HEE

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	C2	sing	1.53Å	1.51Å
C1	P	sing	1.82Å	1.61Å
C1	H11	sing	1.09Å	1.11Å
C1	H12	sing	1.09Å	1.11Å
C2	C3	sing	1.53Å	1.51Å
C2	H21	sing	1.09Å	1.12Å
C2	H22	sing	1.09Å	1.11Å
C3	C4	sing	1.53Å	1.51Å
C3	H31	sing	1.09Å	1.11Å
C3	H32	sing	1.09Å	1.12Å
C4	C5	sing	1.53Å	1.52Å
C4	H41	sing	1.09Å	1.12Å
C4	H42	sing	1.09Å	1.11Å
C5	C6	sing	1.53Å	1.50Å
C5	H51	sing	1.09Å	1.11Å
C5	H52	sing	1.09Å	1.11Å
C6	H61	sing	1.09Å	1.11Å
C6	H62	sing	1.09Å	1.12Å
C6	H63	sing	1.09Å	1.12Å
P	O1P	doub	1.48Å	1.60Å
P	O2P	sing	1.61Å	1.62Å
P	O3P	sing	1.61Å	1.61Å
O2P	C1'	sing	1.43Å	1.44Å
O3P	HOP3	sing	0.97Å	0.95Å
C1'	C2'	sing	1.53Å	1.51Å
C1'	H1'1	sing	1.09Å	1.12Å
C1'	H1'2	sing	1.09Å	1.12Å
C2'	H2'1	sing	1.09Å	1.11Å
C2'	H2'2	sing	1.09Å	1.12Å
C2'	H2'3	sing	1.09Å	1.11Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C2	C1	P	120.3°	109.5°
C2	C1	H11	108.3°	109.5°
C2	C1	H12	108.3°	109.4°
C1	C2	C3	110.8°	109.5°
C1	C2	H21	111.8°	109.5°
C1	C2	H22	111.7°	109.4°
P	C1	H11	108.3°	109.5°
P	C1	H12	108.3°	109.4°
C1	P	O1P	107.3°	109.4°
C1	P	O2P	106.0°	109.5°
C1	P	O3P	109.5°	109.5°
H11	C1	H12	101.7°	109.5°
C3	C2	H21	111.7°	109.5°
C3	C2	H22	111.7°	109.4°
C2	C3	C4	111.4°	109.5°
C2	C3	H31	111.5°	109.5°
C2	C3	H32	111.5°	109.4°
H21	C2	H22	98.6°	109.5°
C4	C3	H31	111.5°	109.5°
C4	C3	H32	111.5°	109.4°
C3	C4	C5	111.5°	109.5°
C3	C4	H41	111.5°	109.5°
C3	C4	H42	111.4°	109.4°
H31	C3	H32	98.9°	109.5°
C5	C4	H41	111.5°	109.5°
C5	C4	H42	111.5°	109.4°
C4	C5	C6	110.3°	109.5°
C4	C5	H51	111.9°	109.5°
C4	C5	H52	111.9°	109.4°
H41	C4	H42	98.8°	109.5°
C6	C5	H51	111.9°	109.5°
C6	C5	H52	111.9°	109.4°
C5	C6	H61	110.3°	109.5°
C5	C6	H62	112.0°	109.4°
C5	C6	H63	111.9°	109.5°
H51	C5	H52	98.5°	109.5°
H61	C6	H62	111.9°	109.4°
H61	C6	H63	111.9°	109.5°
H62	C6	H63	98.4°	109.5°
O1P	P	O2P	113.7°	109.5°
O1P	P	O3P	107.6°	109.4°
O2P	P	O3P	112.6°	109.5°
P	O2P	C1'	123.1°	106.9°
P	O3P	HOP3	109.5°	106.7°
O2P	C1'	C2'	109.7°	109.5°
O2P	C1'	H1'1	112.1°	109.5°
O2P	C1'	H1'2	112.1°	109.4°
C2'	C1'	H1'1	112.2°	109.5°
C2'	C1'	H1'2	112.1°	109.4°
C1'	C2'	H2'1	109.7°	109.5°
C1'	C2'	H2'2	112.1°	109.6°
C1'	C2'	H2'3	112.1°	109.4°
H1'1	C1'	H1'2	98.3°	109.4°
H2'1	C2'	H2'2	112.2°	109.5°
H2'1	C2'	H2'3	112.2°	109.4°
H2'2	C2'	H2'3	98.3°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C2	C1	P	H11	125.2°	120.1°
C2	C1	P	H12	125.3°	120.0°
C2	C1	H11	H12	114.0°	120.0°
C1	C2	C3	H21	125.3°	120.1°
C1	C2	C3	H22	125.3°	120.0°
C1	C2	H21	H22	117.6°	120.0°
C1	C2	C3	C4	136.6°	180.0°
C1	C2	C3	H31	11.3°	59.9°
C1	C2	C3	H32	98.2°	60.0°
C2	C1	P	O1P	76.2°	60.0°
C2	C1	P	O2P	162.0°	180.0°
C2	C1	P	O3P	40.3°	59.9°
P	C1	H11	H12	114.0°	120.0°
P	C1	C2	C3	75.3°	180.0°
P	C1	C2	H21	49.9°	59.9°
P	C1	C2	H22	159.4°	60.0°
C1	P	O1P	O2P	116.9°	120.0°
C1	P	O1P	O3P	117.7°	120.0°
C1	P	O2P	O3P	119.7°	120.1°
C1	P	O2P	C1'	33.4°	180.0°
C1	P	O3P	HOP3	180.0°	60.0°
H11	C1	C2	C3	49.9°	59.9°
H11	C1	C2	H21	175.2°	180.0°
H11	C1	C2	H22	75.4°	60.0°
H11	C1	P	O1P	49.0°	60.0°
H11	C1	P	O2P	72.8°	60.0°
H11	C1	P	O3P	165.5°	180.0°
H12	C1	C2	C3	159.4°	60.1°
H12	C1	C2	H21	75.3°	60.0°
H12	C1	C2	H22	34.1°	180.0°
H12	C1	P	O1P	158.5°	180.0°
H12	C1	P	O2P	36.8°	60.0°
H12	C1	P	O3P	85.0°	60.0°
C3	C2	H21	H22	117.6°	119.9°
C2	C3	C4	H31	125.3°	120.1°
C2	C3	C4	H32	125.2°	119.9°
C2	C3	H31	H32	117.4°	119.9°
C2	C3	C4	C5	83.3°	180.0°
C2	C3	C4	H41	151.5°	59.9°
C2	C3	C4	H42	42.1°	60.1°
H21	C2	C3	C4	98.1°	59.9°
H21	C2	C3	H31	136.6°	180.0°
H21	C2	C3	H32	27.1°	60.0°
H22	C2	C3	C4	11.3°	60.0°
H22	C2	C3	H31	114.0°	60.0°
H22	C2	C3	H32	136.5°	180.0°
C4	C3	H31	H32	117.4°	120.0°
C3	C4	C5	H41	125.3°	120.1°
C3	C4	C5	H42	125.3°	120.0°
C3	C4	H41	H42	117.3°	120.0°
C3	C4	C5	C6	122.2°	180.0°
C3	C4	C5	H51	112.5°	59.9°
C3	C4	C5	H52	3.0°	60.0°
H31	C3	C4	C5	42.1°	59.9°
H31	C3	C4	H41	83.2°	180.0°
H31	C3	C4	H42	167.4°	60.0°
H32	C3	C4	C5	151.5°	60.1°
H32	C3	C4	H41	26.2°	60.0°
H32	C3	C4	H42	83.2°	180.0°
C5	C4	H41	H42	117.4°	119.9°
C4	C5	C6	H51	125.2°	120.1°
C4	C5	C6	H52	125.2°	119.9°
C4	C5	H51	H52	117.8°	119.9°
C4	C5	C6	H61	180.0°	180.0°
C4	C5	C6	H62	54.7°	60.1°
C4	C5	C6	H63	54.7°	59.9°
H41	C4	C5	C6	3.1°	59.9°
H41	C4	C5	H51	122.2°	180.0°
H41	C4	C5	H52	128.3°	60.0°
H42	C4	C5	C6	112.5°	60.0°
H42	C4	C5	H51	12.8°	60.0°
H42	C4	C5	H52	122.3°	180.0°
C6	C5	H51	H52	117.9°	120.0°
C5	C6	H61	H62	125.3°	119.9°
C5	C6	H61	H63	125.3°	120.1°
C5	C6	H62	H63	117.8°	120.0°
H51	C5	C6	H61	54.8°	59.9°
H51	C5	C6	H62	179.9°	60.0°
H51	C5	C6	H63	70.5°	NaN°
H52	C5	C6	H61	54.8°	60.1°
H52	C5	C6	H62	70.5°	180.0°
H52	C5	C6	H63	180.0°	60.0°
H61	C6	H62	H63	117.8°	120.0°
O1P	P	O2P	O3P	122.7°	120.0°
O1P	P	O2P	C1'	151.0°	60.0°
O1P	P	O3P	HOP3	63.7°	180.0°
O2P	P	O3P	HOP3	62.3°	60.1°
P	O2P	C1'	C2'	152.5°	179.9°
P	O2P	C1'	H1'1	27.2°	59.9°
P	O2P	C1'	H1'2	82.2°	60.0°
O3P	P	O2P	C1'	86.3°	59.9°
O2P	C1'	C2'	H1'1	125.3°	120.1°
O2P	C1'	C2'	H1'2	125.3°	119.9°
O2P	C1'	H1'1	H1'2	118.0°	120.0°
O2P	C1'	C2'	H2'1	180.0°	179.9°
O2P	C1'	C2'	H2'2	54.7°	59.9°
O2P	C1'	C2'	H2'3	54.7°	60.1°
C2'	C1'	H1'1	H1'2	118.1°	119.9°
C1'	C2'	H2'1	H2'2	125.2°	120.2°
C1'	C2'	H2'1	H2'3	125.2°	119.9°
C1'	C2'	H2'2	H2'3	118.0°	119.9°
H1'1	C1'	C2'	H2'1	54.7°	59.8°
H1'1	C1'	C2'	H2'2	180.0°	180.0°
H1'1	C1'	C2'	H2'3	70.6°	60.1°
H1'2	C1'	C2'	H2'1	54.7°	60.1°
H1'2	C1'	C2'	H2'2	70.5°	60.0°
H1'2	C1'	C2'	H2'3	180.0°	180.0°
H2'1	C2'	H2'2	H2'3	118.1°	119.9°

Definition date:	1999-07-08
Last modified:	2024-09-27
Release status:	REL
Processing site:	RCSB
Derived from:	1XZL