HDF

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N1	C2	sing	1.33Å	1.37Å	Aromatic
N1	C10	doub	1.33Å	1.38Å	Aromatic
C2	O2	doub	1.22Å	1.22Å
C2	N3	sing	1.34Å	1.36Å	Aromatic
N3	C4	sing	1.35Å	1.38Å	Aromatic
N3	HN3	sing	0.97Å	1.02Å
C4	O4	doub	1.22Å	1.22Å
C4	C4A	sing	1.47Å	1.43Å	Aromatic
C4A	C5	doub	1.38Å	1.36Å	Aromatic
C4A	C10	sing	1.47Å	1.39Å	Aromatic
C5	C5A	sing	1.41Å	1.35Å	Aromatic
C5	H5	sing	1.08Å	1.10Å
C5A	C6	doub	1.41Å	1.33Å	Aromatic
C5A	C9A	sing	1.41Å	1.37Å	Aromatic
C6	C7	sing	1.36Å	1.35Å	Aromatic
C6	H6	sing	1.08Å	1.10Å
C7	C8	doub	1.40Å	1.36Å	Aromatic
C7	H7	sing	1.08Å	1.10Å
C8	O8	sing	1.36Å	1.37Å
C8	C9	sing	1.38Å	1.35Å	Aromatic
O8	HO8	sing	0.97Å	0.95Å
C9	C9A	doub	1.39Å	1.34Å	Aromatic
C9	H9	sing	1.08Å	1.10Å
C9A	N10	sing	1.38Å	1.37Å	Aromatic
N10	C10	sing	1.36Å	1.36Å	Aromatic
N10	C1'	sing	1.46Å	1.34Å
C1'	C2'	sing	1.53Å	1.53Å
C1'	H1'1	sing	1.09Å	1.12Å
C1'	H1'2	sing	1.09Å	1.11Å
C2'	O2'	sing	1.43Å	1.42Å
C2'	C3'	sing	1.53Å	1.56Å
C2'	H2'	sing	1.09Å	1.12Å
O2'	HO2'	sing	0.97Å	0.95Å
C3'	O3'	sing	1.43Å	1.41Å
C3'	C4'	sing	1.53Å	1.52Å
C3'	H3'	sing	1.09Å	1.12Å
O3'	HO3'	sing	0.97Å	0.95Å
C4'	O4'	sing	1.43Å	1.42Å
C4'	C5'	sing	1.53Å	1.49Å
C4'	H4'	sing	1.09Å	1.11Å
O4'	HO4'	sing	0.97Å	0.95Å
C5'	O5'	sing	1.43Å	1.43Å
C5'	H5'1	sing	1.09Å	1.11Å
C5'	H5'2	sing	1.09Å	1.11Å
O5'	HO5'	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C2	N1	C10	127.7°	121.5°
N1	C2	O2	123.4°	118.0°
N1	C2	N3	115.0°	124.0°
N1	C10	C4A	112.5°	118.4°
N1	C10	N10	124.7°	121.9°
O2	C2	N3	121.6°	118.0°
C2	N3	C4	125.6°	121.1°
C2	N3	HN3	116.4°	119.4°
C4	N3	HN3	118.0°	119.4°
N3	C4	O4	118.4°	121.4°
N3	C4	C4A	113.9°	117.2°
O4	C4	C4A	127.7°	121.4°
C4	C4A	C5	115.5°	122.3°
C4	C4A	C10	125.2°	117.8°
C5	C4A	C10	119.2°	119.9°
C4A	C5	C5A	119.7°	118.8°
C4A	C5	H5	120.4°	120.6°
C4A	C10	N10	122.8°	119.7°
C5A	C5	H5	119.9°	120.6°
C5	C5A	C6	118.8°	120.0°
C5	C5A	C9A	119.6°	120.2°
C6	C5A	C9A	121.6°	119.8°
C5A	C6	C7	119.8°	120.0°
C5A	C6	H6	119.6°	120.1°
C5A	C9A	C9	118.8°	119.3°
C5A	C9A	N10	123.2°	120.8°
C7	C6	H6	120.5°	120.0°
C6	C7	C8	118.8°	120.5°
C6	C7	H7	120.0°	119.8°
C8	C7	H7	121.3°	119.7°
C7	C8	O8	119.2°	119.7°
C7	C8	C9	121.4°	120.5°
O8	C8	C9	119.0°	119.8°
C8	O8	HO8	119.2°	106.8°
C8	C9	C9A	119.6°	119.9°
C8	C9	H9	120.5°	120.0°
C9A	C9	H9	119.9°	120.0°
C9	C9A	N10	117.9°	119.8°
C9A	N10	C10	115.4°	120.4°
C9A	N10	C1'	122.2°	119.7°
C10	N10	C1'	117.8°	119.8°
N10	C1'	C2'	120.8°	109.5°
N10	C1'	H1'1	108.2°	109.4°
N10	C1'	H1'2	108.2°	109.4°
C2'	C1'	H1'1	108.1°	109.5°
C2'	C1'	H1'2	108.1°	109.5°
C1'	C2'	O2'	110.9°	109.5°
C1'	C2'	C3'	123.6°	109.5°
C1'	C2'	H2'	99.4°	109.4°
H1'1	C1'	H1'2	101.8°	109.5°
O2'	C2'	C3'	115.9°	109.5°
O2'	C2'	H2'	111.9°	109.4°
C2'	O2'	HO2'	110.9°	106.7°
C3'	C2'	H2'	91.1°	109.5°
C2'	C3'	O3'	116.3°	109.4°
C2'	C3'	C4'	125.8°	109.5°
C2'	C3'	H3'	87.5°	109.5°
O3'	C3'	C4'	105.2°	109.5°
O3'	C3'	H3'	117.1°	109.5°
C3'	O3'	HO3'	116.3°	106.8°
C4'	C3'	H3'	103.6°	109.5°
C3'	C4'	O4'	111.8°	109.5°
C3'	C4'	C5'	122.9°	109.5°
C3'	C4'	H4'	97.6°	109.5°
O4'	C4'	C5'	111.9°	109.4°
O4'	C4'	H4'	113.0°	109.5°
C4'	O4'	HO4'	111.8°	106.8°
C5'	C4'	H4'	97.4°	109.4°
C4'	C5'	O5'	110.0°	109.5°
C4'	C5'	H5'1	112.0°	109.4°
C4'	C5'	H5'2	112.0°	109.5°
O5'	C5'	H5'1	112.0°	109.4°
O5'	C5'	H5'2	112.0°	109.5°
C5'	O5'	HO5'	110.0°	106.8°
H5'1	C5'	H5'2	98.4°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N1	C2	O2	N3	176.6°	180.0°
N1	C2	N3	C4	0.8°	0.0°
N1	C2	N3	HN3	179.2°	180.0°
C2	N1	C10	C4A	4.1°	0.6°
C2	N1	C10	N10	173.5°	179.7°
C10	N1	C2	O2	179.5°	179.6°
C10	N1	C2	N3	3.7°	0.3°
N1	C10	C4A	C4	1.8°	0.6°
N1	C10	C4A	C5	177.8°	179.7°
N1	C10	C4A	N10	177.6°	179.1°
N1	C10	N10	C9A	175.8°	179.6°
N1	C10	N10	C1'	27.8°	0.7°
O2	C2	N3	C4	177.7°	180.0°
O2	C2	N3	HN3	2.3°	0.1°
C2	N3	C4	HN3	180.0°	180.0°
C2	N3	C4	O4	179.5°	180.0°
C2	N3	C4	C4A	1.0°	0.0°
N3	C4	O4	C4A	178.2°	180.0°
N3	C4	C4A	C5	175.7°	180.0°
N3	C4	C4A	C10	0.5°	0.3°
HN3	N3	C4	O4	0.5°	0.0°
HN3	N3	C4	C4A	178.9°	180.0°
O4	C4	C4A	C5	2.6°	0.0°
O4	C4	C4A	C10	178.8°	179.7°
C4	C4A	C5	C10	176.4°	179.7°
C4	C4A	C5	C5A	175.8°	180.0°
C4	C4A	C5	H5	4.2°	0.1°
C4	C4A	C10	N10	175.9°	179.7°
C4A	C5	C5A	H5	180.0°	179.9°
C4A	C5	C5A	C6	179.6°	180.0°
C4A	C5	C5A	C9A	0.8°	0.0°
C5	C4A	C10	N10	0.2°	0.6°
C10	C4A	C5	C5A	0.6°	0.3°
C10	C4A	C5	H5	179.4°	179.8°
C4A	C10	N10	C9A	1.5°	0.6°
C4A	C10	N10	C1'	154.9°	179.7°
C5	C5A	C6	C9A	178.8°	180.0°
C5	C5A	C6	C7	178.0°	180.0°
C5	C5A	C6	H6	2.0°	0.0°
C5	C5A	C9A	C9	177.3°	180.0°
C5	C5A	C9A	N10	2.7°	0.0°
H5	C5	C5A	C6	0.4°	0.1°
H5	C5	C5A	C9A	179.2°	179.9°
C5A	C6	C7	H6	180.0°	180.0°
C5A	C6	C7	C8	0.2°	0.0°
C5A	C6	C7	H7	179.7°	180.0°
C6	C5A	C9A	C9	1.5°	0.0°
C6	C5A	C9A	N10	178.5°	180.0°
C9A	C5A	C6	C7	0.8°	0.0°
C9A	C5A	C6	H6	179.2°	180.0°
C5A	C9A	C9	C8	1.0°	0.0°
C5A	C9A	C9	N10	179.9°	180.0°
C5A	C9A	C9	H9	179.0°	180.0°
C5A	C9A	N10	C10	3.0°	0.3°
C5A	C9A	N10	C1'	152.3°	180.0°
C6	C7	C8	H7	180.0°	180.0°
C6	C7	C8	O8	172.5°	180.0°
C6	C7	C8	C9	0.7°	0.0°
H6	C6	C7	C8	179.8°	180.0°
H6	C6	C7	H7	0.2°	0.0°
C7	C8	O8	C9	173.3°	180.0°
C7	C8	O8	HO8	180.0°	90.0°
C7	C8	C9	C9A	0.0°	0.1°
C7	C8	C9	H9	180.0°	180.0°
H7	C7	C8	O8	7.5°	0.0°
H7	C7	C8	C9	179.3°	180.0°
O8	C8	C9	C9A	173.1°	180.0°
O8	C8	C9	H9	6.9°	0.0°
C9	C8	O8	HO8	6.7°	89.9°
C8	C9	C9A	H9	180.0°	180.0°
C8	C9	C9A	N10	178.9°	179.9°
C9	C9A	N10	C10	177.1°	179.7°
C9	C9A	N10	C1'	27.7°	0.0°
H9	C9	C9A	N10	1.1°	0.0°
C9A	N10	C10	C1'	156.4°	179.7°
C9A	N10	C1'	C2'	105.0°	90.0°
C9A	N10	C1'	H1'1	129.8°	30.0°
C9A	N10	C1'	H1'2	20.3°	149.9°
C10	N10	C1'	C2'	100.3°	90.3°
C10	N10	C1'	H1'1	24.9°	149.7°
C10	N10	C1'	H1'2	134.4°	29.8°
N10	C1'	C2'	H1'1	125.3°	120.0°
N10	C1'	C2'	H1'2	125.3°	120.0°
N10	C1'	H1'1	H1'2	113.8°	119.9°
N10	C1'	C2'	O2'	79.2°	59.9°
N10	C1'	C2'	C3'	65.2°	180.0°
N10	C1'	C2'	H2'	162.9°	60.0°
C2'	C1'	H1'1	H1'2	113.7°	120.0°
C1'	C2'	O2'	C3'	147.4°	120.0°
C1'	C2'	O2'	H2'	110.0°	119.9°
C1'	C2'	C3'	H2'	102.1°	120.0°
C1'	C2'	O2'	HO2'	180.0°	60.1°
C1'	C2'	C3'	O3'	14.8°	60.0°
C1'	C2'	C3'	C4'	150.6°	180.0°
C1'	C2'	C3'	H3'	104.3°	60.0°
H1'1	C1'	C2'	O2'	155.6°	179.9°
H1'1	C1'	C2'	C3'	60.0°	60.0°
H1'1	C1'	C2'	H2'	37.7°	60.0°
H1'2	C1'	C2'	O2'	46.2°	60.0°
H1'2	C1'	C2'	C3'	169.5°	60.0°
H1'2	C1'	C2'	H2'	71.8°	180.0°
O2'	C2'	C3'	H2'	115.1°	120.0°
O2'	C2'	C3'	O3'	128.0°	60.0°
O2'	C2'	C3'	C4'	7.8°	60.0°
O2'	C2'	C3'	H3'	112.9°	180.0°
C3'	C2'	O2'	HO2'	32.7°	60.0°
C2'	C3'	O3'	C4'	144.1°	120.0°
C2'	C3'	O3'	H3'	101.5°	120.0°
C2'	C3'	C4'	H3'	96.9°	120.0°
C2'	C3'	O3'	HO3'	180.0°	60.0°
C2'	C3'	C4'	O4'	100.8°	60.0°
C2'	C3'	C4'	C5'	36.7°	180.0°
C2'	C3'	C4'	H4'	140.6°	60.1°
H2'	C2'	O2'	HO2'	70.0°	180.0°
H2'	C2'	C3'	O3'	116.9°	180.0°
H2'	C2'	C3'	C4'	107.3°	60.0°
H2'	C2'	C3'	H3'	2.2°	60.0°
O3'	C3'	C4'	H3'	123.5°	120.0°
O3'	C3'	C4'	O4'	119.6°	60.0°
O3'	C3'	C4'	C5'	103.0°	60.0°
O3'	C3'	C4'	H4'	1.0°	179.9°
C4'	C3'	O3'	HO3'	35.9°	60.0°
C3'	C4'	O4'	C5'	142.2°	120.0°
C3'	C4'	O4'	H4'	109.0°	120.0°
C3'	C4'	C5'	H4'	104.1°	120.0°
C3'	C4'	O4'	HO4'	180.0°	60.0°
C3'	C4'	C5'	O5'	172.9°	180.0°
C3'	C4'	C5'	H5'1	61.9°	60.0°
C3'	C4'	C5'	H5'2	47.6°	60.0°
H3'	C3'	O3'	HO3'	78.5°	180.0°
H3'	C3'	C4'	O4'	3.9°	180.0°
H3'	C3'	C4'	C5'	133.6°	60.0°
H3'	C3'	C4'	H4'	122.5°	60.0°
O4'	C4'	C5'	H4'	118.5°	120.0°
O4'	C4'	C5'	O5'	49.7°	60.0°
O4'	C4'	C5'	H5'1	75.5°	180.0°
O4'	C4'	C5'	H5'2	175.0°	60.0°
C5'	C4'	O4'	HO4'	37.8°	60.0°
C4'	C5'	O5'	H5'1	125.2°	120.0°
C4'	C5'	O5'	H5'2	125.3°	120.1°
C4'	C5'	H5'1	H5'2	117.9°	120.0°
C4'	C5'	O5'	HO5'	180.0°	180.0°
H4'	C4'	O4'	HO4'	71.0°	180.0°
H4'	C4'	C5'	O5'	68.8°	60.0°
H4'	C4'	C5'	H5'1	165.9°	60.0°
H4'	C4'	C5'	H5'2	56.5°	180.0°
O5'	C5'	H5'1	H5'2	117.9°	120.0°
H5'1	C5'	O5'	HO5'	54.7°	60.0°
H5'2	C5'	O5'	HO5'	54.7°	59.9°

Definition date:	1999-07-08
Last modified:	2011-06-04
Release status:	REL
Processing site:	RCSB
Derived from:	1QNF