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SummaryGeometryRelated PDB entries

HM8

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
NCAsing1.47Å1.44Å
CACAVsing1.53Å1.54Å
CACAZsing1.51Å1.51Å
CAVCAWsing1.53Å1.53Å
CAVOBWsing1.43Å1.45Å
OBWSBVsing1.52Å1.61Å
SBVOBZdoub1.42Å1.43Å
SBVOBYdoub1.42Å1.41Å
SBVOBXsing1.52Å1.45Å
CAZNBAdoub1.30Å1.27ÅAromatic
CAZOBBsing1.34Å1.38ÅAromatic
NBACABsing1.36Å1.38ÅAromatic
OBBCBCsing1.34Å1.45ÅAromatic
CBCOBDsing1.35Å1.21Å
CBCCABdoub1.38Å1.40ÅAromatic
CABCsing1.46Å1.43Å
CSBGdoub1.71Å1.71Å
COXTsing1.35Å1.33Å
NHsing1.01Å1.00Å
NH2sing1.01Å1.00Å
CAHAsing1.09Å1.10Å
CAVHAVsing1.09Å1.10Å
CAWHAW1sing1.09Å1.10Å
CAWHAW2sing1.09Å1.10Å
CAWHAW3sing1.09Å1.10Å
OBXHBXsing0.97Å0.95Å
OBDHBDsing0.97Å0.95Å
OXTHXTsing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
NCACAV110.8°109.5°
NCACAZ112.6°109.5°
CANH109.5°111.0°
CANH2109.5°111.0°
NCAHA106.2°109.5°
CAVCACAZ109.3°109.5°
CACAVCAW114.6°109.4°
CACAVOBW105.2°109.5°
CAVCAHA109.8°109.5°
CACAVHAV108.4°109.5°
CACAZNBA128.1°125.2°
CACAZOBB117.0°125.1°
CAZCAHA107.9°109.4°
CAWCAVOBW107.5°109.5°
CAWCAVHAV106.1°109.5°
CAVCAWHAW1109.5°109.5°
CAVCAWHAW2109.5°109.5°
CAVCAWHAW3109.5°109.6°
CAVOBWSBV117.7°114.0°
OBWCAVHAV115.3°109.5°
OBWSBVOBZ105.5°106.5°
OBWSBVOBY107.6°106.4°
OBWSBVOBX100.4°107.2°
OBZSBVOBY112.9°123.2°
OBZSBVOBX113.8°106.4°
OBYSBVOBX115.2°106.4°
SBVOBXHBX109.5°114.0°
NBACAZOBB113.9°109.7°
CAZNBACAB107.3°108.7°
CAZOBBCBC104.9°108.3°
NBACABCBC110.2°106.7°
NBACABC122.8°126.6°
OBBCBCOBD118.9°126.7°
OBBCBCCAB103.6°106.6°
OBDCBCCAB137.4°126.7°
CBCOBDHBD109.5°114.0°
CBCCABC126.9°126.7°
CABCSBG119.7°120.0°
CABCOXT117.2°120.0°
SBGCOXT123.1°120.0°
COXTHXT109.5°114.0°
HNH2109.4°111.0°
HAW1CAWHAW2109.5°109.4°
HAW1CAWHAW3109.5°109.4°
HAW2CAWHAW3109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
NCACAVCAZ124.7°120.0°
NCACAVHA117.1°120.0°
NCACAZHA117.0°120.0°
NCACAVCAW174.1°55.0°
NCACAVOBW68.1°65.0°
NCACAZNBA54.6°135.0°
NCACAZOBB137.4°45.4°
CANHH2120.0°123.9°
NCACAVHAV55.8°175.0°
CAVCACAZHA119.4°120.0°
CACAVCAWOBW116.5°120.0°
CACAVCAWHAV119.6°120.0°
CACAVOBWHAV119.4°120.0°
CACAVOBWSBV123.3°145.0°
CAVCACAZNBA69.0°105.0°
CAVCACAZOBB98.9°74.7°
CAVCANH180.0°176.1°
CAVCANH260.0°60.0°
CACAVCAWHAW1180.0°180.0°
CACAVCAWHAW260.0°60.1°
CACAVCAWHAW360.0°60.0°
CAZCACAVCAW49.4°175.0°
CAZCACAVOBW167.2°55.0°
CACAZNBAOBB168.3°179.7°
CACAZNBACAB169.1°180.0°
CACAZOBBCBC169.6°180.0°
CAZCANH57.2°63.9°
CAZCANH262.8°60.0°
CAZCACAVHAV68.9°65.0°
CAWCAVOBWHAV118.1°120.0°
CAWCAVOBWSBV114.2°95.0°
CAWCAVCAHA68.8°65.0°
CAVCAWHAW1HAW2120.0°120.0°
CAVCAWHAW1HAW3120.0°120.1°
CAVCAWHAW2HAW3120.0°120.1°
CAVOBWSBVOBZ56.4°171.5°
CAVOBWSBVOBY64.3°38.5°
CAVOBWSBVOBX174.8°75.0°
OBWCAVCAHA49.0°175.0°
OBWCAVCAWHAW163.5°60.0°
OBWCAVCAWHAW2176.5°180.0°
OBWCAVCAWHAW356.5°60.0°
OBWSBVOBZOBY117.2°123.0°
OBWSBVOBZOBX109.1°114.1°
OBWSBVOBYOBX111.0°114.1°
SBVOBWCAVHAV3.9°25.0°
OBWSBVOBXHBX112.2°179.9°
OBZSBVOBYOBX133.0°122.9°
OBZSBVOBXHBX0.0°66.5°
OBYSBVOBXHBX132.6°66.4°
NBACAZOBBCBC0.1°0.2°
CAZNBACABCBC1.5°0.2°
CAZNBACABC178.2°180.0°
NBACAZCAHA171.6°15.0°
OBBCAZNBACAB0.8°0.3°
CAZOBBCBCOBD180.0°180.0°
CAZOBBCBCCAB1.0°0.1°
OBBCAZCAHA20.4°165.3°
NBACABCBCOBB1.5°0.0°
NBACABCBCOBD179.8°179.8°
NBACABCBCC176.6°179.8°
NBACABCSBG7.0°180.0°
NBACABCOXT172.3°0.1°
OBBCBCOBDCAB178.6°179.8°
OBBCBCCABC178.0°179.8°
OBBCBCOBDHBD0.0°0.0°
OBDCBCCABC3.2°0.0°
CBCCABCSBG176.9°0.2°
CBCCABCOXT3.8°179.8°
CABCBCOBDHBD178.6°179.9°
CABCSBGOXT179.3°179.9°
CABCOXTHXT179.3°180.0°
SBGCOXTHXT0.0°0.1°
HNCAHA60.7°56.0°
H2NCAHA179.3°180.0°
HACACAVHAV172.9°55.0°
HAVCAVCAWHAW160.4°60.0°
HAVCAVCAWHAW259.6°59.9°
HAVCAVCAWHAW3179.6°180.0°
HAW1CAWHAW2HAW3120.0°119.9°

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PDB entries from 2024-10-09

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