HAB
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
C1 | C2 | sing | 1.41Å | 1.36Å | Aromatic |
C1 | C6 | doub | 1.40Å | 1.42Å | Aromatic |
C1 | N1 | sing | 1.37Å | 1.50Å | |
C2 | C3 | doub | 1.39Å | 1.41Å | Aromatic |
C2 | C | sing | 1.48Å | 1.53Å | |
C3 | C4 | sing | 1.38Å | 1.40Å | Aromatic |
C3 | H3 | sing | 1.08Å | 1.10Å | |
C4 | C5 | doub | 1.39Å | 1.40Å | Aromatic |
C4 | H4 | sing | 1.08Å | 1.10Å | |
C5 | C6 | sing | 1.38Å | 1.40Å | Aromatic |
C5 | H5 | sing | 1.08Å | 1.10Å | |
C6 | H6 | sing | 1.08Å | 1.10Å | |
C1' | C2' | sing | 1.40Å | 1.40Å | Aromatic |
C1' | C6' | doub | 1.40Å | 1.40Å | Aromatic |
C1' | N1' | sing | 1.36Å | 1.47Å | |
C2' | C3' | doub | 1.38Å | 1.38Å | Aromatic |
C2' | H2' | sing | 1.08Å | 1.10Å | |
C3' | C4' | sing | 1.39Å | 1.39Å | Aromatic |
C3' | H3' | sing | 1.08Å | 1.10Å | |
C4' | C5' | doub | 1.39Å | 1.40Å | Aromatic |
C4' | O4' | sing | 1.36Å | 1.40Å | |
C5' | C6' | sing | 1.38Å | 1.40Å | Aromatic |
C5' | H5' | sing | 1.08Å | 1.10Å | |
C6' | H6' | sing | 1.08Å | 1.10Å | |
C | O | doub | 1.22Å | 1.24Å | |
C | OXT | sing | 1.35Å | 1.42Å | |
N1 | N1' | doub | 1.29Å | 1.30Å | |
OXT | HXT | sing | 0.97Å | 0.95Å | |
O4' | HO4' | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C2 | C1 | C6 | 123.0° | 119.5° |
C2 | C1 | N1 | 122.8° | 120.2° |
C1 | C2 | C3 | 119.2° | 119.5° |
C1 | C2 | C | 121.7° | 120.2° |
C6 | C1 | N1 | 114.1° | 120.3° |
C1 | C6 | C5 | 117.8° | 120.0° |
C1 | C6 | H6 | 121.8° | 120.0° |
C1 | N1 | N1' | 105.6° | 119.9° |
C3 | C2 | C | 119.0° | 120.2° |
C2 | C3 | C4 | 118.8° | 120.0° |
C2 | C3 | H3 | 121.0° | 120.1° |
C2 | C | O | 116.5° | 120.0° |
C2 | C | OXT | 124.8° | 120.0° |
C4 | C3 | H3 | 120.1° | 119.9° |
C3 | C4 | C5 | 121.3° | 120.5° |
C3 | C4 | H4 | 119.6° | 119.8° |
C5 | C4 | H4 | 119.1° | 119.8° |
C4 | C5 | C6 | 119.8° | 120.5° |
C4 | C5 | H5 | 120.1° | 119.8° |
C6 | C5 | H5 | 120.1° | 119.8° |
C5 | C6 | H6 | 120.4° | 120.0° |
C2' | C1' | C6' | 122.6° | 119.8° |
C2' | C1' | N1' | 117.9° | 120.1° |
C1' | C2' | C3' | 117.8° | 119.9° |
C1' | C2' | H2' | 121.5° | 120.1° |
C6' | C1' | N1' | 119.4° | 120.1° |
C1' | C6' | C5' | 118.4° | 119.9° |
C1' | C6' | H6' | 120.8° | 120.1° |
C1' | N1' | N1 | 119.5° | 119.9° |
C3' | C2' | H2' | 120.7° | 120.0° |
C2' | C3' | C4' | 120.9° | 120.1° |
C2' | C3' | H3' | 119.4° | 120.0° |
C4' | C3' | H3' | 119.8° | 119.9° |
C3' | C4' | C5' | 121.1° | 120.2° |
C3' | C4' | O4' | 119.4° | 119.9° |
C5' | C4' | O4' | 119.3° | 119.9° |
C4' | C5' | C6' | 119.1° | 120.1° |
C4' | C5' | H5' | 120.4° | 119.9° |
C4' | O4' | HO4' | 119.4° | 106.8° |
C6' | C5' | H5' | 120.5° | 120.0° |
C5' | C6' | H6' | 120.8° | 120.0° |
O | C | OXT | 118.7° | 120.0° |
C | OXT | HXT | 124.8° | 120.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
C2 | C1 | C6 | N1 | 176.7° | 179.9° |
C1 | C2 | C3 | C | 179.5° | 179.6° |
C1 | C2 | C3 | C4 | 0.9° | 0.4° |
C1 | C2 | C3 | H3 | 179.2° | 179.8° |
C2 | C1 | C6 | C5 | 1.8° | 0.2° |
C2 | C1 | C6 | H6 | 178.2° | 179.8° |
C1 | C2 | C | O | 165.7° | 0.5° |
C1 | C2 | C | OXT | 12.0° | 179.6° |
C2 | C1 | N1 | N1' | 177.8° | 179.8° |
C6 | C1 | C2 | C3 | 2.5° | 0.4° |
C6 | C1 | C2 | C | 178.1° | 180.0° |
C1 | C6 | C5 | C4 | 0.6° | 0.1° |
C1 | C6 | C5 | H6 | 180.0° | 179.9° |
C1 | C6 | C5 | H5 | 179.5° | 180.0° |
C6 | C1 | N1 | N1' | 5.5° | 0.1° |
N1 | C1 | C2 | C3 | 178.9° | 179.7° |
N1 | C1 | C2 | C | 1.7° | 0.1° |
N1 | C1 | C6 | C5 | 178.5° | 179.9° |
N1 | C1 | C6 | H6 | 1.5° | 0.0° |
C1 | N1 | N1' | C1' | 177.4° | 179.9° |
C2 | C3 | C4 | H3 | 180.0° | 179.8° |
C2 | C3 | C4 | C5 | 1.4° | 0.2° |
C2 | C3 | C4 | H4 | 178.6° | 179.8° |
C3 | C2 | C | O | 14.9° | 179.9° |
C3 | C2 | C | OXT | 167.5° | 0.0° |
C | C2 | C3 | C4 | 179.7° | 180.0° |
C | C2 | C3 | H3 | 0.3° | 0.2° |
C2 | C | O | OXT | 177.8° | 180.0° |
C2 | C | OXT | HXT | 180.0° | 180.0° |
C3 | C4 | C5 | H4 | 180.0° | 180.0° |
C3 | C4 | C5 | C6 | 2.1° | 0.0° |
C3 | C4 | C5 | H5 | 177.9° | 180.0° |
H3 | C3 | C4 | C5 | 178.6° | 180.0° |
H3 | C3 | C4 | H4 | 1.4° | 0.0° |
C4 | C5 | C6 | H5 | 180.0° | 180.0° |
C4 | C5 | C6 | H6 | 179.5° | 180.0° |
H4 | C4 | C5 | C6 | 177.9° | 180.0° |
H4 | C4 | C5 | H5 | 2.1° | 0.0° |
H5 | C5 | C6 | H6 | 0.5° | 0.1° |
C2' | C1' | C6' | N1' | 177.1° | 179.9° |
C1' | C2' | C3' | H2' | 180.0° | 180.0° |
C1' | C2' | C3' | C4' | 0.2° | 0.0° |
C1' | C2' | C3' | H3' | 179.8° | 180.0° |
C2' | C1' | C6' | C5' | 1.3° | 0.3° |
C2' | C1' | C6' | H6' | 178.7° | 180.0° |
C2' | C1' | N1' | N1 | 2.1° | 180.0° |
C6' | C1' | C2' | C3' | 1.3° | 0.1° |
C6' | C1' | C2' | H2' | 178.6° | 179.9° |
C1' | C6' | C5' | C4' | 0.1° | 0.5° |
C1' | C6' | C5' | H6' | 180.0° | 179.7° |
C1' | C6' | C5' | H5' | 179.9° | 179.9° |
C6' | C1' | N1' | N1 | 179.3° | 0.1° |
N1' | C1' | C2' | C3' | 178.4° | 180.0° |
N1' | C1' | C2' | H2' | 1.5° | 0.0° |
N1' | C1' | C6' | C5' | 178.3° | 179.8° |
N1' | C1' | C6' | H6' | 1.6° | 0.1° |
C2' | C3' | C4' | H3' | 180.0° | 180.0° |
C2' | C3' | C4' | C5' | 0.9° | 0.3° |
C2' | C3' | C4' | O4' | 177.6° | 180.0° |
H2' | C2' | C3' | C4' | 179.8° | 179.9° |
H2' | C2' | C3' | H3' | 0.2° | 0.0° |
C3' | C4' | C5' | O4' | 176.6° | 179.7° |
C3' | C4' | C5' | C6' | 1.0° | 0.5° |
C3' | C4' | C5' | H5' | 179.0° | 179.9° |
C3' | C4' | O4' | HO4' | 180.0° | 90.0° |
H3' | C3' | C4' | C5' | 179.1° | 179.7° |
H3' | C3' | C4' | O4' | 2.4° | 0.0° |
C4' | C5' | C6' | H5' | 180.0° | 179.5° |
C4' | C5' | C6' | H6' | 179.9° | 179.7° |
C5' | C4' | O4' | HO4' | 3.3° | 90.3° |
O4' | C4' | C5' | C6' | 177.6° | 179.8° |
O4' | C4' | C5' | H5' | 2.4° | 0.2° |
H5' | C5' | C6' | H6' | 0.1° | 0.2° |
O | C | OXT | HXT | 2.3° | 0.0° |