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Summary Geometry Related PDB entries

HG3

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O1	C1	sing	1.43Å	1.43Å
C1	O1A	sing	1.43Å	1.43Å
C1	C2	sing	1.53Å	1.52Å
O	C2	sing	1.43Å	1.43Å
C2	C3	sing	1.53Å	1.53Å
C3	O4P	sing	1.43Å	1.43Å
O4P	P	sing	1.61Å	1.61Å
P	O2P	doub	1.48Å	1.51Å
P	O3P	sing	1.61Å	1.51Å
P	O1P	sing	1.61Å	1.51Å
O3P	H1	sing	0.97Å	0.95Å
O1P	H2	sing	0.97Å	0.95Å
C3	H3	sing	1.09Å	1.10Å
C3	H4	sing	1.09Å	1.10Å
C2	H5	sing	1.09Å	1.10Å
O	H6	sing	0.97Å	0.95Å
O1A	H7	sing	0.97Å	0.95Å
O1	H8	sing	0.97Å	0.95Å
C1	H9	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1	C1	O1A	110.1°	109.5°
O1	C1	C2	108.7°	109.4°
C1	O1	H8	109.5°	114.0°
O1	C1	H9	109.9°	109.5°
O1A	C1	C2	109.5°	109.5°
C1	O1A	H7	109.5°	114.0°
O1A	C1	H9	109.9°	109.4°
C1	C2	O	108.5°	109.5°
C1	C2	C3	111.8°	109.4°
C1	C2	H5	108.5°	109.4°
C2	C1	H9	108.7°	109.5°
O	C2	C3	109.7°	109.5°
O	C2	H5	109.8°	109.5°
C2	O	H6	109.5°	114.0°
C2	C3	O4P	108.7°	109.5°
C2	C3	H3	109.7°	109.4°
C2	C3	H4	109.7°	109.5°
C3	C2	H5	108.5°	109.5°
C3	O4P	P	122.4°	123.0°
O4P	C3	H3	109.7°	109.4°
O4P	C3	H4	109.7°	109.5°
O4P	P	O2P	108.7°	109.5°
O4P	P	O3P	109.1°	109.5°
O4P	P	O1P	109.5°	109.5°
O2P	P	O3P	110.0°	109.4°
O2P	P	O1P	109.6°	109.5°
O3P	P	O1P	109.9°	109.5°
P	O3P	H1	109.5°	114.0°
P	O1P	H2	109.5°	114.0°
H3	C3	H4	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1	C1	O1A	C2	119.5°	120.0°
O1	C1	O1A	H9	121.2°	120.0°
O1	C1	C2	H9	119.6°	120.1°
O1	C1	C2	O	67.8°	60.0°
O1	C1	C2	C3	171.1°	60.1°
O1	C1	C2	H5	51.4°	180.0°
O1	C1	O1A	H7	180.0°	60.0°
O1A	C1	C2	H9	120.1°	120.0°
O1A	C1	C2	O	171.9°	60.0°
O1A	C1	C2	C3	50.8°	180.0°
O1A	C1	C2	H5	68.9°	60.0°
O1A	C1	O1	H8	180.0°	60.0°
C1	C2	O	C3	122.4°	120.0°
C1	C2	O	H5	118.4°	120.0°
C1	C2	C3	H5	119.7°	119.9°
C1	C2	C3	O4P	164.4°	175.0°
C1	C2	C3	H3	44.5°	65.1°
C1	C2	C3	H4	75.7°	55.0°
C1	C2	O	H6	180.0°	60.0°
C2	C1	O1A	H7	60.6°	180.0°
C2	C1	O1	H8	60.1°	60.0°
O	C2	C3	H5	119.9°	120.0°
O	C2	C3	O4P	75.2°	64.9°
O	C2	C3	H3	164.9°	55.0°
O	C2	C3	H4	44.7°	175.1°
O	C2	C1	H9	51.8°	180.0°
C2	C3	O4P	H3	119.9°	119.9°
C2	C3	O4P	H4	119.9°	120.0°
C2	C3	O4P	P	168.9°	180.0°
C2	C3	H3	H4	120.3°	120.1°
C3	C2	O	H6	57.6°	60.0°
C3	C2	C1	H9	69.3°	60.0°
C3	O4P	P	O2P	68.4°	55.0°
C3	O4P	P	O3P	171.7°	174.9°
C3	O4P	P	O1P	51.3°	65.1°
O4P	C3	H3	H4	120.3°	120.0°
O4P	C3	C2	H5	44.7°	55.1°
O4P	P	O2P	O3P	119.3°	120.0°
O4P	P	O2P	O1P	119.7°	120.0°
O4P	P	O3P	O1P	120.1°	120.0°
O4P	P	O3P	H1	119.1°	180.0°
O4P	P	O1P	H2	119.1°	60.0°
P	O4P	C3	H3	71.2°	60.1°
P	O4P	C3	H4	49.0°	60.0°
O2P	P	O3P	O1P	120.8°	120.0°
O2P	P	O3P	H1	0.0°	60.0°
O2P	P	O1P	H2	0.0°	180.0°
O3P	P	O1P	H2	121.0°	60.0°
O1P	P	O3P	H1	120.8°	60.0°
H3	C3	C2	H5	75.2°	175.0°
H4	C3	C2	H5	164.6°	64.9°
H5	C2	O	H6	61.6°	179.9°
H5	C2	C1	H9	171.0°	60.0°
H7	O1A	C1	H9	58.8°	60.0°
H8	O1	C1	H9	58.8°	180.0°

223166

PDB entries from 2024-07-31

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