Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

HF4

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O3GPGdoub1.48Å1.46Å
O2GPGsing1.61Å1.53Å
PGO1Gsing1.61Å1.49Å
PGO3Bsing1.61Å1.70Å
O2BPBdoub1.48Å1.49Å
O3BPBsing1.61Å1.66Å
PBO3Asing1.61Å1.59Å
PBO1Bsing1.61Å1.48Å
O2'C2'sing1.43Å1.42Å
C3'O3'sing1.43Å1.44Å
C3'C2'sing1.55Å1.43Å
C3'C4'sing1.54Å1.51Å
O3APAsing1.61Å1.64Å
C5'C4'sing1.53Å1.52Å
C5'O5'sing1.43Å1.44Å
C2'C1'sing1.55Å1.50Å
C4'O4'sing1.44Å1.46Å
O5'PAsing1.61Å1.68Å
O2APAdoub1.48Å1.53Å
PAO1Asing1.61Å1.45Å
C1'O4'sing1.44Å1.49Å
C1'N1sing1.46Å1.43Å
C6N1sing1.36Å1.45Å
C6C5doub1.35Å1.44Å
N1C2sing1.35Å1.41Å
C5C4sing1.41Å1.44Å
C2O2doub1.22Å1.42Å
C2N3sing1.33Å1.45Å
C4N3doub1.33Å1.38Å
C4N4sing1.37Å1.43Å
C6H1sing1.08Å1.08Å
N4H2sing0.97Å1.00Å
N4H3sing0.97Å1.00Å
C5H4sing1.08Å1.08Å
O1GH5sing0.97Å0.95Å
O2GH6sing0.97Å0.95Å
O1BH7sing0.97Å0.95Å
O1AH8sing0.97Å0.95Å
C5'H9sing1.09Å1.10Å
C5'H10sing1.09Å1.10Å
C4'H11sing1.09Å1.10Å
C3'H12sing1.09Å1.10Å
O3'H13sing0.97Å0.95Å
C2'H14sing1.09Å1.10Å
O2'H15sing0.97Å0.95Å
C1'H16sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O3GPGO2G107.6°109.5°
O3GPGO1G105.2°109.5°
O3GPGO3B116.0°109.5°
O2GPGO1G110.1°109.5°
O2GPGO3B109.5°109.4°
PGO2GH6109.5°114.0°
O1GPGO3B108.3°109.5°
PGO1GH5109.5°114.0°
PGO3BPB120.6°134.0°
O2BPBO3B109.9°109.4°
O2BPBO3A100.7°109.5°
O2BPBO1B113.1°109.5°
O3BPBO3A105.2°109.5°
O3BPBO1B117.0°109.5°
O3APBO1B109.4°109.5°
PBO3APA120.1°134.0°
PBO1BH7109.5°114.1°
O2'C2'C3'106.2°110.9°
O2'C2'C1'112.9°110.9°
O2'C2'H14111.0°110.8°
C2'O2'H15109.5°114.0°
O3'C3'C2'106.0°110.5°
O3'C3'C4'113.8°110.5°
O3'C3'H12111.2°110.4°
C3'O3'H13109.5°114.0°
C2'C3'C4'104.1°104.2°
C3'C2'C1'105.9°102.1°
C2'C3'H12111.3°110.6°
C3'C2'H14110.8°110.9°
C3'C4'C5'114.0°109.9°
C3'C4'O4'108.2°107.3°
C3'C4'H11109.1°110.0°
C4'C3'H12110.2°110.5°
O3APAO5'111.1°109.5°
O3APAO2A102.8°109.5°
O3APAO1A111.2°109.4°
C4'C5'O5'113.5°109.5°
C5'C4'O4'106.8°109.9°
C4'C5'H9108.5°109.4°
C4'C5'H10108.5°109.5°
C5'C4'H11109.0°109.8°
C5'O5'PA121.9°122.9°
O5'C5'H9108.5°109.5°
O5'C5'H10108.4°109.5°
C2'C1'O4'107.9°103.5°
C2'C1'N1112.6°110.6°
C1'C2'H14109.8°110.9°
C2'C1'H16107.2°110.6°
C4'O4'C1'104.6°107.0°
O4'C4'H11109.7°109.9°
O5'PAO2A110.0°109.5°
O5'PAO1A111.1°109.5°
O2APAO1A110.3°109.5°
PAO1AH8109.5°114.0°
O4'C1'N1113.3°110.6°
O4'C1'H16107.4°110.6°
C1'N1C6124.1°119.8°
C1'N1C2116.3°119.9°
N1C1'H16108.1°110.7°
N1C6C5120.5°119.3°
C6N1C2119.6°120.3°
N1C6H1119.7°120.4°
C6C5C4118.0°119.0°
C5C6H1119.7°120.3°
C6C5H4121.0°120.6°
N1C2O2121.7°119.4°
N1C2N3119.6°121.1°
C5C4N3121.5°119.6°
C5C4N4124.6°120.2°
C4C5H4121.0°120.5°
O2C2N3118.5°119.4°
C2N3C4120.7°120.7°
N3C4N4113.9°120.2°
C4N4H2120.0°120.0°
C4N4H3120.0°120.0°
H2N4H3120.0°120.0°
H9C5'H10109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O3GPGO2GO1G114.2°120.0°
O3GPGO2GO3B126.8°120.0°
O3GPGO1GO3B124.6°120.0°
O3GPGO3BPB149.8°40.0°
O3GPGO1GH50.0°60.0°
O3GPGO2GH60.0°180.0°
O2GPGO1GO3B119.7°120.0°
O2GPGO3BPB27.9°80.0°
O2GPGO1GH5115.6°60.0°
O1GPGO3BPB92.2°160.0°
O1GPGO2GH6114.2°59.9°
PGO3BPBO2B29.9°40.0°
PGO3BPBO3A137.6°160.0°
PGO3BPBO1B100.9°80.0°
O3BPGO1GH5124.7°180.0°
O3BPGO2GH6126.8°60.1°
O2BPBO3BO3A107.6°120.0°
O2BPBO3BO1B130.8°120.0°
O2BPBO3AO1B119.3°120.0°
O2BPBO3APA172.6°45.0°
O2BPBO1BH70.0°180.0°
O3BPBO3AO1B126.4°120.0°
O3BPBO3APA73.1°165.0°
O3BPBO1BH7129.3°60.0°
PBO3APAO5'49.1°160.0°
PBO3APAO2A166.8°40.0°
PBO3APAO1A75.2°80.0°
O3APBO1BH7111.3°60.0°
O1BPBO3APA53.3°75.0°
O2'C2'C3'O3'149.3°143.9°
O2'C2'C3'C1'120.3°118.2°
O2'C2'C3'H14120.7°123.6°
O2'C2'C3'C4'90.4°97.3°
O2'C2'C1'H14124.4°123.6°
O2'C2'C1'O4'94.1°81.2°
O2'C2'C1'N131.7°37.3°
O2'C2'C3'H1228.3°21.4°
O2'C2'C1'H16150.5°160.3°
O3'C3'C2'C4'120.3°118.7°
O3'C3'C2'H12121.1°122.5°
O3'C3'C4'H12125.7°122.5°
O3'C3'C4'C5'155.1°119.9°
O3'C3'C2'C1'90.3°97.8°
O3'C3'C4'O4'86.2°120.7°
O3'C3'C4'H1133.1°1.2°
O3'C3'C2'H1428.7°20.3°
C2'C3'C4'H12119.4°118.8°
C2'C3'C4'C5'90.0°121.5°
C3'C2'C1'H14119.7°118.2°
C2'C3'C4'O4'28.7°2.0°
C3'C2'C1'O4'21.8°37.0°
C3'C2'C1'N1147.5°155.5°
C2'C3'C4'H11148.0°117.5°
C2'C3'O3'H13180.0°61.4°
C3'C2'O2'H15180.0°61.5°
C3'C2'C1'H1693.6°81.5°
C3'C4'C5'O4'119.5°117.8°
C3'C4'C5'H11122.1°121.2°
C3'C4'C5'O5'160.3°175.7°
C4'C3'C2'C1'30.0°20.9°
C3'C4'O4'H11118.9°119.6°
C3'C4'O4'C1'14.9°26.5°
C3'C4'C5'H979.1°64.3°
C3'C4'C5'H1039.8°55.7°
C4'C3'O3'H1366.3°176.2°
C4'C3'C2'H14149.0°139.1°
O3APAO5'C5'80.9°175.0°
O3APAO5'O2A113.2°120.0°
O3APAO5'O1A124.3°120.0°
O3APAO2AO1A118.6°120.0°
O3APAO1AH8113.4°60.0°
C4'C5'O5'H9120.6°119.9°
C4'C5'O5'H10120.6°120.0°
C5'C4'O4'H11117.9°121.0°
C4'C5'O5'PA83.9°180.0°
C5'C4'O4'C1'108.2°146.0°
C4'C5'H9H10118.2°120.0°
C5'C4'C3'H1229.5°2.6°
O5'C5'C4'O4'40.9°66.4°
C5'O5'PAO2A32.3°55.0°
C5'O5'PAO1A154.7°65.0°
O5'C5'H9H10118.1°120.1°
O5'C5'C4'H1177.6°54.6°
C2'C1'O4'C4'3.7°40.1°
C2'C1'O4'N1125.4°118.5°
C2'C1'O4'H16115.3°118.5°
C2'C1'N1H16118.3°123.0°
C2'C1'N1C684.2°115.0°
C2'C1'N1C297.6°65.0°
C1'C2'C3'H12148.6°139.6°
C1'C2'O2'H1564.3°174.2°
C4'O4'C1'N1129.0°158.6°
O4'C4'C5'H9161.5°53.5°
O4'C4'C5'H1079.7°173.5°
O4'C4'C3'H12148.1°116.8°
C4'O4'C1'H16111.7°78.4°
O5'PAO2AO1A122.9°120.1°
O5'PAO1AH8122.3°60.0°
PAO5'C5'H936.7°60.1°
PAO5'C5'H10155.5°60.0°
O2APAO1AH80.0°180.0°
O4'C1'N1H16118.9°123.0°
O4'C1'N1C638.6°130.9°
O4'C1'N1C2139.6°49.0°
C1'O4'C4'H11133.8°93.1°
O4'C1'C2'H14141.5°155.2°
C1'N1C6C2178.1°179.9°
C1'N1C6C5179.8°180.0°
C1'N1C2O24.0°0.1°
C1'N1C2N3179.3°180.0°
C1'N1C6H10.2°0.2°
N1C1'C2'H1492.8°86.3°
N1C6C5H1180.0°179.8°
N1C6C5C40.5°0.0°
C6N1C2O2177.8°180.0°
C6N1C2N32.4°0.1°
N1C6C5H4179.5°179.9°
C6N1C1'H16157.5°8.0°
C5C6N1C21.7°0.1°
C6C5C4H4180.0°180.0°
C6C5C4N32.1°0.1°
C6C5C4N4179.3°180.0°
N1C2O2N3175.4°179.9°
N1C2N3C40.9°0.1°
C2N1C6H1178.2°179.7°
C2N1C1'H1620.7°172.0°
C5C4N3C21.5°0.1°
C5C4N3N4177.4°179.9°
C4C5C6H1179.5°179.7°
C5C4N4H2177.4°0.0°
C5C4N4H32.6°180.0°
O2C2N3C4176.3°180.0°
C2N3C4N4178.9°180.0°
N3C4N4H20.0°179.9°
N3C4N4H3180.0°0.0°
N3C4C5H4177.8°179.9°
C4N4H2H3180.0°180.0°
N4C4C5H40.7°0.0°
H1C6C5H40.5°0.3°
H9C5'C4'H1143.0°174.5°
H10C5'C4'H11161.9°65.5°
H11C4'C3'H1292.6°123.7°
H12C3'O3'H1358.8°61.2°
H12C3'C2'H1492.4°102.2°
H14C2'O2'H1559.4°62.2°
H14C2'C1'H1626.0°36.7°

225158

PDB entries from 2024-09-18

PDB statisticsPDBj update infoContact PDBjnumon