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HE5

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O1ACGAdoub1.21Å1.22Å
CGAO2Asing1.35Å1.47Å
CGACBAsing1.50Å1.52Å
O2AC40sing1.45Å1.43Å
C40H401sing0.97Å1.10Å
C40H402sing0.97Å1.10Å
C40H403sing0.97Å1.10Å
CBACAAsing1.53Å1.54Å
CBAHBA1sing0.99Å1.10Å
CBAHBA2sing0.98Å1.10Å
CAAC2Asing1.51Å1.52Å
CAAHAA1sing0.98Å1.10Å
CAAHAA2sing0.98Å1.10Å
C2AC1Asing1.38Å1.40Å
C2AC3Adoub1.37Å1.40Å
C1ACHAsing1.41Å1.47Å
C1ANAdoub1.36Å1.33Å
CHAC4Ddoub1.41Å1.48Å
CHAHHAsing0.95Å1.08Å
C3AC4Asing1.37Å1.38Å
C3ACMAsing1.51Å1.51Å
CMAHMA1sing0.97Å1.10Å
CMAHMA2sing0.97Å1.10Å
CMAHMA3sing0.97Å1.10Å
C4ANAsing1.36Å1.34Å
C4ACHBdoub1.41Å1.47Å
NAZNsing2.12Å2.17Å
CHBC1Bsing1.43Å1.46Å
CHBHHBsing0.95Å1.08Å
C1BNBsing1.36Å1.33ÅAromatic
C1BC2Bdoub1.38Å1.39ÅAromatic
C2BC3Bsing1.36Å1.39ÅAromatic
C2BH2B1sing0.95Å1.08Å
C3BC4Bdoub1.38Å1.40ÅAromatic
C3BCABsing1.50Å1.51Å
CABHAB1sing0.97Å1.10Å
CABHAB2sing0.97Å1.10Å
CABHAB3sing0.97Å1.10Å
NBZNsing2.10Å2.16Å
NBC4Bsing1.36Å1.33ÅAromatic
ZNNDsing2.11Å2.16Å
ZNNCsing2.09Å2.16Å
NDC1Dsing1.36Å1.34Å
NDC4Dsing1.36Å1.33Å
C4DC3Dsing1.38Å1.39Å
C4BCHCsing1.40Å1.48Å
CHCC1Cdoub1.43Å1.48Å
CHCHHCsing0.95Å1.08Å
C1CC2Csing1.38Å1.39Å
C1CNCsing1.36Å1.34Å
C2CC3Cdoub1.36Å1.40Å
C2CH2Csing0.95Å1.08Å
C3CCACsing1.50Å1.51Å
C3CC4Csing1.39Å1.39Å
CACHAC1sing0.97Å1.10Å
CACHAC2sing0.97Å1.10Å
CACHAC3sing0.97Å1.10Å
NCC4Cdoub1.36Å1.33Å
C4CCHDsing1.40Å1.48Å
CHDC1Ddoub1.41Å1.48Å
CHDHHDsing0.95Å1.08Å
C1DC2Dsing1.38Å1.40Å
C2DCMDsing1.51Å1.51Å
C2DC3Ddoub1.37Å1.40Å
CMDHMD1sing0.97Å1.10Å
CMDHMD2sing0.97Å1.10Å
CMDHMD3sing0.97Å1.10Å
C3DCADsing1.51Å1.51Å
CADCBDsing1.53Å1.52Å
CADHAD1sing0.98Å1.10Å
CADHAD2sing0.98Å1.10Å
CBDCGDsing1.50Å1.51Å
CBDHBD1sing0.98Å1.10Å
CBDHBD2sing0.99Å1.10Å
CGDO1Ddoub1.21Å1.23Å
CGDO2Dsing1.35Å1.45Å
O2DC41sing1.45Å1.44Å
C41H411sing0.97Å1.10Å
C41H412sing0.97Å1.10Å
C41H413sing0.97Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1ACGAO2A118.7°124.3°
O1ACGACBA119.3°124.7°
O2ACGACBA122.0°111.0°
CGAO2AC40120.7°119.7°
CGACBACAA113.2°113.8°
CGACBAHBA1108.5°109.1°
CGACBAHBA2108.5°108.9°
O2AC40H401109.5°109.5°
O2AC40H402109.4°109.5°
O2AC40H403109.5°109.4°
H401C40H402109.5°109.5°
H401C40H403109.5°109.5°
H402C40H403109.5°109.5°
CAACBAHBA1108.6°108.7°
CAACBAHBA2108.5°108.7°
CBACAAC2A113.3°113.8°
CBACAAHAA1108.5°108.5°
CBACAAHAA2108.5°108.8°
HBA1CBAHBA2109.5°107.4°
C2ACAAHAA1108.5°109.4°
C2ACAAHAA2108.5°110.0°
CAAC2AC1A126.5°126.1°
CAAC2AC3A128.1°126.5°
HAA1CAAHAA2109.5°106.1°
C1AC2AC3A105.4°107.4°
C2AC1ACHA125.6°127.6°
C2AC1ANA110.8°108.8°
C2AC3AC4A105.6°107.4°
C2AC3ACMA128.7°125.5°
CHAC1ANA123.6°123.6°
C1ACHAC4D128.0°131.0°
C1ACHAHHA116.0°114.4°
C1ANAC4A106.9°107.4°
C1ANAZN126.8°125.1°
C4DCHAHHA116.0°114.5°
CHAC4DND125.0°123.6°
CHAC4DC3D124.9°127.5°
C4AC3ACMA125.7°127.1°
C3AC4ANA111.3°109.0°
C3AC4ACHB123.5°128.5°
C3ACMAHMA1109.5°110.3°
C3ACMAHMA2109.4°110.0°
C3ACMAHMA3109.5°109.5°
HMA1CMAHMA2109.5°108.5°
HMA1CMAHMA3109.5°109.3°
HMA2CMAHMA3109.5°109.3°
NAC4ACHB125.2°122.5°
C4ANAZN126.3°127.2°
C4ACHBC1B126.7°129.2°
C4ACHBHHB116.7°117.7°
NAZNNB89.3°89.5°
NAZNND89.9°90.2°
NAZNNC170.2°166.6°
C1BCHBHHB116.6°113.1°
CHBC1BNB126.1°125.5°
CHBC1BC2B119.5°124.6°
NBC1BC2B114.4°109.8°
C1BNBZN125.9°124.8°
C1BNBC4B106.3°106.7°
C1BC2BC3B101.2°106.8°
C1BC2BH2B1129.4°127.4°
C3BC2BH2B1129.4°125.7°
C2BC3BC4B109.6°107.7°
C2BC3BCAB115.2°123.5°
C4BC3BCAB135.2°128.9°
C3BC4BNB108.4°109.0°
C3BC4BCHC127.7°127.8°
C3BCABHAB1109.5°109.6°
C3BCABHAB2109.5°109.5°
C3BCABHAB3109.5°109.5°
HAB1CABHAB2109.4°109.3°
HAB1CABHAB3109.5°109.5°
HAB2CABHAB3109.5°109.4°
ZNNBC4B127.7°128.1°
NBZNND170.3°166.4°
NBZNNC89.2°88.5°
NBC4BCHC123.9°123.1°
NDZNNC89.9°88.7°
ZNNDC1D126.4°126.8°
ZNNDC4D125.6°125.3°
ZNNCC1C125.6°126.0°
ZNNCC4C126.7°126.9°
C1DNDC4D108.0°107.5°
NDC1DCHD124.5°122.9°
NDC1DC2D110.1°108.9°
NDC4DC3D110.1°108.9°
C4DC3DC2D106.2°107.3°
C4DC3DCAD127.2°126.1°
C4BCHCC1C126.2°127.7°
C4BCHCHHC116.9°117.7°
C1CCHCHHC116.9°114.6°
CHCC1CC2C120.9°124.7°
CHCC1CNC126.3°125.5°
C2CC1CNC112.7°109.8°
C1CC2CC3C102.2°106.7°
C1CC2CH2C128.9°127.5°
C1CNCC4C107.7°106.7°
C3CC2CH2C128.9°125.8°
C2CC3CCAC116.3°123.1°
C2CC3CC4C109.3°107.8°
CACC3CC4C134.4°129.1°
C3CCACHAC1109.5°109.6°
C3CCACHAC2109.5°109.5°
C3CCACHAC3109.5°109.5°
C3CC4CNC108.1°108.9°
C3CC4CCHD127.4°127.4°
HAC1CACHAC2109.4°109.4°
HAC1CACHAC3109.5°109.4°
HAC2CACHAC3109.5°109.5°
NCC4CCHD124.5°123.6°
C4CCHDC1D127.5°129.9°
C4CCHDHHD116.3°114.3°
C1DCHDHHD116.3°115.8°
CHDC1DC2D125.4°128.2°
C1DC2DCMD128.0°127.2°
C1DC2DC3D105.6°107.4°
CMDC2DC3D126.4°125.4°
C2DCMDHMD1109.5°110.0°
C2DCMDHMD2109.5°110.3°
C2DCMDHMD3109.5°109.5°
C2DC3DCAD126.6°126.5°
HMD1CMDHMD2109.4°108.5°
HMD1CMDHMD3109.5°109.3°
HMD2CMDHMD3109.5°109.2°
C3DCADCBD107.7°113.7°
C3DCADHAD1109.9°109.4°
C3DCADHAD2109.9°110.0°
CBDCADHAD1109.9°108.6°
CBDCADHAD2109.9°108.8°
CADCBDCGD112.0°113.8°
CADCBDHBD1108.8°108.7°
CADCBDHBD2108.8°108.6°
HAD1CADHAD2109.4°106.1°
CGDCBDHBD1108.9°109.2°
CGDCBDHBD2108.8°108.9°
CBDCGDO1D122.1°124.7°
CBDCGDO2D118.5°111.1°
HBD1CBDHBD2109.4°107.4°
O1DCGDO2D119.4°124.2°
CGDO2DC41119.7°119.7°
O2DC41H411109.5°109.4°
O2DC41H412109.5°109.4°
O2DC41H413109.5°109.3°
H411C41H412109.5°109.6°
H411C41H413109.4°109.5°
H412C41H413109.5°109.6°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1ACGAO2ACBA179.8°180.0°
O1ACGAO2AC40105.4°0.2°
O1ACGACBACAA42.0°93.4°
O1ACGACBAHBA178.5°145.0°
O1ACGACBAHBA2162.6°28.0°
CGAO2AC40H401180.0°58.8°
CGAO2AC40H40260.0°178.9°
CGAO2AC40H40360.0°61.2°
O2ACGACBACAA137.8°86.5°
O2ACGACBAHBA1101.7°35.1°
O2ACGACBAHBA217.2°152.0°
CBACGAO2AC4074.8°179.8°
CGACBACAAHBA1120.5°121.8°
CGACBACAAHBA2120.6°121.5°
CGACBAHBA1HBA2118.3°117.9°
CGACBACAAC2A53.6°175.6°
CGACBACAAHAA166.9°53.5°
CGACBACAAHAA2174.2°61.4°
O2AC40H401H402120.0°120.0°
O2AC40H401H403120.0°119.9°
O2AC40H402H403120.0°119.9°
H401C40H402H403120.0°120.1°
CAACBAHBA1HBA2118.3°117.5°
CBACAAC2AHAA1120.6°121.6°
CBACAAC2AHAA2120.6°122.3°
CBACAAHAA1HAA2118.3°116.7°
CBACAAC2AC1A138.8°86.4°
CBACAAC2AC3A41.8°93.1°
HBA1CBACAAC2A174.1°62.6°
HBA1CBACAAHAA153.6°175.4°
HBA1CBACAAHAA265.3°60.4°
HBA2CBACAAC2A66.9°54.0°
HBA2CBACAAHAA1172.5°68.0°
HBA2CBACAAHAA253.6°177.0°
C2ACAAHAA1HAA2118.3°118.6°
CAAC2AC1AC3A179.5°179.6°
CAAC2AC1ACHA0.3°0.0°
CAAC2AC1ANA179.5°179.4°
CAAC2AC3AC4A179.9°179.7°
CAAC2AC3ACMA0.3°0.3°
HAA1CAAC2AC1A18.2°35.2°
HAA1CAAC2AC3A162.4°145.3°
HAA2CAAC2AC1A100.6°151.3°
HAA2CAAC2AC3A78.8°29.2°
C2AC1ACHANA179.1°179.3°
C2AC1ACHAC4D170.1°178.3°
C2AC1ACHAHHA9.9°3.3°
C1AC2AC3AC4A0.6°0.1°
C1AC2AC3ACMA179.8°179.9°
C2AC1ANAC4A0.9°0.4°
C2AC1ANAZN179.4°173.2°
C3AC2AC1ACHA179.8°179.6°
C3AC2AC1ANA1.0°0.2°
C2AC3AC4ACMA179.6°179.9°
C2AC3ACMAHMA1180.0°164.1°
C2AC3ACMAHMA260.0°44.4°
C2AC3ACMAHMA360.0°75.7°
C2AC3AC4ANA0.1°0.4°
C2AC3AC4ACHB179.4°179.9°
C1ACHAC4DHHA180.0°178.5°
CHAC1ANAC4A179.8°179.8°
CHAC1ANAZN0.1°6.2°
C1ACHAC4DND12.1°2.0°
C1ACHAC4DC3D170.8°177.7°
NAC1ACHAC4D10.8°2.4°
NAC1ACHAHHA169.2°176.0°
C1ANAC4AC3A0.5°0.5°
C1ANAC4AZN179.7°173.4°
C1ANAC4ACHB180.0°179.9°
C1ANAZNNB176.3°176.8°
C1ANAZNND6.0°10.4°
C1ANAZNNC94.8°95.4°
CHAC4DNDZN2.2°7.0°
CHAC4DNDC1D179.5°180.0°
CHAC4DNDC3D177.5°179.7°
CHAC4DC3DC2D178.5°179.9°
CHAC4DC3DCAD2.3°0.8°
HHACHAC4DND167.9°176.5°
HHACHAC4DC3D9.2°3.9°
C4AC3ACMAHMA10.5°15.9°
C4AC3ACMAHMA2120.5°135.5°
C4AC3ACMAHMA3119.5°104.4°
C3AC4ANACHB179.5°179.6°
C3AC4ANAZN179.8°172.9°
C3AC4ACHBC1B173.8°178.6°
C3AC4ACHBHHB6.1°1.9°
C3ACMAHMA1HMA2120.0°120.5°
C3ACMAHMA1HMA3120.0°120.4°
C3ACMAHMA2HMA3120.0°120.2°
CMAC3AC4ANA179.7°179.7°
CMAC3AC4ACHB0.1°0.1°
HMA1CMAHMA2HMA3120.0°119.1°
NAC4ACHBC1B6.7°1.9°
NAC4ACHBHHB173.3°177.6°
C4ANAZNNB3.4°10.8°
C4ANAZNND173.7°177.3°
C4ANAZNNC84.9°92.3°
CHBC4ANAZN0.3°6.7°
C4ACHBC1BHHB180.0°179.5°
C4ACHBC1BNB7.7°1.4°
C4ACHBC1BC2B174.3°178.6°
NAZNNBC1B2.6°10.9°
NAZNNBND85.7°88.7°
NAZNNBNC170.3°166.7°
NAZNNBC4B175.1°177.9°
NAZNNDNC170.2°166.6°
NAZNNDC1D173.1°177.6°
NAZNNDC4D4.9°10.8°
NAZNNCC1C85.8°92.1°
NAZNNCC4C91.9°95.9°
CHBC1BNBC2B178.1°180.0°
CHBC1BC2BC3B179.0°179.8°
CHBC1BC2BH2B10.9°0.0°
CHBC1BNBZN2.0°7.5°
CHBC1BNBC4B179.9°179.7°
HHBCHBC1BNB172.3°178.1°
HHBCHBC1BC2B5.7°1.9°
NBC1BC2BC3B0.8°0.2°
NBC1BC2BH2B1179.2°180.0°
C1BNBC4BC3B2.1°0.3°
C1BNBZNC4B177.7°171.2°
C1BNBZNND88.3°99.7°
C1BNBZNNC172.9°177.6°
C1BNBC4BCHC179.6°180.0°
C1BC2BC3BH2B1180.0°179.9°
C1BC2BC3BC4B0.5°0.0°
C1BC2BC3BCAB179.0°179.9°
C2BC1BNBZN179.9°172.5°
C2BC1BNBC4B1.8°0.3°
C2BC3BC4BCAB178.1°179.9°
C2BC3BCABHAB190.7°142.9°
C2BC3BCABHAB2149.4°23.0°
C2BC3BCABHAB329.4°97.0°
C2BC3BC4BNB1.7°0.2°
C2BC3BC4BCHC179.9°179.9°
H2B1C2BC3BC4B179.5°179.9°
H2B1C2BC3BCAB1.0°0.2°
C4BC3BCABHAB191.4°37.2°
C4BC3BCABHAB228.6°157.1°
C4BC3BCABHAB3148.6°82.9°
C3BC4BNBZN179.9°172.2°
C3BC4BNBCHC178.4°179.7°
C3BC4BCHCC1C170.6°179.0°
C3BC4BCHCHHC9.4°1.2°
C3BCABHAB1HAB2120.0°120.0°
C3BCABHAB1HAB3120.0°120.1°
C3BCABHAB2HAB3120.0°120.1°
CABC3BC4BNB179.7°179.8°
CABC3BC4BCHC2.0°0.0°
HAB1CABHAB2HAB3120.0°119.8°
NBZNNDNC84.5°78.0°
NBZNNDC1D87.4°89.0°
NBZNNDC4D90.6°99.4°
ZNNBC4BCHC1.6°7.6°
NBZNNCC1C4.3°10.5°
NBZNNCC4C173.5°177.5°
C4BNBZNND89.4°89.2°
C4BNBZNNC4.8°11.2°
NBC4BCHCC1C11.3°1.3°
NBC4BCHCHHC168.6°178.5°
ZNNDC1DC4D178.2°172.8°
ZNNDC4DC3D179.7°173.2°
NDZNNCC1C174.6°177.3°
NDZNNCC4C3.2°10.8°
ZNNDC1DCHD2.1°7.2°
ZNNDC1DC2D179.5°173.1°
NCZNNDC1D2.9°11.0°
NCZNNDC4D175.1°177.4°
ZNNCC1CCHC2.6°6.8°
ZNNCC1CC2C179.9°172.7°
ZNNCC1CC4C178.1°173.3°
ZNNCC4CC3C179.9°172.7°
ZNNCC4CCHD1.6°6.8°
C1DNDC4DC3D2.0°0.3°
NDC1DCHDC4C9.2°1.8°
NDC1DCHDC2D176.9°179.7°
NDC1DCHDHHD170.9°177.3°
NDC1DC2DCMD179.3°179.6°
NDC1DC2DC3D1.6°0.1°
C4DNDC1DCHD179.6°180.0°
C4DNDC1DC2D2.3°0.3°
NDC4DC3DC2D1.0°0.2°
NDC4DC3DCAD179.8°179.5°
C4DC3DC2DC1D0.4°0.0°
C4DC3DC2DCMD179.5°179.4°
C4DC3DC2DCAD179.2°179.3°
C4DC3DCADCBD76.5°86.6°
C4DC3DCADHAD1163.8°35.0°
C4DC3DCADHAD243.3°151.2°
C4BCHCC1CHHC180.0°179.8°
C4BCHCC1CC2C170.8°178.9°
C4BCHCC1CNC12.1°1.6°
CHCC1CC2CNC177.5°179.5°
CHCC1CC2CC3C178.8°179.9°
CHCC1CC2CH2C1.3°0.4°
CHCC1CNCC4C179.3°179.9°
HHCCHCC1CC2C9.2°1.3°
HHCCHCC1CNC167.9°178.2°
C1CC2CC3CH2C180.0°179.7°
C1CC2CC3CCAC179.0°179.9°
C1CC2CC3CC4C0.1°0.1°
C2CC1CNCC4C2.0°0.6°
NCC1CC2CC3C1.3°0.4°
NCC1CC2CH2C178.8°179.9°
C1CNCC4CC3C1.8°0.6°
C1CNCC4CCHD179.6°180.0°
C2CC3CCACC4C178.8°179.9°
C2CC3CCACHAC1180.0°143.0°
C2CC3CCACHAC260.0°23.0°
C2CC3CCACHAC360.0°97.0°
C2CC3CC4CNC1.1°0.3°
C2CC3CC4CCHD179.6°179.7°
H2CC2CC3CCAC1.0°0.2°
H2CC2CC3CC4C179.9°179.7°
C3CCACHAC1HAC2120.0°120.1°
C3CCACHAC1HAC3120.0°120.0°
C3CCACHAC2HAC3120.0°120.0°
CACC3CC4CNC179.9°179.8°
CACC3CC4CCHD1.6°0.4°
C4CC3CCACHAC11.2°36.9°
C4CC3CCACHAC2118.8°156.9°
C4CC3CCACHAC3121.2°83.1°
C3CC4CNCCHD178.5°179.4°
C3CC4CCHDC1D172.9°178.6°
C3CC4CCHDHHD7.1°2.3°
HAC1CACHAC2HAC3120.0°119.9°
NCC4CCHDC1D8.9°2.1°
NCC4CCHDHHD171.2°177.0°
C4CCHDC1DHHD180.0°179.1°
C4CCHDC1DC2D173.9°177.8°
CHDC1DC2DCMD1.9°0.7°
CHDC1DC2DC3D178.9°179.8°
HHDCHDC1DC2D6.1°3.0°
C1DC2DCMDC3D178.9°179.4°
C1DC2DCMDHMD1180.0°137.3°
C1DC2DCMDHMD260.0°17.6°
C1DC2DCMDHMD360.0°102.6°
C1DC2DC3DCAD178.8°179.3°
C2DCMDHMD1HMD2120.0°120.8°
C2DCMDHMD1HMD3120.0°120.2°
C2DCMDHMD2HMD3120.0°120.4°
CMDC2DC3DCAD0.3°0.1°
C3DC2DCMDHMD11.0°43.3°
C3DC2DCMDHMD2118.9°163.0°
C3DC2DCMDHMD3121.1°76.8°
C2DC3DCADCBD102.6°92.6°
C2DC3DCADHAD117.2°145.8°
C2DC3DCADHAD2137.7°29.7°
HMD1CMDHMD2HMD3120.0°119.0°
C3DCADCBDHAD1119.7°122.0°
C3DCADCBDHAD2119.7°123.0°
C3DCADHAD1HAD2120.8°118.6°
C3DCADCBDCGD114.6°170.2°
C3DCADCBDHBD1125.0°67.9°
C3DCADCBDHBD25.8°48.7°
CBDCADHAD1HAD2120.8°116.8°
CADCBDCGDHBD1120.4°121.7°
CADCBDCGDHBD2120.4°121.3°
CADCBDHBD1HBD2118.8°117.4°
CADCBDCGDO1D60.3°88.5°
CADCBDCGDO2D121.7°91.4°
HAD1CADCBDCGD5.1°48.2°
HAD1CADCBDHBD1115.3°170.1°
HAD1CADCBDHBD2125.5°73.3°
HAD2CADCBDCGD125.6°66.8°
HAD2CADCBDHBD15.2°55.1°
HAD2CADCBDHBD2114.0°171.7°
CGDCBDHBD1HBD2118.9°117.9°
CBDCGDO1DO2D178.0°179.9°
CBDCGDO2DC4189.7°179.5°
HBD1CBDCGDO1D60.1°149.8°
HBD1CBDCGDO2D117.9°30.3°
HBD2CBDCGDO1D179.3°32.8°
HBD2CBDCGDO2D1.3°147.3°
O1DCGDO2DC4188.4°0.6°
CGDO2DC41H411180.0°61.8°
CGDO2DC41H41260.0°178.2°
CGDO2DC41H41360.0°58.2°
O2DC41H411H412120.0°119.9°
O2DC41H411H413120.0°119.8°
O2DC41H412H413120.0°119.8°
H411C41H412H413120.0°120.2°

258009

PDB entries from 2026-08-12

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