HAM

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
P	O1P	doub	1.55Å	1.49Å
P	O2P	sing	1.55Å	1.47Å
P	O3P	sing	1.61Å	1.67Å
P	O5'	sing	1.61Å	1.60Å
O3P	C	sing	1.34Å	1.32Å
O5'	C5'	sing	1.43Å	1.43Å
C5'	C4'	sing	1.53Å	1.51Å
C5'	H5'1	sing	1.09Å	1.11Å
C5'	H5'2	sing	1.09Å	1.12Å
C4'	O4'	sing	1.44Å	1.45Å
C4'	C3'	sing	1.54Å	1.52Å
C4'	H4'	sing	1.09Å	1.11Å
O4'	C1'	sing	1.45Å	1.42Å
C3'	O3'	sing	1.43Å	1.43Å
C3'	C2'	sing	1.55Å	1.53Å
C3'	H3'	sing	1.09Å	1.12Å
O3'	HO3'	sing	0.97Å	0.95Å
C2'	O2'	sing	1.43Å	1.41Å
C2'	C1'	sing	1.54Å	1.53Å
C2'	H2'	sing	1.09Å	1.12Å
O2'	HO2'	sing	0.97Å	0.95Å
C1'	N9	sing	1.46Å	1.46Å
C1'	H1'	sing	1.09Å	1.11Å
N9	C8	sing	1.36Å	1.38Å	Aromatic
N9	C4	sing	1.37Å	1.38Å	Aromatic
C8	N7	doub	1.30Å	1.31Å	Aromatic
C8	H8	sing	1.08Å	1.10Å
N7	C5	sing	1.35Å	1.39Å	Aromatic
C5	C6	sing	1.41Å	1.41Å	Aromatic
C5	C4	doub	1.41Å	1.39Å	Aromatic
C6	N6	sing	1.38Å	1.33Å
C6	N1	doub	1.33Å	1.35Å	Aromatic
N6	HN61	sing	0.97Å	1.01Å
N6	HN62	sing	0.97Å	1.01Å
N1	C2	sing	1.32Å	1.35Å	Aromatic
C2	N3	doub	1.32Å	1.34Å	Aromatic
C2	H2	sing	1.08Å	1.10Å
N3	C4	sing	1.33Å	1.35Å	Aromatic
C	O	doub	1.21Å	1.25Å
C	CA	sing	1.51Å	1.58Å
CA	N	sing	1.47Å	1.50Å
CA	CB	sing	1.53Å	1.54Å
CA	HA	sing	1.09Å	1.11Å
N	HN1	sing	1.01Å	1.05Å
N	HN2	sing	1.01Å	1.03Å
N	HN3	sing	1.01Å	1.02Å
CB	CG	sing	1.51Å	1.52Å
CB	HB1	sing	1.09Å	1.12Å
CB	HB2	sing	1.09Å	1.11Å
CG	CD2	doub	1.35Å	1.36Å	Aromatic
CG	ND1	sing	1.34Å	1.39Å	Aromatic
CD2	NE2	sing	1.37Å	1.40Å	Aromatic
CD2	HD2	sing	1.08Å	1.10Å
ND1	CE1	doub	1.31Å	1.32Å	Aromatic
CE1	NE2	sing	1.35Å	1.34Å	Aromatic
CE1	HE1	sing	1.08Å	1.10Å
NE2	HE2	sing	0.97Å	0.98Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1P	P	O2P	117.7°	109.5°
O1P	P	O3P	109.3°	109.5°
O1P	P	O5'	106.3°	109.5°
O2P	P	O3P	109.9°	109.4°
O2P	P	O5'	106.8°	109.5°
O3P	P	O5'	106.1°	109.5°
P	O3P	C	122.2°	120.0°
P	O5'	C5'	121.6°	106.8°
O3P	C	O	126.3°	120.0°
O3P	C	CA	123.0°	120.0°
O5'	C5'	C4'	110.4°	109.5°
O5'	C5'	H5'1	111.9°	109.5°
O5'	C5'	H5'2	111.8°	109.5°
C4'	C5'	H5'1	111.9°	109.5°
C4'	C5'	H5'2	111.9°	109.5°
C5'	C4'	O4'	108.7°	110.4°
C5'	C4'	C3'	114.4°	110.5°
C5'	C4'	H4'	105.3°	110.3°
H5'1	C5'	H5'2	98.6°	109.4°
O4'	C4'	C3'	105.0°	104.8°
O4'	C4'	H4'	114.6°	110.4°
C4'	O4'	C1'	109.9°	105.3°
C3'	C4'	H4'	109.0°	110.3°
C4'	C3'	O3'	110.5°	110.5°
C4'	C3'	C2'	102.9°	104.1°
C4'	C3'	H3'	114.1°	110.5°
O4'	C1'	C2'	107.7°	104.9°
O4'	C1'	N9	108.1°	110.4°
O4'	C1'	H1'	113.6°	110.3°
O3'	C3'	C2'	112.5°	110.6°
O3'	C3'	H3'	104.8°	110.4°
C3'	O3'	HO3'	110.5°	106.8°
C2'	C3'	H3'	112.1°	110.6°
C3'	C2'	O2'	113.8°	110.5°
C3'	C2'	C1'	101.6°	104.0°
C3'	C2'	H2'	111.8°	110.5°
O2'	C2'	C1'	109.1°	110.8°
O2'	C2'	H2'	104.6°	110.5°
C2'	O2'	HO2'	107.3°	106.8°
C1'	C2'	H2'	116.2°	110.4°
C2'	C1'	N9	115.0°	110.4°
C2'	C1'	H1'	106.6°	110.4°
N9	C1'	H1'	106.0°	110.3°
C1'	N9	C8	127.7°	126.3°
C1'	N9	C4	126.7°	126.3°
C8	N9	C4	105.7°	107.5°
N9	C8	N7	114.0°	110.0°
N9	C8	H8	125.2°	125.0°
N9	C4	C5	105.8°	106.0°
N9	C4	N3	127.4°	134.9°
N7	C8	H8	120.9°	125.0°
C8	N7	C5	103.9°	109.4°
N7	C5	C6	132.2°	134.7°
N7	C5	C4	110.7°	107.2°
C6	C5	C4	117.1°	118.1°
C5	C6	N6	123.9°	120.7°
C5	C6	N1	117.6°	118.5°
C5	C4	N3	126.8°	119.1°
N6	C6	N1	118.5°	120.8°
C6	N6	HN61	120.0°	120.0°
C6	N6	HN62	120.3°	120.1°
C6	N1	C2	118.7°	121.2°
HN61	N6	HN62	119.7°	119.9°
N1	C2	N3	129.2°	122.4°
N1	C2	H2	115.8°	118.7°
N3	C2	H2	115.0°	118.8°
C2	N3	C4	110.6°	120.6°
O	C	CA	110.5°	120.0°
C	CA	N	110.6°	109.5°
C	CA	CB	113.6°	109.5°
C	CA	HA	105.2°	109.5°
N	CA	CB	107.7°	109.5°
N	CA	HA	111.4°	109.4°
CA	N	HN1	107.1°	109.5°
CA	N	HN2	109.0°	109.5°
CA	N	HN3	109.4°	109.4°
CB	CA	HA	108.3°	109.5°
CA	CB	CG	114.4°	109.5°
CA	CB	HB1	110.4°	109.5°
CA	CB	HB2	110.4°	109.5°
HN1	N	HN2	109.7°	109.6°
HN1	N	HN3	109.8°	109.4°
HN2	N	HN3	111.7°	109.4°
CG	CB	HB1	110.4°	109.4°
CG	CB	HB2	110.4°	109.5°
CB	CG	CD2	129.2°	126.1°
CB	CG	ND1	121.8°	126.0°
HB1	CB	HB2	99.9°	109.5°
CD2	CG	ND1	108.7°	108.0°
CG	CD2	NE2	106.5°	106.9°
CG	CD2	HD2	125.7°	126.5°
CG	ND1	CE1	106.4°	109.3°
NE2	CD2	HD2	127.8°	126.6°
CD2	NE2	CE1	106.9°	107.2°
CD2	NE2	HE2	126.5°	126.4°
ND1	CE1	NE2	111.5°	108.7°
ND1	CE1	HE1	123.9°	125.6°
NE2	CE1	HE1	124.6°	125.7°
CE1	NE2	HE2	126.5°	126.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1P	P	O2P	O3P	126.0°	120.0°
O1P	P	O2P	O5'	119.3°	120.0°
O1P	P	O3P	O5'	114.3°	120.0°
O1P	P	O3P	C	163.4°	65.0°
O1P	P	O5'	C5'	77.0°	65.0°
O2P	P	O3P	O5'	115.1°	120.0°
O2P	P	O3P	C	66.0°	55.0°
O2P	P	O5'	C5'	156.6°	55.0°
O3P	P	O5'	C5'	39.3°	175.0°
P	O3P	C	O	5.7°	0.1°
P	O3P	C	CA	179.9°	180.0°
O5'	P	O3P	C	49.1°	174.9°
P	O5'	C5'	C4'	145.3°	180.0°
P	O5'	C5'	H5'1	20.0°	59.9°
P	O5'	C5'	H5'2	89.5°	60.0°
O3P	C	O	CA	174.9°	179.9°
O3P	C	CA	N	164.1°	159.9°
O3P	C	CA	CB	74.6°	80.0°
O3P	C	CA	HA	43.6°	40.0°
O5'	C5'	C4'	H5'1	125.2°	120.0°
O5'	C5'	C4'	H5'2	125.2°	120.0°
O5'	C5'	H5'1	H5'2	117.8°	119.9°
O5'	C5'	C4'	O4'	63.0°	66.4°
O5'	C5'	C4'	C3'	54.0°	178.1°
O5'	C5'	C4'	H4'	173.7°	55.8°
C4'	C5'	H5'1	H5'2	117.8°	120.0°
C5'	C4'	O4'	C3'	122.9°	119.0°
C5'	C4'	O4'	H4'	117.5°	122.2°
C5'	C4'	C3'	H4'	117.6°	122.3°
C5'	C4'	O4'	C1'	140.2°	159.4°
C5'	C4'	C3'	O3'	87.7°	98.3°
C5'	C4'	C3'	C2'	151.9°	142.9°
C5'	C4'	C3'	H3'	30.2°	24.2°
H5'1	C5'	C4'	O4'	171.8°	173.6°
H5'1	C5'	C4'	C3'	71.2°	58.1°
H5'1	C5'	C4'	H4'	48.5°	64.2°
H5'2	C5'	C4'	O4'	62.2°	53.6°
H5'2	C5'	C4'	C3'	179.2°	61.9°
H5'2	C5'	C4'	H4'	61.1°	175.8°
O4'	C4'	C3'	H4'	123.3°	118.8°
O4'	C4'	C3'	O3'	153.2°	142.7°
O4'	C4'	C3'	C2'	32.8°	24.0°
O4'	C4'	C3'	H3'	89.0°	94.7°
C4'	O4'	C1'	C2'	5.4°	40.4°
C4'	O4'	C1'	N9	119.4°	159.4°
C4'	O4'	C1'	H1'	123.2°	78.5°
C3'	C4'	O4'	C1'	17.3°	40.4°
C4'	C3'	O3'	C2'	114.4°	114.7°
C4'	C3'	O3'	H3'	123.4°	122.6°
C4'	C3'	C2'	H3'	123.1°	118.7°
C4'	C3'	O3'	HO3'	180.0°	180.0°
C4'	C3'	C2'	O2'	82.3°	118.8°
C4'	C3'	C2'	C1'	34.8°	0.1°
C4'	C3'	C2'	H2'	159.4°	118.6°
H4'	C4'	O4'	C1'	102.3°	78.3°
H4'	C4'	C3'	O3'	29.9°	23.9°
H4'	C4'	C3'	C2'	90.5°	94.8°
H4'	C4'	C3'	H3'	147.7°	146.5°
O4'	C1'	C2'	C3'	25.5°	23.8°
O4'	C1'	C2'	O2'	95.0°	142.6°
O4'	C1'	C2'	N9	120.6°	118.9°
O4'	C1'	C2'	H1'	122.2°	118.8°
O4'	C1'	C2'	H2'	147.1°	94.7°
O4'	C1'	N9	H1'	122.2°	122.1°
O4'	C1'	N9	C8	33.6°	22.2°
O4'	C1'	N9	C4	145.3°	158.0°
O3'	C3'	C2'	H3'	117.9°	122.6°
O3'	C3'	C2'	O2'	36.7°	0.1°
O3'	C3'	C2'	C1'	153.8°	118.8°
O3'	C3'	C2'	H2'	81.6°	122.7°
C2'	C3'	O3'	HO3'	65.6°	65.3°
C3'	C2'	O2'	C1'	112.6°	114.7°
C3'	C2'	O2'	H2'	122.3°	122.6°
C3'	C2'	C1'	H2'	121.6°	118.5°
C3'	C2'	O2'	HO2'	179.6°	61.5°
C3'	C2'	C1'	N9	95.1°	142.7°
C3'	C2'	C1'	H1'	147.7°	95.0°
H3'	C3'	O3'	HO3'	56.6°	57.4°
H3'	C3'	C2'	O2'	154.6°	122.5°
H3'	C3'	C2'	C1'	88.3°	118.5°
H3'	C3'	C2'	H2'	36.3°	0.1°
O2'	C2'	C1'	H2'	117.9°	122.7°
O2'	C2'	C1'	N9	144.4°	98.5°
O2'	C2'	C1'	H1'	27.3°	23.7°
C1'	C2'	O2'	HO2'	67.7°	176.2°
C2'	C1'	N9	H1'	117.5°	122.3°
C2'	C1'	N9	C8	86.7°	93.4°
C2'	C1'	N9	C4	94.4°	86.5°
H2'	C2'	O2'	HO2'	57.3°	61.1°
H2'	C2'	C1'	N9	26.5°	24.2°
H2'	C2'	C1'	H1'	90.7°	146.5°
C1'	N9	C8	C4	179.1°	179.9°
C1'	N9	C8	N7	178.6°	180.0°
C1'	N9	C8	H8	1.4°	0.1°
C1'	N9	C4	C5	178.7°	179.7°
C1'	N9	C4	N3	0.5°	0.2°
H1'	C1'	N9	C8	155.8°	144.3°
H1'	C1'	N9	C4	23.1°	35.8°
N9	C8	N7	H8	179.9°	179.9°
N9	C8	N7	C5	0.4°	0.4°
C8	N9	C4	C5	0.4°	0.2°
C8	N9	C4	N3	179.6°	180.0°
C4	N9	C8	N7	0.5°	0.1°
C4	N9	C8	H8	179.5°	180.0°
N9	C4	C5	N7	0.1°	0.4°
N9	C4	C5	C6	179.3°	179.6°
N9	C4	C5	N3	179.2°	179.9°
N9	C4	N3	C2	179.0°	179.9°
C8	N7	C5	C6	179.6°	179.5°
C8	N7	C5	C4	0.2°	0.5°
H8	C8	N7	C5	179.6°	179.7°
N7	C5	C6	C4	179.4°	178.9°
N7	C5	C6	N6	1.3°	0.8°
N7	C5	C6	N1	179.0°	179.5°
N7	C5	C4	N3	179.4°	179.7°
C5	C6	N6	N1	179.7°	179.8°
C5	C6	N6	HN61	0.5°	179.7°
C5	C6	N6	HN62	179.3°	0.6°
C5	C6	N1	C2	0.4°	0.3°
C6	C5	C4	N3	0.1°	0.5°
C4	C5	C6	N6	179.3°	179.7°
C4	C5	C6	N1	0.4°	0.5°
C5	C4	N3	C2	0.1°	0.3°
C6	N6	HN61	HN62	178.8°	179.7°
N6	C6	N1	C2	179.3°	180.0°
N1	C6	N6	HN61	179.8°	0.0°
N1	C6	N6	HN62	1.1°	179.7°
C6	N1	C2	N3	0.2°	0.0°
C6	N1	C2	H2	179.8°	180.0°
N1	C2	N3	H2	180.0°	180.0°
N1	C2	N3	C4	0.1°	0.0°
H2	C2	N3	C4	179.9°	180.0°
O	C	CA	N	11.0°	20.0°
O	C	CA	CB	110.3°	100.0°
O	C	CA	HA	131.4°	140.0°
C	CA	N	CB	124.7°	120.0°
C	CA	N	HA	116.6°	120.0°
C	CA	CB	HA	116.5°	120.0°
C	CA	N	HN1	17.4°	179.9°
C	CA	N	HN2	101.2°	59.9°
C	CA	N	HN3	136.4°	60.0°
C	CA	CB	CG	171.4°	175.0°
C	CA	CB	HB1	46.2°	65.0°
C	CA	CB	HB2	63.3°	55.0°
N	CA	CB	HA	120.6°	120.0°
CA	N	HN1	HN2	118.2°	120.1°
CA	N	HN1	HN3	118.7°	120.0°
CA	N	HN2	HN3	121.0°	119.9°
N	CA	CB	CG	48.6°	64.9°
N	CA	CB	HB1	76.7°	55.0°
N	CA	CB	HB2	173.8°	175.1°
CB	CA	N	HN1	107.3°	59.9°
CB	CA	N	HN2	134.0°	179.9°
CB	CA	N	HN3	11.7°	60.0°
CA	CB	CG	HB1	125.2°	120.0°
CA	CB	CG	HB2	125.3°	120.0°
CA	CB	HB1	HB2	116.2°	120.0°
CA	CB	CG	CD2	73.7°	125.0°
CA	CB	CG	ND1	113.4°	55.3°
HA	CA	N	HN1	134.0°	60.0°
HA	CA	N	HN2	15.4°	60.1°
HA	CA	N	HN3	107.0°	180.0°
HA	CA	CB	CG	72.0°	55.0°
HA	CA	CB	HB1	162.7°	175.0°
HA	CA	CB	HB2	53.2°	65.0°
HN1	N	HN2	HN3	122.0°	120.0°
CG	CB	HB1	HB2	116.3°	120.0°
CB	CG	CD2	ND1	173.6°	179.7°
CB	CG	CD2	NE2	173.3°	179.9°
CB	CG	CD2	HD2	6.8°	0.1°
CB	CG	ND1	CE1	174.0°	179.9°
HB1	CB	CG	CD2	51.5°	5.0°
HB1	CB	CG	ND1	121.4°	175.3°
HB2	CB	CG	CD2	161.1°	115.0°
HB2	CB	CG	ND1	11.9°	64.7°
CG	CD2	NE2	HD2	179.9°	180.0°
CD2	CG	ND1	CE1	0.2°	0.4°
CG	CD2	NE2	CE1	0.4°	0.0°
CG	CD2	NE2	HE2	179.7°	180.0°
ND1	CG	CD2	NE2	0.4°	0.2°
ND1	CG	CD2	HD2	179.6°	179.8°
CG	ND1	CE1	NE2	0.1°	0.4°
CG	ND1	CE1	HE1	179.9°	179.9°
CD2	NE2	CE1	ND1	0.3°	0.2°
CD2	NE2	CE1	HE2	179.9°	180.0°
CD2	NE2	CE1	HE1	179.7°	180.0°
HD2	CD2	NE2	CE1	179.5°	180.0°
HD2	CD2	NE2	HE2	0.4°	0.0°
ND1	CE1	NE2	HE1	180.0°	179.8°
ND1	CE1	NE2	HE2	179.8°	179.8°
HE1	CE1	NE2	HE2	0.3°	0.0°

Definition date:	1999-07-08
Last modified:	2011-06-04
Release status:	REL
Processing site:	RCSB
Derived from:	1KMM