HM9
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C | SAE | sing | 1.76Å | 1.70Å | |
| C | CAC | sing | 1.48Å | 1.45Å | |
| C | OXT | doub | 1.22Å | 1.33Å | |
| CAC | NAB | doub | 1.33Å | 1.38Å | Aromatic |
| CAC | CAF | sing | 1.40Å | 1.39Å | Aromatic |
| NAB | CAA | sing | 1.32Å | 1.35Å | Aromatic |
| CAF | OAG | sing | 1.35Å | 1.27Å | |
| CAF | NAH | doub | 1.33Å | 1.39Å | Aromatic |
| NAH | CAI | sing | 1.33Å | 1.35Å | Aromatic |
| CAI | OAJ | sing | 1.36Å | 1.29Å | |
| CAI | CAA | doub | 1.40Å | 1.42Å | Aromatic |
| CAA | CBW | sing | 1.51Å | 1.47Å | |
| CBW | CBX | sing | 1.53Å | 1.55Å | |
| CBX | CBY | sing | 1.53Å | 1.51Å | |
| CBY | NBZ | sing | 1.47Å | 1.47Å | |
| NBZ | CCA | sing | 1.37Å | 1.34Å | |
| CCA | NCC | doub | 1.30Å | 1.33Å | |
| CCA | NCB | sing | 1.38Å | 1.33Å | |
| SAE | HAE | sing | 1.41Å | 1.30Å | |
| OAG | HAG | sing | 0.97Å | 0.95Å | |
| OAJ | HAJ | sing | 0.97Å | 0.95Å | |
| CBW | HBW1 | sing | 1.09Å | 1.10Å | |
| CBW | HBW2 | sing | 1.09Å | 1.10Å | |
| CBX | HBX1 | sing | 1.09Å | 1.10Å | |
| CBX | HBX2 | sing | 1.09Å | 1.10Å | |
| CBY | HBY1 | sing | 1.09Å | 1.10Å | |
| CBY | HBY2 | sing | 1.09Å | 1.10Å | |
| NBZ | HBZ | sing | 0.97Å | 1.00Å | |
| NCC | HCC | sing | 0.97Å | 1.00Å | |
| NCB | HCB1 | sing | 0.97Å | 1.00Å | |
| NCB | HCB2 | sing | 0.97Å | 1.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| SAE | C | CAC | 122.2° | 120.0° |
| SAE | C | OXT | 119.1° | 120.1° |
| C | SAE | HAE | 102.0° | 100.0° |
| CAC | C | OXT | 118.5° | 119.9° |
| C | CAC | NAB | 116.4° | 120.1° |
| C | CAC | CAF | 122.6° | 120.1° |
| NAB | CAC | CAF | 120.8° | 119.8° |
| CAC | NAB | CAA | 121.7° | 120.0° |
| CAC | CAF | OAG | 126.9° | 120.1° |
| CAC | CAF | NAH | 116.6° | 119.8° |
| NAB | CAA | CAI | 118.4° | 120.2° |
| NAB | CAA | CBW | 120.1° | 119.8° |
| OAG | CAF | NAH | 116.4° | 120.1° |
| CAF | OAG | HAG | 109.5° | 113.9° |
| CAF | NAH | CAI | 122.9° | 119.9° |
| NAH | CAI | OAJ | 117.7° | 119.9° |
| NAH | CAI | CAA | 119.4° | 120.2° |
| OAJ | CAI | CAA | 122.8° | 119.9° |
| CAI | OAJ | HAJ | 109.5° | 114.0° |
| CAI | CAA | CBW | 121.4° | 119.9° |
| CAA | CBW | CBX | 114.8° | 109.4° |
| CAA | CBW | HBW1 | 107.8° | 109.4° |
| CAA | CBW | HBW2 | 107.7° | 109.5° |
| CBW | CBX | CBY | 110.2° | 109.4° |
| CBX | CBW | HBW1 | 107.7° | 109.5° |
| CBX | CBW | HBW2 | 107.7° | 109.5° |
| CBW | CBX | HBX1 | 109.2° | 109.5° |
| CBW | CBX | HBX2 | 109.2° | 109.5° |
| CBX | CBY | NBZ | 114.3° | 109.4° |
| CBY | CBX | HBX1 | 109.3° | 109.4° |
| CBY | CBX | HBX2 | 109.2° | 109.5° |
| CBX | CBY | HBY1 | 107.9° | 109.5° |
| CBX | CBY | HBY2 | 107.9° | 109.5° |
| CBY | NBZ | CCA | 123.2° | 120.0° |
| NBZ | CBY | HBY1 | 107.9° | 109.4° |
| NBZ | CBY | HBY2 | 107.9° | 109.5° |
| CBY | NBZ | HBZ | 118.4° | 120.0° |
| NBZ | CCA | NCC | 122.1° | 120.0° |
| NBZ | CCA | NCB | 119.8° | 120.0° |
| CCA | NBZ | HBZ | 118.4° | 120.0° |
| NCC | CCA | NCB | 118.1° | 120.0° |
| CCA | NCC | HCC | 112.0° | 120.1° |
| CCA | NCB | HCB1 | 120.0° | 120.0° |
| CCA | NCB | HCB2 | 120.0° | 120.0° |
| HBW1 | CBW | HBW2 | 111.2° | 109.5° |
| HBX1 | CBX | HBX2 | 109.7° | 109.5° |
| HBY1 | CBY | HBY2 | 111.0° | 109.5° |
| HCB1 | NCB | HCB2 | 120.0° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| SAE | C | CAC | OXT | 175.5° | 179.7° |
| SAE | C | CAC | NAB | 1.3° | 0.0° |
| SAE | C | CAC | CAF | 176.4° | 179.7° |
| C | CAC | NAB | CAF | 175.2° | 179.7° |
| C | CAC | NAB | CAA | 176.6° | 180.0° |
| C | CAC | CAF | OAG | 4.2° | 0.0° |
| C | CAC | CAF | NAH | 178.4° | 180.0° |
| CAC | C | SAE | HAE | 175.4° | 180.0° |
| OXT | C | CAC | NAB | 174.1° | 179.7° |
| OXT | C | CAC | CAF | 0.9° | 0.0° |
| OXT | C | SAE | HAE | 0.0° | 0.3° |
| NAB | CAC | CAF | OAG | 179.1° | 179.7° |
| NAB | CAC | CAF | NAH | 3.5° | 0.2° |
| CAC | NAB | CAA | CAI | 1.2° | 0.0° |
| CAC | NAB | CAA | CBW | 180.0° | 180.0° |
| CAF | CAC | NAB | CAA | 1.5° | 0.3° |
| CAC | CAF | OAG | NAH | 177.4° | 179.9° |
| CAC | CAF | NAH | CAI | 3.0° | 0.1° |
| CAC | CAF | OAG | HAG | 4.2° | 90.1° |
| NAB | CAA | CAI | NAH | 1.8° | 0.3° |
| NAB | CAA | CAI | OAJ | 179.0° | 180.0° |
| NAB | CAA | CAI | CBW | 178.7° | 180.0° |
| NAB | CAA | CBW | CBX | 90.5° | 90.0° |
| NAB | CAA | CBW | HBW1 | 29.5° | 150.0° |
| NAB | CAA | CBW | HBW2 | 149.5° | 30.0° |
| OAG | CAF | NAH | CAI | 179.3° | 180.0° |
| CAF | NAH | CAI | OAJ | 177.0° | 180.0° |
| CAF | NAH | CAI | CAA | 0.4° | 0.3° |
| NAH | CAF | OAG | HAG | 178.4° | 90.0° |
| NAH | CAI | OAJ | CAA | 177.3° | 179.7° |
| NAH | CAI | CAA | CBW | 179.5° | 179.7° |
| NAH | CAI | OAJ | HAJ | 0.0° | 90.0° |
| OAJ | CAI | CAA | CBW | 2.3° | 0.0° |
| CAI | CAA | CBW | CBX | 88.2° | 90.0° |
| CAA | CAI | OAJ | HAJ | 177.2° | 90.3° |
| CAI | CAA | CBW | HBW1 | 151.8° | 30.0° |
| CAI | CAA | CBW | HBW2 | 31.8° | 150.0° |
| CAA | CBW | CBX | HBW1 | 120.0° | 120.0° |
| CAA | CBW | CBX | HBW2 | 120.0° | 120.0° |
| CAA | CBW | CBX | CBY | 172.3° | 180.0° |
| CAA | CBW | HBW1 | HBW2 | 117.8° | 120.0° |
| CAA | CBW | CBX | HBX1 | 67.7° | 60.0° |
| CAA | CBW | CBX | HBX2 | 52.3° | 60.0° |
| CBW | CBX | CBY | HBX1 | 120.0° | 120.0° |
| CBW | CBX | CBY | HBX2 | 120.0° | 120.0° |
| CBW | CBX | CBY | NBZ | 175.0° | 180.0° |
| CBX | CBW | HBW1 | HBW2 | 117.8° | 120.0° |
| CBW | CBX | HBX1 | HBX2 | 119.7° | 120.0° |
| CBW | CBX | CBY | HBY1 | 65.0° | 60.1° |
| CBW | CBX | CBY | HBY2 | 55.0° | 60.0° |
| CBX | CBY | NBZ | HBY1 | 120.0° | 120.0° |
| CBX | CBY | NBZ | HBY2 | 120.0° | 120.0° |
| CBX | CBY | NBZ | CCA | 81.9° | 180.0° |
| CBY | CBX | CBW | HBW1 | 52.3° | 60.0° |
| CBY | CBX | CBW | HBW2 | 67.7° | 60.0° |
| CBY | CBX | HBX1 | HBX2 | 119.7° | 120.0° |
| CBX | CBY | HBY1 | HBY2 | 118.0° | 120.1° |
| CBX | CBY | NBZ | HBZ | 98.2° | 0.1° |
| CBY | NBZ | CCA | HBZ | 180.0° | 179.9° |
| CBY | NBZ | CCA | NCC | 3.4° | 179.9° |
| CBY | NBZ | CCA | NCB | 174.2° | 0.1° |
| NBZ | CBY | CBX | HBX1 | 55.0° | 60.0° |
| NBZ | CBY | CBX | HBX2 | 65.0° | 60.0° |
| NBZ | CBY | HBY1 | HBY2 | 118.0° | 120.0° |
| NBZ | CCA | NCC | NCB | 177.6° | 180.0° |
| CCA | NBZ | CBY | HBY1 | 38.1° | 60.1° |
| CCA | NBZ | CBY | HBY2 | 158.1° | 60.0° |
| NBZ | CCA | NCC | HCC | 177.6° | 180.0° |
| NBZ | CCA | NCB | HCB1 | 177.7° | 0.0° |
| NBZ | CCA | NCB | HCB2 | 2.3° | 180.0° |
| NCC | CCA | NBZ | HBZ | 176.6° | 0.1° |
| NCC | CCA | NCB | HCB1 | 0.0° | 180.0° |
| NCC | CCA | NCB | HCB2 | 180.0° | 0.0° |
| NCB | CCA | NBZ | HBZ | 5.8° | 179.9° |
| NCB | CCA | NCC | HCC | 0.0° | 0.0° |
| CCA | NCB | HCB1 | HCB2 | 180.0° | 180.0° |
| HBW1 | CBW | CBX | HBX1 | 172.3° | 180.0° |
| HBW1 | CBW | CBX | HBX2 | 67.7° | 60.0° |
| HBW2 | CBW | CBX | HBX1 | 52.3° | 60.0° |
| HBW2 | CBW | CBX | HBX2 | 172.3° | 180.0° |
| HBX1 | CBX | CBY | HBY1 | 175.0° | 179.9° |
| HBX1 | CBX | CBY | HBY2 | 65.0° | 60.0° |
| HBX2 | CBX | CBY | HBY1 | 55.0° | 59.9° |
| HBX2 | CBX | CBY | HBY2 | 175.0° | 180.0° |
| HBY1 | CBY | NBZ | HBZ | 141.9° | 120.1° |
| HBY2 | CBY | NBZ | HBZ | 21.8° | 119.9° |
