Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

HC4

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1O1doub1.22Å1.25Å
C1O2sing1.35Å1.79Å
C1C2sing1.42Å1.43Å
O2HO2sing0.97Å0.95Å
C2C3doub1.35Å1.34Å
C2H2sing1.08Å1.08Å
C3C1'sing1.47Å1.42Å
C3H3sing1.08Å1.08Å
C1'C2'doub1.40Å1.41ÅAromatic
C1'C6'sing1.40Å1.39ÅAromatic
C2'C3'sing1.38Å1.38ÅAromatic
C2'H2'sing1.08Å1.08Å
C3'C4'doub1.39Å1.39ÅAromatic
C3'H3'sing1.08Å1.08Å
C4'C5'sing1.39Å1.39ÅAromatic
C4'O4'sing1.36Å1.32Å
C5'C6'doub1.38Å1.37ÅAromatic
C5'H5'sing1.08Å1.08Å
C6'H6'sing1.08Å1.08Å
O4'HO4'sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1C1O2119.5°120.0°
O1C1C2127.6°120.0°
O2C1C2112.8°120.0°
C1O2HO2109.5°114.0°
C1C2C3120.2°120.0°
C1C2H2119.9°120.0°
C3C2H2119.9°120.0°
C2C3C1'126.8°120.0°
C2C3H3116.6°120.0°
C1'C3H3116.6°120.0°
C3C1'C2'120.4°120.1°
C3C1'C6'122.3°120.1°
C2'C1'C6'117.2°119.8°
C1'C2'C3'120.6°119.9°
C1'C2'H2'119.7°120.1°
C1'C6'C5'121.8°119.9°
C1'C6'H6'119.1°120.1°
C3'C2'H2'119.7°120.1°
C2'C3'C4'121.0°120.1°
C2'C3'H3'119.5°119.9°
C4'C3'H3'119.5°120.0°
C3'C4'C5'118.2°120.2°
C3'C4'O4'120.4°119.9°
C5'C4'O4'121.4°119.8°
C4'C5'C6'120.7°120.1°
C4'C5'H5'119.6°119.9°
C4'O4'HO4'109.5°114.0°
C6'C5'H5'119.7°119.9°
C5'C6'H6'119.1°120.1°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1C1O2C2176.3°179.7°
O1C1O2HO20.0°0.1°
O1C1C2C310.5°0.0°
O1C1C2H2169.5°180.0°
O2C1C2C3173.6°179.7°
O2C1C2H26.4°0.3°
C2C1O2HO2176.3°179.8°
C1C2C3H2180.0°180.0°
C1C2C3C1'171.1°180.0°
C1C2C3H38.9°0.0°
C2C3C1'H3180.0°180.0°
C2C3C1'C2'174.5°180.0°
C2C3C1'C6'10.1°0.3°
H2C2C3C1'8.9°0.0°
H2C2C3H3171.1°179.9°
C3C1'C2'C6'175.7°179.7°
C3C1'C2'C3'179.1°180.0°
C3C1'C2'H2'0.9°0.0°
C3C1'C6'C5'180.0°179.7°
C3C1'C6'H6'0.0°0.0°
H3C3C1'C2'5.5°0.0°
H3C3C1'C6'169.9°179.7°
C1'C2'C3'H2'180.0°180.0°
C1'C2'C3'C4'0.8°0.0°
C1'C2'C3'H3'179.2°180.0°
C2'C1'C6'C5'4.4°0.5°
C2'C1'C6'H6'175.6°179.7°
C6'C1'C2'C3'5.3°0.2°
C6'C1'C2'H2'174.7°179.8°
C1'C6'C5'C4'1.0°0.5°
C1'C6'C5'H6'180.0°179.8°
C1'C6'C5'H5'179.0°179.7°
C2'C3'C4'H3'180.0°180.0°
C2'C3'C4'C5'4.6°0.0°
C2'C3'C4'O4'173.7°180.0°
H2'C2'C3'C4'179.2°180.0°
H2'C2'C3'H3'0.8°0.0°
C3'C4'C5'O4'178.3°180.0°
C3'C4'C5'C6'5.6°0.2°
C3'C4'C5'H5'174.4°180.0°
C3'C4'O4'HO4'180.0°89.9°
H3'C3'C4'C5'175.4°180.0°
H3'C3'C4'O4'6.3°0.0°
C4'C5'C6'H5'180.0°179.8°
C4'C5'C6'H6'179.0°179.7°
C5'C4'O4'HO4'1.7°90.0°
O4'C4'C5'C6'172.7°179.7°
O4'C4'C5'H5'7.3°0.1°
H5'C5'C6'H6'1.0°0.1°

246704

PDB entries from 2025-12-24

PDB statisticsPDBj update infoContact PDBjnumon