Obsolete: HDP

HDP was replaced with XTR on

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
P	OP1	doub	1.48Å	1.48Å
P	OP2	sing	1.61Å	1.48Å
P	O5'	sing	1.61Å	1.61Å
P	OP3	sing	1.61Å	461.46Å
OP2	HOP2	sing	0.97Å	0.95Å
O5'	C5B	sing	1.43Å	1.43Å
C5B	C4'	sing	1.53Å	1.53Å
C5B	H5'1	sing	1.09Å	1.10Å
C5B	H5''	sing	1.09Å	1.10Å
C4'	C3'	sing	1.53Å	1.52Å
C4'	C5'	sing	1.50Å	1.53Å
C4'	H4'	sing	1.09Å	1.10Å
C1'	N1	sing	1.47Å	1.48Å
C1'	C2'	sing	1.53Å	1.53Å
C1'	C6'	sing	1.50Å	1.53Å
C1'	H1'	sing	1.09Å	1.10Å
N1	C6	sing	1.37Å	1.37Å
N1	C2	sing	1.34Å	1.38Å
C6	C5	doub	1.35Å	1.35Å
C6	H6	sing	1.08Å	1.08Å
C2	O2	doub	1.22Å	1.23Å
C2	N3	sing	1.35Å	1.38Å
N3	C4	sing	1.35Å	1.38Å
N3	H3	sing	0.97Å	1.00Å
C4	O4	doub	1.22Å	1.22Å
C4	C5	sing	1.42Å	1.44Å
C5	C5A	sing	1.51Å	1.53Å
C5A	H51	sing	1.09Å	1.10Å
C5A	H52	sing	1.09Å	1.10Å
C5A	H53	sing	1.09Å	1.10Å
C2'	C3'	sing	1.53Å	1.52Å
C2'	H2'	sing	1.09Å	1.10Å
C2'	H2''	sing	1.09Å	1.10Å
C3'	O3'	sing	1.43Å	1.43Å
C3'	H3'	sing	1.09Å	1.10Å
O3'	HO3'	sing	0.97Å	0.95Å
C5'	C6'	doub	1.29Å	1.32Å
C5'	H5'	sing	1.08Å	1.08Å
C6'	H6'	sing	1.08Å	1.08Å
OP3	HOP3	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
OP1	P	OP2	119.8°	109.5°
OP1	P	O5'	108.3°	109.5°
OP1	P	OP3	82.6°	109.5°
OP2	P	O5'	108.0°	109.5°
OP2	P	OP3	59.4°	109.5°
P	OP2	HOP2	109.5°	114.0°
O5'	P	OP3	79.2°	109.5°
P	O5'	C5B	120.9°	123.0°
P	OP3	HOP3	82.7°	114.0°
O5'	C5B	C4'	112.2°	109.5°
O5'	C5B	H5'1	108.6°	109.5°
O5'	C5B	H5''	108.6°	109.5°
C4'	C5B	H5'1	108.6°	109.4°
C4'	C5B	H5''	108.6°	109.5°
C5B	C4'	C3'	106.3°	109.4°
C5B	C4'	C5'	111.2°	109.3°
C5B	C4'	H4'	111.2°	109.3°
H5'1	C5B	H5''	110.3°	109.5°
C3'	C4'	C5'	111.4°	110.2°
C3'	C4'	H4'	110.9°	109.4°
C4'	C3'	C2'	109.5°	108.4°
C4'	C3'	O3'	110.3°	109.6°
C4'	C3'	H3'	109.3°	109.6°
C5'	C4'	H4'	106.0°	109.2°
C4'	C5'	C6'	123.0°	124.1°
C4'	C5'	H5'	118.5°	118.0°
N1	C1'	C2'	110.5°	109.3°
N1	C1'	C6'	109.2°	109.4°
N1	C1'	H1'	109.7°	109.3°
C1'	N1	C6	121.3°	119.7°
C1'	N1	C2	117.5°	119.7°
C2'	C1'	C6'	111.5°	110.1°
C2'	C1'	H1'	107.3°	109.4°
C1'	C2'	C3'	111.7°	108.5°
C1'	C2'	H2'	108.8°	109.6°
C1'	C2'	H2''	108.7°	109.6°
C6'	C1'	H1'	108.7°	109.2°
C1'	C6'	C5'	123.1°	124.1°
C1'	C6'	H6'	118.5°	117.9°
C6	N1	C2	121.2°	120.6°
N1	C6	C5	121.3°	119.7°
N1	C6	H6	119.3°	120.2°
N1	C2	O2	122.5°	119.6°
N1	C2	N3	116.1°	121.0°
C5	C6	H6	119.3°	120.1°
C6	C5	C4	121.1°	119.1°
C6	C5	C5A	119.8°	120.4°
O2	C2	N3	121.5°	119.5°
C2	N3	C4	126.3°	120.2°
C2	N3	H3	116.9°	119.9°
C4	N3	H3	116.8°	119.9°
N3	C4	O4	120.6°	120.2°
N3	C4	C5	114.1°	119.4°
O4	C4	C5	125.4°	120.3°
C4	C5	C5A	119.1°	120.5°
C5	C5A	H51	109.5°	109.5°
C5	C5A	H52	109.5°	109.5°
C5	C5A	H53	109.5°	109.5°
H51	C5A	H52	109.5°	109.4°
H51	C5A	H53	109.5°	109.5°
H52	C5A	H53	109.5°	109.5°
C3'	C2'	H2'	108.7°	109.7°
C3'	C2'	H2''	108.8°	109.6°
C2'	C3'	O3'	110.6°	109.7°
C2'	C3'	H3'	109.0°	109.6°
H2'	C2'	H2''	110.2°	109.8°
O3'	C3'	H3'	108.2°	109.8°
C3'	O3'	HO3'	109.5°	114.0°
C6'	C5'	H5'	118.5°	118.0°
C5'	C6'	H6'	118.4°	118.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
OP1	P	OP2	O5'	124.5°	120.0°
OP1	P	OP2	OP3	59.4°	120.0°
OP1	P	O5'	OP3	78.4°	120.0°
OP1	P	OP2	HOP2	0.0°	60.0°
OP1	P	O5'	C5B	33.8°	55.0°
OP1	P	OP3	HOP3	180.0°	180.0°
OP2	P	O5'	OP3	52.6°	120.0°
OP2	P	O5'	C5B	164.9°	175.0°
OP2	P	OP3	HOP3	48.9°	60.0°
O5'	P	OP2	HOP2	124.4°	180.0°
P	O5'	C5B	C4'	166.4°	180.0°
P	O5'	C5B	H5'1	73.6°	60.0°
P	O5'	C5B	H5''	46.4°	60.0°
O5'	P	OP3	HOP3	69.7°	60.0°
OP3	P	OP2	HOP2	59.4°	60.0°
OP3	P	O5'	C5B	112.3°	65.0°
O5'	C5B	C4'	H5'1	120.0°	120.0°
O5'	C5B	C4'	H5''	120.0°	120.1°
O5'	C5B	H5'1	H5''	118.9°	120.0°
O5'	C5B	C4'	C3'	68.6°	175.0°
O5'	C5B	C4'	C5'	52.8°	64.3°
O5'	C5B	C4'	H4'	170.6°	55.2°
C4'	C5B	H5'1	H5''	118.9°	120.0°
C5B	C4'	C3'	C5'	121.2°	120.2°
C5B	C4'	C3'	H4'	121.0°	119.7°
C5B	C4'	C5'	H4'	120.9°	119.5°
C5B	C4'	C3'	C2'	72.4°	169.7°
C5B	C4'	C3'	O3'	165.7°	70.6°
C5B	C4'	C3'	H3'	46.9°	50.0°
C5B	C4'	C5'	C6'	99.8°	137.4°
C5B	C4'	C5'	H5'	80.2°	42.7°
H5'1	C5B	C4'	C3'	51.4°	65.0°
H5'1	C5B	C4'	C5'	172.8°	55.7°
H5'1	C5B	C4'	H4'	69.4°	175.2°
H5''	C5B	C4'	C3'	171.4°	55.0°
H5''	C5B	C4'	C5'	67.2°	175.7°
H5''	C5B	C4'	H4'	50.6°	64.8°
C3'	C4'	C5'	H4'	120.7°	120.2°
C4'	C3'	C2'	C1'	63.5°	67.4°
C4'	C3'	C2'	O3'	121.7°	119.7°
C4'	C3'	C2'	H3'	119.5°	119.7°
C4'	C3'	C2'	H2'	176.5°	52.3°
C4'	C3'	C2'	H2''	56.5°	172.9°
C4'	C3'	O3'	H3'	119.5°	120.5°
C4'	C3'	O3'	HO3'	180.0°	180.0°
C3'	C4'	C5'	C6'	18.5°	17.2°
C3'	C4'	C5'	H5'	161.4°	162.9°
C4'	C5'	C6'	C1'	0.0°	0.5°
C5'	C4'	C3'	C2'	48.8°	49.4°
C5'	C4'	C3'	O3'	73.1°	169.1°
C5'	C4'	C3'	H3'	168.1°	70.2°
C4'	C5'	C6'	H5'	180.0°	179.9°
C4'	C5'	C6'	H6'	180.0°	179.6°
H4'	C4'	C3'	C2'	166.6°	70.6°
H4'	C4'	C3'	O3'	44.7°	49.1°
H4'	C4'	C3'	H3'	74.1°	169.7°
H4'	C4'	C5'	C6'	139.3°	103.0°
H4'	C4'	C5'	H5'	40.7°	76.9°
N1	C1'	C2'	C6'	121.6°	120.2°
N1	C1'	C2'	H1'	119.5°	119.7°
N1	C1'	C6'	H1'	119.6°	119.6°
C1'	N1	C6	C2	179.9°	179.7°
C1'	N1	C6	C5	179.7°	180.0°
C1'	N1	C6	H6	0.2°	0.0°
C1'	N1	C2	O2	0.3°	0.0°
C1'	N1	C2	N3	180.0°	180.0°
N1	C1'	C2'	C3'	165.5°	70.8°
N1	C1'	C2'	H2'	74.5°	169.5°
N1	C1'	C2'	H2''	45.5°	48.9°
N1	C1'	C6'	C5'	134.9°	103.0°
N1	C1'	C6'	H6'	45.1°	76.9°
C2'	C1'	C6'	H1'	118.1°	120.2°
C2'	C1'	N1	C6	44.6°	70.5°
C2'	C1'	N1	C2	135.5°	109.2°
C1'	C2'	C3'	H2'	120.0°	119.7°
C1'	C2'	C3'	H2''	120.0°	119.7°
C1'	C2'	H2'	H2''	119.1°	120.5°
C1'	C2'	C3'	O3'	58.2°	172.9°
C1'	C2'	C3'	H3'	177.0°	52.2°
C2'	C1'	C6'	C5'	12.6°	17.2°
C2'	C1'	C6'	H6'	167.4°	162.9°
C6'	C1'	N1	C6	78.3°	50.2°
C6'	C1'	N1	C2	101.6°	130.1°
C6'	C1'	C2'	C3'	44.0°	49.5°
C6'	C1'	C2'	H2'	164.0°	70.3°
C6'	C1'	C2'	H2''	76.1°	169.1°
C1'	C6'	C5'	H6'	180.0°	179.9°
C1'	C6'	C5'	H5'	180.0°	179.6°
H1'	C1'	N1	C6	162.7°	169.7°
H1'	C1'	N1	C2	17.4°	10.5°
H1'	C1'	C2'	C3'	74.9°	169.5°
H1'	C1'	C2'	H2'	45.1°	49.8°
H1'	C1'	C2'	H2''	165.0°	70.8°
H1'	C1'	C6'	C5'	105.5°	137.3°
H1'	C1'	C6'	H6'	74.5°	42.8°
N1	C6	C5	H6	180.0°	179.9°
C6	N1	C2	O2	179.8°	179.7°
C6	N1	C2	N3	0.1°	0.3°
N1	C6	C5	C4	0.3°	0.1°
N1	C6	C5	C5A	179.4°	180.0°
C2	N1	C6	C5	0.3°	0.2°
C2	N1	C6	H6	179.7°	179.7°
N1	C2	O2	N3	179.7°	180.0°
N1	C2	N3	C4	0.2°	0.0°
N1	C2	N3	H3	179.8°	180.0°
C6	C5	C4	N3	0.1°	0.3°
C6	C5	C4	O4	179.7°	180.0°
C6	C5	C4	C5A	179.7°	179.9°
C6	C5	C5A	H51	180.0°	90.1°
C6	C5	C5A	H52	60.0°	150.0°
C6	C5	C5A	H53	60.0°	30.0°
H6	C6	C5	C4	179.7°	180.0°
H6	C6	C5	C5A	0.6°	0.1°
O2	C2	N3	C4	179.5°	180.0°
O2	C2	N3	H3	0.5°	0.0°
C2	N3	C4	H3	180.0°	180.0°
C2	N3	C4	O4	179.4°	180.0°
C2	N3	C4	C5	0.2°	0.3°
N3	C4	O4	C5	179.6°	179.7°
N3	C4	C5	C5A	179.6°	179.8°
H3	N3	C4	O4	0.6°	0.0°
H3	N3	C4	C5	179.8°	179.7°
O4	C4	C5	C5A	0.0°	0.1°
C4	C5	C5A	H51	0.3°	90.0°
C4	C5	C5A	H52	120.3°	29.9°
C4	C5	C5A	H53	119.7°	149.9°
C5	C5A	H51	H52	120.0°	120.0°
C5	C5A	H51	H53	120.0°	120.0°
C5	C5A	H52	H53	120.0°	120.0°
H51	C5A	H52	H53	120.0°	120.0°
C3'	C2'	H2'	H2''	119.1°	120.5°
C2'	C3'	O3'	H3'	119.3°	120.5°
C2'	C3'	O3'	HO3'	58.7°	61.0°
H2'	C2'	C3'	O3'	61.8°	67.4°
H2'	C2'	C3'	H3'	57.0°	172.0°
H2''	C2'	C3'	O3'	178.3°	53.2°
H2''	C2'	C3'	H3'	63.0°	67.5°
H3'	C3'	O3'	HO3'	60.6°	59.5°
H5'	C5'	C6'	H6'	0.0°	0.3°

Definition date:	2004-07-22
Last modified:	2010-03-30
Release status:	OBS
Processing site:	RCSB
Replaced by:	XTR
Derived from:	1U01