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Summary Geometry Related PDB entries

HHA

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O1	C	sing	1.35Å	1.25Å
O1	HO1	sing	0.97Å	0.95Å
C	O2	doub	1.22Å	1.27Å
C	C1	sing	1.42Å	1.51Å
C1	C6	doub	1.35Å	1.44Å
C1	C2	sing	1.51Å	1.51Å
C6	C5	sing	1.46Å	1.39Å
C6	H6	sing	1.08Å	1.10Å
C5	C4	doub	1.33Å	1.41Å
C5	H5	sing	1.08Å	1.10Å
C4	C3	sing	1.51Å	1.53Å
C4	H4	sing	1.08Å	1.10Å
C3	O3'	sing	1.43Å	1.42Å
C3	C2	sing	1.53Å	1.50Å
C3	H3	sing	1.09Å	1.12Å
O3'	H3'	sing	0.97Å	0.95Å
C2	N2	sing	1.47Å	1.49Å
C2	H2	sing	1.09Å	1.11Å
N2	HN21	sing	1.01Å	1.02Å
N2	HN22	sing	1.01Å	1.02Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C	O1	HO1	120.7°	106.8°
O1	C	O2	120.7°	120.1°
O1	C	C1	118.8°	120.0°
O2	C	C1	120.3°	120.0°
C	C1	C6	119.8°	120.0°
C	C1	C2	118.5°	119.9°
C6	C1	C2	118.7°	120.1°
C1	C6	C5	120.5°	119.5°
C1	C6	H6	121.5°	120.3°
C1	C2	C3	112.9°	109.8°
C1	C2	N2	113.9°	109.4°
C1	C2	H2	105.4°	109.4°
C5	C6	H6	118.0°	120.2°
C6	C5	C4	121.9°	119.8°
C6	C5	H5	118.2°	120.1°
C4	C5	H5	119.9°	120.1°
C5	C4	C3	116.6°	120.4°
C5	C4	H4	117.9°	119.8°
C3	C4	H4	125.5°	119.8°
C4	C3	O3'	110.5°	109.3°
C4	C3	C2	110.7°	110.1°
C4	C3	H3	110.7°	109.4°
O3'	C3	C2	116.3°	109.4°
O3'	C3	H3	104.3°	109.4°
C3	O3'	H3'	110.5°	106.7°
C2	C3	H3	104.0°	109.4°
C3	C2	N2	114.2°	109.4°
C3	C2	H2	105.2°	109.4°
N2	C2	H2	104.0°	109.4°
C2	N2	HN21	110.6°	106.7°
C2	N2	HN22	113.9°	106.7°
HN21	N2	HN22	110.6°	106.7°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1	C	O2	C1	175.3°	179.9°
O1	C	C1	C6	171.0°	180.0°
O1	C	C1	C2	28.8°	0.1°
HO1	O1	C	O2	180.0°	0.0°
HO1	O1	C	C1	4.6°	179.9°
O2	C	C1	C6	4.3°	0.1°
O2	C	C1	C2	155.8°	180.0°
C	C1	C6	C2	160.1°	179.9°
C	C1	C6	C5	167.3°	179.8°
C	C1	C6	H6	12.7°	0.0°
C	C1	C2	C3	167.6°	145.2°
C	C1	C2	N2	35.2°	94.8°
C	C1	C2	H2	78.1°	25.1°
C1	C6	C5	H6	180.0°	179.9°
C1	C6	C5	C4	0.8°	19.2°
C1	C6	C5	H5	179.1°	160.8°
C6	C1	C2	C3	32.1°	34.9°
C6	C1	C2	N2	164.4°	85.1°
C6	C1	C2	H2	82.2°	155.0°
C2	C1	C6	C5	7.2°	0.3°
C2	C1	C6	H6	172.8°	179.9°
C1	C2	C3	C4	48.2°	49.9°
C1	C2	C3	O3'	175.4°	70.2°
C1	C2	C3	N2	132.2°	120.1°
C1	C2	C3	H2	114.5°	120.1°
C1	C2	C3	H3	70.7°	170.1°
C1	C2	N2	H2	114.2°	119.9°
C1	C2	N2	HN21	54.7°	59.9°
C1	C2	N2	HN22	180.0°	173.7°
C6	C5	C4	H5	180.0°	180.0°
C6	C5	C4	C3	19.8°	0.1°
C6	C5	C4	H4	160.3°	179.8°
H6	C6	C5	C4	179.2°	160.7°
H6	C6	C5	H5	0.9°	19.3°
C5	C4	C3	H4	180.0°	179.9°
C5	C4	C3	O3'	173.7°	85.1°
C5	C4	C3	C2	43.4°	35.1°
C5	C4	C3	H3	71.3°	155.2°
H5	C5	C4	C3	160.2°	179.9°
H5	C5	C4	H4	19.8°	0.2°
C4	C3	O3'	C2	127.3°	120.6°
C4	C3	O3'	H3	118.9°	119.7°
C4	C3	C2	H3	118.9°	120.2°
C4	C3	O3'	H3'	180.0°	59.5°
C4	C3	C2	N2	179.5°	70.2°
C4	C3	C2	H2	66.3°	170.0°
H4	C4	C3	O3'	6.3°	95.0°
H4	C4	C3	C2	136.6°	144.9°
H4	C4	C3	H3	108.7°	24.7°
O3'	C3	C2	H3	114.0°	119.7°
O3'	C3	C2	N2	52.4°	169.8°
O3'	C3	C2	H2	60.9°	49.9°
C2	C3	O3'	H3'	52.7°	180.0°
C3	C2	N2	H2	114.0°	119.8°
C3	C2	N2	HN21	173.5°	179.8°
C3	C2	N2	HN22	48.2°	66.0°
H3	C3	O3'	H3'	61.1°	60.2°
H3	C3	C2	N2	61.6°	50.0°
H3	C3	C2	H2	174.9°	69.8°
C2	N2	HN21	HN22	127.2°	113.8°
H2	C2	N2	HN21	59.5°	60.0°
H2	C2	N2	HN22	65.8°	53.8°

224572

PDB entries from 2024-09-04

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