Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

HD1

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O1C14doub1.22Å1.23Å
C14N4sing1.35Å1.36Å
C14C5sing1.47Å1.53Å
N4C15sing1.46Å1.46Å
C15C20sing1.53Å1.52Å
C15C16sing1.53Å1.53Å
C20C19sing1.53Å1.53Å
C20C21sing1.53Å1.53Å
C19C18sing1.53Å1.54Å
C21C22sing1.53Å1.53Å
C22C23sing1.53Å1.53Å
C22O2sing1.43Å1.42Å
C22C24sing1.53Å1.53Å
C23C18sing1.53Å1.53Å
C18C17sing1.53Å1.53Å
C17C16sing1.53Å1.53Å
C24C16sing1.53Å1.52Å
C5C6sing1.40Å1.38ÅAromatic
C5C4doub1.41Å1.42ÅAromatic
C6C7doub1.37Å1.40ÅAromatic
C7C8sing1.39Å1.40ÅAromatic
C8N2sing1.38Å1.41Å
C8N1doub1.32Å1.36ÅAromatic
N2C12sing1.47Å1.49Å
N2C9sing1.47Å1.47Å
C12C11sing1.53Å1.54Å
C11N3sing1.47Å1.49Å
N3C13sing1.47Å1.49Å
N3C10sing1.47Å1.48Å
C10C9sing1.53Å1.54Å
N1C4sing1.32Å1.35ÅAromatic
C4S1sing1.76Å1.76Å
S1C3sing1.81Å1.78Å
C3C2sing1.53Å1.53Å
C2C1sing1.53Å1.51Å
N4H4sing0.97Å1.00Å
C15H15sing1.09Å1.10Å
C20H20sing1.09Å1.10Å
C16H16sing1.09Å1.10Å
C19H191sing1.09Å1.10Å
C19H192sing1.09Å1.10Å
C21H211sing1.09Å1.10Å
C21H212sing1.09Å1.10Å
C18H18sing1.09Å1.10Å
C23H231sing1.09Å1.10Å
C23H232sing1.09Å1.10Å
O2H2sing0.97Å0.95Å
C24H241sing1.09Å1.10Å
C24H242sing1.09Å1.10Å
C17H171sing1.09Å1.10Å
C17H172sing1.09Å1.10Å
C6H6sing1.08Å1.08Å
C7H7sing1.08Å1.08Å
C12H121sing1.09Å1.10Å
C12H122sing1.09Å1.10Å
C9H91Csing1.09Å1.10Å
C9H92Csing1.09Å1.10Å
C11H111sing1.09Å1.10Å
C11H112sing1.09Å1.10Å
C13H131sing1.09Å1.10Å
C13H132sing1.09Å1.10Å
C13H133sing1.09Å1.10Å
C10H101sing1.09Å1.10Å
C10H102sing1.09Å1.10Å
C3H31Csing1.09Å1.10Å
C3H32Csing1.09Å1.10Å
C2H21Csing1.09Å1.10Å
C2H22Csing1.09Å1.10Å
C1H11Csing1.09Å1.10Å
C1H12Csing1.09Å1.10Å
C1H13Csing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1C14N4122.3°120.0°
O1C14C5120.1°120.0°
N4C14C5117.6°120.0°
C14N4C15123.3°120.0°
C14N4H4118.3°120.0°
C14C5C6119.0°120.5°
C14C5C4122.2°120.5°
N4C15C20111.6°109.5°
N4C15C16109.3°109.4°
C15N4H4118.3°120.0°
N4C15H15109.4°109.5°
C20C15C16109.5°109.5°
C15C20C19110.5°109.4°
C15C20C21108.5°109.5°
C20C15H15108.6°109.5°
C15C20H20109.7°109.5°
C15C16C17110.5°109.5°
C15C16C24109.1°109.5°
C16C15H15108.5°109.5°
C15C16H16109.4°109.5°
C19C20C21109.1°109.5°
C20C19C18110.3°109.5°
C19C20H20109.5°109.4°
C20C19H191109.3°109.4°
C20C19H192109.3°109.5°
C20C21C22109.5°109.4°
C21C20H20109.5°109.5°
C20C21H211109.5°109.5°
C20C21H212109.5°109.5°
C19C18C23108.6°109.5°
C19C18C17109.0°109.5°
C18C19H191109.3°109.5°
C18C19H192109.3°109.5°
C19C18H18110.1°109.4°
C21C22C23109.5°109.5°
C21C22O2109.8°109.4°
C21C22C24109.7°109.5°
C22C21H211109.5°109.5°
C22C21H212109.5°109.5°
C23C22O2109.4°109.5°
C23C22C24109.2°109.5°
C22C23C18110.3°109.5°
C22C23H231109.3°109.5°
C22C23H232109.3°109.5°
O2C22C24109.2°109.4°
C22O2H2109.5°114.0°
C22C24C16109.5°109.5°
C22C24H241109.5°109.5°
C22C24H242109.5°109.5°
C23C18C17108.6°109.5°
C23C18H18110.2°109.5°
C18C23H231109.3°109.4°
C18C23H232109.3°109.4°
C18C17C16110.2°109.5°
C17C18H18110.2°109.5°
C18C17H171109.3°109.5°
C18C17H172109.3°109.5°
C17C16C24108.9°109.5°
C17C16H16109.4°109.5°
C16C17H171109.3°109.5°
C16C17H172109.3°109.5°
C24C16H16109.5°109.5°
C16C24H241109.5°109.5°
C16C24H242109.5°109.4°
C6C5C4118.4°118.9°
C5C6C7119.6°118.6°
C5C6H6120.2°120.7°
C5C4N1121.0°120.3°
C5C4S1120.0°119.8°
C6C7C8120.2°119.6°
C7C6H6120.2°120.7°
C6C7H7119.9°120.2°
C7C8N2120.5°119.4°
C7C8N1119.6°121.1°
C8C7H7119.9°120.2°
N2C8N1119.9°119.5°
C8N2C12109.2°111.0°
C8N2C9109.8°111.0°
C8N1C4121.1°121.5°
C12N2C9108.8°110.9°
N2C12C11110.1°109.4°
N2C12H121109.3°109.5°
N2C12H122109.3°109.5°
N2C9C10113.0°109.4°
N2C9H91C108.6°109.5°
N2C9H92C108.6°109.5°
C12C11N3110.4°109.3°
C11C12H121109.3°109.5°
C11C12H122109.3°109.4°
C12C11H111109.2°109.5°
C12C11H112109.3°109.5°
C11N3C13109.5°111.0°
C11N3C10109.9°110.9°
N3C11H111109.2°109.4°
N3C11H112109.2°109.5°
C13N3C10109.3°111.0°
N3C13H131109.5°109.5°
N3C13H132109.5°109.5°
N3C13H133109.5°109.5°
N3C10C9110.1°109.4°
N3C10H101109.3°109.5°
N3C10H102109.3°109.5°
C10C9H91C108.6°109.5°
C10C9H92C108.5°109.4°
C9C10H101109.3°109.5°
C9C10H102109.3°109.4°
N1C4S1119.0°119.8°
C4S1C3101.8°100.0°
S1C3C2112.0°109.4°
S1C3H31C108.8°109.4°
S1C3H32C108.9°109.5°
C3C2C1110.6°109.4°
C2C3H31C108.8°109.5°
C2C3H32C108.8°109.5°
C3C2H21C109.2°109.5°
C3C2H22C109.2°109.5°
C1C2H21C109.2°109.5°
C1C2H22C109.2°109.5°
C2C1H11C109.5°109.5°
C2C1H12C109.4°109.5°
C2C1H13C109.5°109.4°
H191C19H192109.5°109.5°
H211C21H212109.5°109.5°
H231C23H232109.5°109.4°
H241C24H242109.5°109.5°
H171C17H172109.5°109.4°
H121C12H122109.5°109.5°
H91CC9H92C109.5°109.5°
H111C11H112109.5°109.5°
H131C13H132109.5°109.4°
H131C13H133109.5°109.5°
H132C13H133109.5°109.5°
H101C10H102109.5°109.5°
H31CC3H32C109.5°109.5°
H21CC2H22C109.5°109.5°
H11CC1H12C109.5°109.5°
H11CC1H13C109.5°109.5°
H12CC1H13C109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1C14N4C5179.5°179.8°
O1C14N4C150.0°0.1°
O1C14C5C674.7°180.0°
O1C14C5C4112.7°0.3°
O1C14N4H4180.0°180.0°
C14N4C15H4180.0°179.9°
C14N4C15C2094.2°155.0°
C14N4C15C16144.6°85.0°
N4C14C5C6104.8°0.3°
N4C14C5C467.8°179.5°
C14N4C15H1526.0°35.0°
C5C14N4C15179.6°179.7°
C14C5C6C4172.9°179.7°
C14C5C6C7175.5°180.0°
C14C5C4N1174.7°179.7°
C14C5C4S15.7°0.0°
C5C14N4H40.5°0.2°
C14C5C6H64.5°0.0°
N4C15C20C16121.1°120.0°
N4C15C20H15120.6°120.0°
N4C15C16H15119.2°120.0°
N4C15C20C1963.0°59.9°
N4C15C20C21177.4°180.0°
N4C15C16C1764.2°60.0°
N4C15C16C24176.0°180.0°
N4C15C20H2057.9°60.0°
N4C15C16H1656.2°60.0°
C20C15C16H15118.4°120.0°
C15C20C19C21119.2°120.1°
C15C20C19H20120.9°120.0°
C15C20C21H20119.7°120.0°
C15C20C19C1859.1°60.1°
C15C20C21C2260.6°60.0°
C20C15C16C1758.2°60.0°
C20C15C16C2461.5°60.0°
C20C15N4H485.8°24.9°
C20C15C16H16178.7°180.0°
C15C20C19H191179.2°180.0°
C15C20C19H19261.0°60.0°
C15C20C21H21159.4°60.0°
C15C20C21H212179.4°180.0°
C16C15C20C1958.1°60.0°
C16C15C20C2161.4°60.0°
C15C16C24C2260.0°60.0°
C15C16C17C1859.2°60.0°
C15C16C17C24119.9°120.0°
C15C16C17H16120.5°120.0°
C15C16C24H16119.7°120.0°
C16C15N4H435.4°95.1°
C16C15C20H20179.0°180.0°
C15C16C24H24160.0°60.0°
C15C16C24H242180.0°180.0°
C15C16C17H171179.3°180.0°
C15C16C17H17260.9°60.1°
C19C20C21H20119.9°119.9°
C20C19C18H191120.1°120.0°
C20C19C18H192120.1°120.0°
C19C20C21C2259.9°60.0°
C20C19C18C2359.5°60.0°
C20C19C18C1758.7°60.0°
C19C20C15H15176.4°180.0°
C20C19H191H192119.6°120.0°
C19C20C21H211179.9°180.0°
C19C20C21H21260.1°60.0°
C20C19C18H18179.8°180.0°
C21C20C19C1860.1°60.0°
C20C21C22H211120.0°120.0°
C20C21C22H212120.0°120.0°
C20C21C22C2360.0°60.0°
C20C21C22O2179.8°180.0°
C20C21C22C2459.8°60.0°
C21C20C15H1556.8°60.0°
C21C20C19H19160.0°60.0°
C21C20C19H192179.8°180.0°
C20C21H211H212120.0°120.0°
C19C18C23C2259.4°60.0°
C19C18C23C17118.4°120.0°
C19C18C23H18120.7°120.0°
C19C18C17H18121.0°120.0°
C19C18C17C1658.7°60.0°
C18C19C20H20180.0°180.0°
C18C19H191H192119.6°120.0°
C19C18C23H231179.5°179.9°
C19C18C23H23260.7°60.0°
C19C18C17H171178.8°180.0°
C19C18C17H17261.4°60.0°
C21C22C23O2120.4°120.0°
C21C22C23C24120.1°120.0°
C21C22O2C24120.3°120.0°
C21C22C23C1860.2°60.0°
C21C22C24C1659.5°60.0°
C22C21C20H20179.7°180.0°
C22C21H211H212120.0°120.0°
C21C22C23H231179.6°180.0°
C21C22C23H23259.9°60.0°
C21C22O2H2180.0°180.0°
C21C22C24H24160.5°60.0°
C21C22C24H242179.5°180.0°
C23C22O2C24119.5°120.0°
C22C23C18H231120.1°120.0°
C22C23C18H232120.1°120.0°
C22C23C18C1759.1°60.0°
C23C22C24C1660.5°60.0°
C23C22C21H211180.0°180.0°
C23C22C21H21260.0°60.0°
C22C23C18H18179.9°180.0°
C22C23H231H232119.6°120.1°
C23C22O2H259.8°60.0°
C23C22C24H241179.5°180.0°
C23C22C24H24259.5°59.9°
O2C22C23C18179.4°180.0°
O2C22C24C16179.9°180.0°
O2C22C21H21159.8°60.0°
O2C22C21H21260.2°60.0°
O2C22C23H23159.2°60.0°
O2C22C23H23260.5°60.0°
O2C22C24H24159.9°60.0°
O2C22C24H24260.1°60.1°
C24C22C23C1859.9°60.0°
C22C24C16C1760.7°60.0°
C22C24C16H241120.0°120.0°
C22C24C16H242120.0°120.0°
C22C24C16H16179.7°180.0°
C24C22C21H21160.2°60.0°
C24C22C21H212179.8°180.0°
C24C22C23H23160.3°60.0°
C24C22C23H232180.0°180.0°
C24C22O2H259.7°60.0°
C22C24H241H242120.0°120.1°
C23C18C17H18120.9°120.0°
C23C18C17C1659.4°60.0°
C23C18C19H19160.6°60.0°
C23C18C19H192179.6°180.0°
C18C23H231H232119.6°119.9°
C23C18C17H17160.7°60.0°
C23C18C17H172179.6°180.0°
C18C17C16H171120.1°120.0°
C18C17C16H172120.1°120.0°
C18C17C16C2460.7°60.0°
C18C17C16H16179.7°180.0°
C17C18C19H191178.8°180.0°
C17C18C19H19261.4°60.0°
C17C18C23H23161.1°60.1°
C17C18C23H232179.2°180.0°
C18C17H171H172119.7°120.0°
C17C16C24H16119.6°120.0°
C17C16C15H15176.6°180.0°
C16C17C18H18179.7°180.0°
C17C16C24H241179.3°180.0°
C17C16C24H24259.3°60.0°
C16C17H171H172119.7°120.0°
C24C16C15H1556.9°60.0°
C16C24H241H242120.0°119.9°
C24C16C17H17159.4°60.0°
C24C16C17H172179.2°180.0°
C5C6C7H6180.0°179.9°
C5C6C7C81.2°0.1°
C6C5C4N12.1°0.5°
C6C5C4S1178.4°179.7°
C5C6C7H7178.8°179.9°
C4C5C6C72.6°0.2°
C5C4N1C80.1°0.5°
C5C4N1S1179.6°179.7°
C5C4S1C3136.0°180.0°
C4C5C6H6177.4°179.7°
C6C7C8H7180.0°179.8°
C6C7C8N2179.2°180.0°
C6C7C8N10.8°0.1°
C7C8N2N1178.4°179.9°
C7C8N2C12117.1°179.9°
C7C8N2C92.1°56.1°
C7C8N1C41.4°0.2°
C8C7C6H6178.8°180.0°
C8N2C12C9119.8°123.9°
C8N2C12C11177.8°176.8°
C8N2C9C10176.2°176.8°
N2C8N1C4179.8°179.7°
N2C8C7H70.8°0.2°
C8N2C12H12157.8°63.2°
C8N2C12H12262.1°56.9°
C8N2C9H91C63.3°56.8°
C8N2C9H92C55.6°63.3°
N1C8N2C1261.3°0.1°
N1C8N2C9179.5°123.8°
C8N1C4S1179.6°179.7°
N1C8C7H7179.2°180.0°
N2C12C11H121120.1°120.0°
N2C12C11H122120.1°119.9°
N2C12C11N360.3°58.5°
C12N2C9C1056.8°59.3°
N2C12H121H122119.7°120.1°
C12N2C9H91C177.3°179.3°
C12N2C9H92C63.8°60.6°
N2C12C11H111179.6°178.3°
N2C12C11H11259.8°61.6°
C9N2C12C1158.0°59.3°
N2C9C10N356.1°58.4°
N2C9C10H91C120.5°120.0°
N2C9C10H92C120.5°119.9°
C9N2C12H12162.1°60.7°
C9N2C12H122178.1°179.2°
N2C9H91CH92C118.4°120.1°
N2C9C10H101176.3°178.4°
N2C9C10H10264.0°61.6°
C12C11N3H111120.1°119.9°
C12C11N3H112120.2°120.0°
C12C11N3C13178.9°176.8°
C12C11N3C1058.8°59.4°
C11C12H121H122119.7°120.0°
C12C11H111H112119.6°120.1°
C11N3C13C10120.5°123.8°
C11N3C10C955.7°59.3°
N3C11C12H12159.8°61.6°
N3C11C12H122179.6°178.4°
N3C11H111H112119.6°120.1°
C11N3C13H131180.0°60.0°
C11N3C13H13260.0°179.9°
C11N3C13H13360.0°60.0°
C11N3C10H101175.8°179.3°
C11N3C10H10264.4°60.6°
C13N3C10C9175.9°176.8°
C13N3C11H11161.0°56.9°
C13N3C11H11258.7°63.2°
N3C13H131H132120.0°120.0°
N3C13H131H133120.0°120.1°
N3C13H132H133120.0°120.1°
C13N3C10H10164.0°56.8°
C13N3C10H10255.8°63.2°
N3C10C9H101120.1°120.0°
N3C10C9H102120.1°120.0°
N3C10C9H91C176.6°178.4°
N3C10C9H92C64.4°61.5°
C10N3C11H111178.9°179.3°
C10N3C11H11261.3°60.6°
C10N3C13H13159.5°63.8°
C10N3C13H132179.5°56.2°
C10N3C13H13360.5°176.2°
N3C10H101H102119.7°120.1°
C10C9H91CH92C118.4°120.0°
C9C10H101H102119.7°120.0°
N1C4S1C344.4°0.3°
C4S1C3C286.6°180.0°
C4S1C3H31C33.8°60.0°
C4S1C3H32C153.0°60.0°
S1C3C2H31C120.4°120.0°
S1C3C2H32C120.4°120.0°
S1C3C2C1166.0°180.0°
S1C3H31CH32C118.9°120.0°
S1C3C2H21C45.8°60.0°
S1C3C2H22C73.8°60.0°
C3C2C1H21C120.2°120.0°
C3C2C1H22C120.2°120.0°
C2C3H31CH32C118.8°120.0°
C3C2H21CH22C119.5°120.0°
C3C2C1H11C180.0°60.0°
C3C2C1H12C60.0°60.0°
C3C2C1H13C60.0°180.0°
C1C2C3H31C73.6°60.0°
C1C2C3H32C45.6°60.0°
C1C2H21CH22C119.4°120.0°
C2C1H11CH12C120.0°120.0°
C2C1H11CH13C120.0°120.0°
C2C1H12CH13C120.0°120.0°
H4N4C15H15154.0°145.0°
H15C15C20H2062.8°60.0°
H15C15C16H1662.9°60.0°
H20C20C19H19159.8°60.0°
H20C20C19H19259.9°60.0°
H20C20C21H21160.2°60.1°
H20C20C21H21259.7°59.9°
H16C16C24H24159.7°60.0°
H16C16C24H24260.3°60.0°
H16C16C17H17160.3°60.0°
H16C16C17H17259.5°60.0°
H191C19C18H1860.1°60.0°
H192C19C18H1859.6°60.0°
H18C18C23H23159.8°60.0°
H18C18C23H23259.9°60.0°
H18C18C17H17160.2°60.0°
H18C18C17H17259.6°60.0°
H6C6C7H71.3°0.1°
H121C12C11H11160.4°58.3°
H121C12C11H112179.9°178.4°
H122C12C11H11159.5°61.7°
H122C12C11H11260.3°58.4°
H91CC9C10H10163.2°61.6°
H91CC9C10H10256.5°58.4°
H92CC9C10H10155.7°58.5°
H92CC9C10H102175.5°178.5°
H131C13H132H133120.0°120.0°
H31CC3C2H21C166.2°180.0°
H31CC3C2H22C46.5°59.9°
H32CC3C2H21C74.6°59.9°
H32CC3C2H22C165.7°180.0°
H21CC2C1H11C59.8°NaN°
H21CC2C1H12C179.8°60.0°
H21CC2C1H13C60.2°60.0°
H22CC2C1H11C59.8°60.0°
H22CC2C1H12C60.2°180.0°
H22CC2C1H13C179.8°60.0°
H11CC1H12CH13C120.0°120.0°

246704

PDB entries from 2025-12-24

PDB statisticsPDBj update infoContact PDBjnumon