing1.09Å1.10Å
OP3HOP3sing0.97Å0.95Å
OP2HOP2sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
OP3POP1108.2°109.5°
OP3PO5'102.6°109.5°
OP3POP2108.3°109.5°
POP3HOP3109.5°114.0°
C1CC3102.1°104.2°
C1CH111.3°110.5°
C1CHA111.3°110.5°
CC1O1114.2°109.9°
CC1O4108.0°107.3°
CC1H1109.0°109.9°
C3CH111.3°110.5°
C3CHA111.3°110.5°
CC3N2110.2°110.9°
CC3C7102.6°102.1°
CC3H3107.9°110.9°
HCHA109.5°110.6°
OP1PO5'108.3°109.4°
OP1POP2119.4°109.5°
O5'POP2108.7°109.5°
PO5'C5'118.6°123.0°
POP2HOP2109.5°114.1°
O1C1O4103.9°109.9°
O1C1H1110.6°110.0°
C1O1HO1109.5°114.0°
O4C1H1111.0°109.9°
C1O4C7105.9°107.0°
C6N1C2124.8°120.3°
C6N1HN1117.6°119.9°
N1C6C5114.6°118.4°
N1C6O6117.6°120.8°
C2N1HN1117.6°119.8°
N1C2N2116.2°119.0°
N1C2N3121.4°121.9°
N2C2N3122.4°119.0°
C2N2C3128.9°120.0°
C2N2HN2115.6°120.0°
C2N3C4114.9°121.1°
C3N2HN2115.5°120.0°
N2C3C7119.9°110.9°
N2C3H3108.5°110.8°
C7C3H3107.1°110.9°
C3C7O4105.4°103.5°
C3C7C9120.6°110.6°
C3C7H7107.7°110.6°
N3C4C5127.4°119.7°
N3C4N9126.6°134.2°
C5C4N9106.0°106.1°
C4C5C6116.8°118.6°
C4C5N7110.7°107.3°
C4N9C8105.4°107.5°
C4N9C1'124.6°126.3°
O4C7C9104.7°110.6°
O4C7H7110.1°110.6°
C6C5N7132.5°134.1°
C5C6O6127.8°120.8°
C5N7C8103.1°109.3°
C9C7H7108.0°110.7°
C7C9C10118.1°109.5°
C7C9H9107.3°109.5°
C7C9H9A107.3°109.4°
N7C8N9114.8°109.8°
N7C8H8122.6°125.2°
N9C8H8122.6°125.1°
C8N9C1'130.1°126.2°
C10C9H9107.3°109.5°
C10C9H9A107.3°109.4°
C9C10C11111.8°109.5°
C9C10H10108.9°109.5°
C9C10H10A108.9°109.5°
H9C9H9A109.5°109.5°
N9C1'O4'109.8°109.9°
N9C1'C2'116.6°109.9°
N9C1'H1'108.7°109.9°
O4'C1'C2'104.5°107.3°
O4'C1'H1'109.1°110.0°
C1'O4'C4'106.3°107.0°
C2'C1'H1'107.9°109.8°
C1'C2'C3'96.0°104.2°
C1'C2'H2'112.7°110.5°
C1'C2'H2'A112.7°110.5°
C11C10H10108.9°109.5°
C11C10H10A108.9°109.4°
C10C11C12114.4°109.5°
C10C11H11108.2°109.5°
C10C11H11A108.2°109.4°
H10C10H10A109.4°109.4°
C12C11H11108.2°109.5°
C12C11H11A108.2°109.5°
C11C12C13114.6°109.4°
C11C12H12108.2°109.5°
C11C12H12A108.2°109.5°
H11C11H11A109.5°109.5°
C13C12H12108.2°109.4°
C13C12H12A108.2°109.4°
C12C13H13109.5°109.5°
C12C13H13A109.5°109.5°
C12C13H13B109.5°109.5°
H12C12H12A109.5°109.5°
H13C13H13A109.5°109.5°
H13C13H13B109.5°109.5°
H13AC13H13B109.5°109.4°
C3'C2'H2'112.7°110.5°
C3'C2'H2'A112.7°110.5°
C2'C3'C4'101.8°102.1°
C2'C3'O3'105.6°110.9°
C2'C3'H3'111.9°111.0°
H2'C2'H2'A109.5°110.5°
C4'C3'O3'112.1°110.9°
C4'C3'H3'111.6°110.9°
C3'C4'O4'104.8°103.5°
C3'C4'C5'114.4°110.6°
C3'C4'H4'108.9°110.6°
O3'C3'H3'113.2°110.7°
C3'O3'HO3'109.5°114.0°
O4'C4'C5'109.7°110.8°
O4'C4'H4'109.9°110.6°
C5'C4'H4'109.1°110.5°
C4'C5'O5'112.2°109.4°
C4'C5'H5'108.8°109.4°
C4'C5'H5'A108.8°109.5°
O5'C5'H5'108.8°109.5°
O5'C5'H5'A108.8°109.5°
H5'C5'H5'A109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
OP3POP1O5'110.6°120.0°
OP3POP1OP2124.4°120.0°
OP3PO5'OP2114.6°120.0°
OP3PO5'C5'64.7°65.0°
OP3POP2HOP2124.4°60.0°
C1CC3H118.8°118.6°
C1CC3HA118.8°118.7°
C1CHHA123.4°122.7°
CC1O1O4117.4°117.8°
CC1O1H1123.4°121.1°
CC1O4H1119.4°119.5°
CC1O1HO1180.0°180.0°
C1CC3N2115.5°97.3°
C1CC3C713.3°20.9°
C1CC3H3126.2°139.1°
CC1O4C742.4°26.5°
C3CHHA123.4°122.6°
C3CC1O1149.3°117.4°
C3CC1O434.3°2.0°
C3CC1H186.4°121.4°
CC3N2C2125.4°86.5°
CC3N2C7118.7°112.8°
CC3N2H3117.9°123.6°
CC3N2HN254.6°93.6°
CC3C7H3113.6°118.2°
CC3C7O49.7°37.1°
CC3C7C9108.3°155.5°
CC3C7H7127.2°81.4°
HCC1O191.8°124.0°
HCC1O4153.1°116.6°
HCC1H132.5°2.8°
HCC3N23.3°21.3°
HCC3C7132.1°139.6°
HCC3H3115.0°102.3°
HACC1O130.5°1.3°
HACC1O484.5°120.6°
HACC1H1154.8°119.9°
HACC3N2125.7°144.0°
HACC3C7105.5°97.8°
HACC3H37.4°20.4°
OP1PO5'OP2131.1°120.0°
OP1PO5'C5'49.6°55.0°
OP1POP3HOP30.0°179.9°
OP1POP2HOP20.0°60.1°
PO5'C5'C4'169.3°180.0°
PO5'C5'H5'70.3°60.1°
PO5'C5'H5'A48.9°60.0°
O5'POP3HOP3114.4°60.0°
O5'POP2HOP2124.8°180.0°
OP2PO5'C5'179.3°175.0°
OP2POP3HOP3130.7°60.0°
O1C1O4H1118.9°121.1°
O1C1O4C7164.1°92.9°
O4C1O1HO162.6°62.2°
C1O4C7C331.6°40.0°
C1O4C7C996.7°158.5°
C1O4C7H7147.4°78.4°
H1C1O1HO156.6°58.9°
H1C1O4C777.0°145.9°
C6N1C2HN1180.0°179.8°
C6N1C2N2179.9°179.7°
C6N1C2N30.2°0.3°
N1C6C5C40.3°0.6°
N1C6C5O6179.3°179.4°
N1C6C5N7179.9°179.8°
N1C2N2N3179.9°180.0°
N1C2N2C3179.5°180.0°
N1C2N2HN20.5°0.0°
N1C2N3C40.2°0.0°
C2N1C6C50.3°0.6°
C2N1C6O6179.7°180.0°
HN1N1C2N20.1°0.0°
HN1N1C2N3179.8°180.0°
HN1N1C6C5179.7°179.7°
HN1N1C6O60.3°0.2°
C2N2C3HN2180.0°180.0°
C2N2C3C7115.9°160.8°
C2N2C3H37.5°37.2°
N2C2N3C4179.9°180.0°
N3C2N2C30.6°0.0°
N3C2N2HN2179.4°180.0°
C2N3C4C50.2°0.0°
C2N3C4N9179.1°180.0°
N2C3C7H3124.0°123.6°
N2C3C7O4132.1°81.2°
N2C3C7C914.1°37.3°
N2C3C7H7110.4°160.3°
HN2N2C3C764.1°19.2°
HN2N2C3H3172.5°142.8°
C3C7O4C9128.3°118.5°
C3C7O4H7115.8°118.5°
C3C7C9H7124.3°123.0°
C3C7C9C10170.0°175.0°
C3C7C9H948.8°65.0°
C3C7C9H9A68.7°55.1°
H3C3C7O4103.8°155.2°
H3C3C7C9138.1°86.3°
H3C3C7H713.6°36.8°
N3C4C5N9179.1°180.0°
N3C4C5C60.3°0.3°
N3C4C5N7179.9°180.0°
N3C4N9C8179.7°180.0°
N3C4N9C1'0.6°0.0°
C4C5C6N7179.7°179.6°
C4C5C6O6179.7°180.0°
C4C5N7C80.7°0.0°
C5C4N9C80.7°0.0°
C5C4N9C1'178.5°180.0°
N9C4C5C6179.4°179.7°
N9C4C5N70.8°0.0°
C4N9C8N70.3°0.0°
C4N9C8C1'179.1°180.0°
C4N9C8H8179.8°180.0°
C4N9C1'O4'79.1°157.2°
C4N9C1'C2'162.4°85.0°
C4N9C1'H1'40.2°36.0°
O4C7C9H7117.3°123.0°
O4C7C9C1051.7°71.0°
O4C7C9H969.6°49.0°
O4C7C9H9A172.9°169.1°
C6C5N7C8179.6°179.7°
N7C5C6O60.6°0.4°
C5N7C8N90.2°0.0°
C5N7C8H8179.7°180.0°
C7C9C10H9121.2°120.0°
C7C9C10H9A121.2°119.9°
C7C9H9H9A116.1°120.0°
C7C9C10C11179.5°180.0°
C7C9C10H1060.1°59.9°
C7C9C10H10A59.1°60.0°
H7C7C9C1065.6°52.0°
H7C7C9H9173.1°172.0°
H7C7C9H9A55.6°67.9°
N7C8N9H8180.0°180.0°
N7C8N9C1'178.8°180.0°
C8N9C1'O4'102.0°22.9°
C8N9C1'C2'16.5°95.0°
C8N9C1'H1'138.7°144.1°
H8C8N9C1'1.2°0.0°
C10C9H9H9A116.1°120.0°
C9C10C11H10120.4°120.1°
C9C10C11H10A120.4°120.0°
C9C10H10H10A118.9°120.0°
C9C10C11C12179.8°180.0°
C9C10C11H1159.4°60.0°
C9C10C11H11A59.1°60.1°
H9C9C10C1158.3°60.0°
H9C9C10H10178.6°179.9°
H9C9C10H10A62.1°60.0°
H9AC9C10C1159.2°60.1°
H9AC9C10H1061.1°60.0°
H9AC9C10H10A179.6°180.0°
N9C1'O4'C2'125.8°119.5°
N9C1'O4'H1'119.0°121.1°
N9C1'C2'H1'122.6°121.0°
N9C1'C2'C3'171.6°121.5°
N9C1'C2'H2'70.6°119.8°
N9C1'C2'H2'A53.9°2.8°
N9C1'O4'C4'160.9°145.9°
O4'C1'C2'H1'116.1°119.6°
O4'C1'C2'C3'50.3°2.0°
O4'C1'C2'H2'168.0°120.7°
O4'C1'C2'H2'A67.5°116.7°
C1'O4'C4'C3'4.5°40.0°
C1'O4'C4'C5'127.8°158.6°
C1'O4'C4'H4'112.3°78.4°
C1'C2'C3'H2'117.7°118.7°
C1'C2'C3'H2'A117.7°118.7°
C1'C2'H2'H2'A126.3°122.6°
C1'C2'C3'C4'45.3°20.9°
C1'C2'C3'O3'71.9°139.1°
C1'C2'C3'H3'164.6°97.4°
C2'C1'O4'C4'35.1°26.5°
H1'C1'C2'C3'65.8°117.6°
H1'C1'C2'H2'51.9°1.1°
H1'C1'C2'H2'A176.5°123.8°
H1'C1'O4'C4'80.1°93.0°
C11C10H10H10A118.9°119.9°
C10C11C12H11120.7°120.0°
C10C11C12H11A120.7°119.9°
C10C11H11H11A117.8°120.0°
C10C11C12C13112.0°180.0°
C10C11C12H12127.2°60.0°
C10C11C12H12A8.8°60.1°
H10C10C11C1259.4°59.9°
H10C10C11H11179.8°179.9°
H10C10C11H11A61.3°60.0°
H10AC10C11C1259.8°60.0°
H10AC10C11H1160.9°60.0°
H10AC10C11H11A179.5°180.0°
C12C11H11H11A117.7°120.0°
C11C12C13H12120.7°120.0°
C11C12C13H12A120.8°120.0°
C11C12H12H12A117.7°120.1°
C11C12C13H13180.0°60.0°
C11C12C13H13A60.0°60.0°
C11C12C13H13B60.0°180.0°
H11C11C12C138.7°60.1°
H11C11C12H12112.0°180.0°
H11C11C12H12A129.5°59.9°
H11AC11C12C13127.2°60.0°
H11AC11C12H126.5°59.9°
H11AC11C12H12A112.0°180.0°
C13C12H12H12A117.7°120.0°
C12C13H13H13A120.0°120.1°
C12C13H13H13B120.0°120.0°
C12C13H13AH13B120.0°120.0°
H12C12C13H1359.3°180.0°
H12C12C13H13A179.3°60.0°
H12C12C13H13B60.7°60.0°
H12AC12C13H1359.2°60.0°
H12AC12C13H13A60.8°180.0°
H12AC12C13H13B179.2°60.0°
H13C13H13AH13B120.0°120.0°
C3'C2'H2'H2'A126.3°122.6°
C2'C3'C4'O3'112.4°118.2°
C2'C3'C4'H3'119.4°118.3°
C2'C3'O3'H3'122.7°123.7°
C2'C3'O3'HO3'180.0°61.4°
C2'C3'C4'O4'27.0°37.0°
C2'C3'C4'C5'93.2°155.7°
C2'C3'C4'H4'144.5°81.5°
H2'C2'C3'C4'163.0°97.8°
H2'C2'C3'O3'45.8°20.4°
H2'C2'C3'H3'77.7°143.9°
H2'AC2'C3'C4'72.4°139.6°
H2'AC2'C3'O3'170.4°102.2°
H2'AC2'C3'H3'46.8°21.3°
C4'C3'O3'H3'127.3°123.6°
C4'C3'O3'HO3'70.0°174.2°
C3'C4'O4'C5'123.2°118.6°
C3'C4'O4'H4'116.8°118.5°
C3'C4'C5'H4'122.2°122.8°
C3'C4'C5'O5'10.2°175.0°
C3'C4'C5'H5'130.6°55.0°
C3'C4'C5'H5'A110.2°65.0°
O3'C3'C4'O4'85.4°155.2°
O3'C3'C4'C5'154.4°86.1°
O3'C3'C4'H4'32.1°36.7°
H3'C3'O3'HO3'57.3°62.2°
H3'C3'C4'O4'146.4°81.3°
H3'C3'C4'C5'26.2°37.4°
H3'C3'C4'H4'96.1°160.2°
O4'C4'C5'H4'120.5°123.0°
O4'C4'C5'O5'107.1°70.9°
O4'C4'C5'H5'13.3°169.2°
O4'C4'C5'H5'A132.5°49.1°
C4'C5'O5'H5'120.4°120.0°
C4'C5'O5'H5'A120.4°120.0°
C4'C5'H5'H5'A118.8°120.0°
H4'C4'C5'O5'132.4°52.2°
H4'C4'C5'H5'107.2°67.8°
H4'C4'C5'H5'A12.0°172.2°
O5'C5'H5'H5'A118.7°120.0°

221716

PDB entries from 2024-06-26

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