English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

HHH

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C10	O12	sing	1.34Å	1.26Å
O12	HO12	sing	0.97Å	0.95Å
O11	C10	doub	1.21Å	1.25Å
C10	C7	sing	1.51Å	1.51Å
C7	O8	sing	1.43Å	1.44Å
C7	C1	sing	1.51Å	1.50Å
C7	H7	sing	1.09Å	1.10Å
O8	HO8	sing	0.97Å	0.95Å
C6	C1	doub	1.38Å	1.39Å	Aromatic
C1	C2	sing	1.38Å	1.41Å	Aromatic
C2	C3	doub	1.38Å	1.39Å	Aromatic
C2	H2	sing	1.08Å	1.08Å
C4	C3	sing	1.39Å	1.38Å	Aromatic
C3	H3	sing	1.08Å	1.08Å
C6	C5	sing	1.38Å	1.38Å	Aromatic
C6	H6	sing	1.08Å	1.08Å
C5	C4	doub	1.39Å	1.44Å	Aromatic
C5	H5	sing	1.08Å	1.08Å
C4	O1	sing	1.36Å	1.37Å
O1	HO1	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C10	O12	HO12	109.5°	116.9°
O12	C10	O11	119.7°	120.0°
O12	C10	C7	123.7°	119.9°
O11	C10	C7	116.6°	120.0°
C10	C7	O8	103.8°	109.5°
C10	C7	C1	115.6°	109.4°
C10	C7	H7	110.0°	109.5°
O8	C7	C1	111.4°	109.5°
O8	C7	H7	114.2°	109.5°
C7	O8	HO8	109.5°	114.0°
C1	C7	H7	102.1°	109.5°
C7	C1	C6	119.0°	119.9°
C7	C1	C2	120.3°	120.0°
C6	C1	C2	120.6°	120.1°
C1	C6	C5	120.0°	120.0°
C1	C6	H6	120.0°	120.0°
C1	C2	C3	120.3°	120.1°
C1	C2	H2	119.9°	120.0°
C3	C2	H2	119.8°	120.0°
C2	C3	C4	119.2°	120.0°
C2	C3	H3	120.4°	120.0°
C4	C3	H3	120.4°	120.0°
C3	C4	C5	120.9°	119.9°
C3	C4	O1	116.6°	120.1°
C5	C6	H6	120.0°	120.0°
C6	C5	C4	119.0°	120.0°
C6	C5	H5	120.5°	120.0°
C4	C5	H5	120.5°	120.0°
C5	C4	O1	122.6°	120.1°
C4	O1	HO1	109.5°	114.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O12	C10	O11	C7	179.3°	180.0°
O12	C10	C7	O8	154.1°	175.0°
O12	C10	C7	C1	31.7°	65.0°
O12	C10	C7	H7	83.2°	55.0°
HO12	O12	C10	O11	0.0°	0.0°
HO12	O12	C10	C7	179.3°	180.0°
O11	C10	C7	O8	26.6°	5.0°
O11	C10	C7	C1	149.0°	115.0°
O11	C10	C7	H7	96.1°	125.0°
C10	C7	O8	C1	125.1°	120.0°
C10	C7	O8	H7	119.8°	120.0°
C10	C7	C1	H7	119.4°	120.0°
C10	C7	O8	HO8	98.6°	59.9°
C10	C7	C1	C6	147.6°	80.2°
C10	C7	C1	C2	34.8°	100.0°
O8	C7	C1	H7	122.4°	120.0°
O8	C7	C1	C6	94.2°	39.7°
O8	C7	C1	C2	83.4°	140.0°
C1	C7	O8	HO8	26.5°	60.1°
C7	C1	C6	C2	177.6°	179.7°
C7	C1	C2	C3	179.5°	180.0°
C7	C1	C2	H2	0.5°	0.0°
C7	C1	C6	C5	179.9°	179.9°
C7	C1	C6	H6	0.1°	0.0°
H7	C7	O8	HO8	141.6°	180.0°
H7	C7	C1	C6	28.2°	159.7°
H7	C7	C1	C2	154.2°	20.0°
C6	C1	C2	C3	1.9°	0.3°
C6	C1	C2	H2	178.1°	179.7°
C1	C6	C5	H6	180.0°	179.9°
C1	C6	C5	C4	1.7°	0.1°
C1	C6	C5	H5	178.3°	179.9°
C1	C2	C3	H2	180.0°	180.0°
C1	C2	C3	C4	0.5°	0.0°
C1	C2	C3	H3	179.4°	180.0°
C2	C1	C6	C5	2.5°	0.2°
C2	C1	C6	H6	177.5°	179.7°
C2	C3	C4	H3	180.0°	180.0°
C2	C3	C4	C5	0.3°	0.3°
C2	C3	C4	O1	179.9°	180.0°
H2	C2	C3	C4	179.5°	180.0°
H2	C2	C3	H3	0.6°	0.0°
C3	C4	C5	C6	0.3°	0.3°
C3	C4	C5	O1	179.8°	179.7°
C3	C4	C5	H5	179.7°	179.7°
C3	C4	O1	HO1	124.7°	90.3°
H3	C3	C4	C5	179.8°	179.7°
H3	C3	C4	O1	0.1°	0.0°
C6	C5	C4	H5	180.0°	180.0°
C6	C5	C4	O1	179.5°	180.0°
H6	C6	C5	C4	178.3°	180.0°
H6	C6	C5	H5	1.7°	0.0°
C5	C4	O1	HO1	55.5°	90.0°
H5	C5	C4	O1	0.5°	0.0°

218853

PDB entries from 2024-04-24

PDB statistics

PDBj update info

Contact PDBj

numon