Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
C1 | C2 | sing | 1.51Å | 1.53Å | |
C1 | O1 | doub | 1.21Å | 1.22Å | |
C1 | O2 | sing | 1.34Å | 1.23Å | |
C2 | C1' | sing | 1.51Å | 1.50Å | |
C2 | H21 | sing | 1.09Å | 1.12Å | |
C2 | H22 | sing | 1.09Å | 1.12Å | |
C1' | C2' | doub | 1.38Å | 1.39Å | Aromatic |
C1' | C6' | sing | 1.38Å | 1.40Å | Aromatic |
C2' | C3' | sing | 1.39Å | 1.37Å | Aromatic |
C2' | H2' | sing | 1.08Å | 1.10Å | |
C3' | O3' | sing | 1.36Å | 1.38Å | |
C3' | C4' | doub | 1.39Å | 1.39Å | Aromatic |
O3' | HO3 | sing | 0.97Å | 0.95Å | |
C4' | O4' | sing | 1.36Å | 1.38Å | |
C4' | C5' | sing | 1.39Å | 1.38Å | Aromatic |
O4' | HO4 | sing | 0.97Å | 0.95Å | |
C5' | C6' | doub | 1.38Å | 1.40Å | Aromatic |
C5' | H5' | sing | 1.08Å | 1.10Å | |
C6' | H6' | sing | 1.08Å | 1.10Å | |
O2 | HO2 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C2 | C1 | O1 | 118.1° | 119.9° |
C2 | C1 | O2 | 128.0° | 120.1° |
C1 | C2 | C1' | 118.0° | 109.5° |
C1 | C2 | H21 | 109.1° | 109.4° |
C1 | C2 | H22 | 109.2° | 109.5° |
O1 | C1 | O2 | 113.2° | 120.0° |
C1 | O2 | HO2 | 128.1° | 120.0° |
C1' | C2 | H21 | 109.1° | 109.5° |
C1' | C2 | H22 | 109.1° | 109.5° |
C2 | C1' | C2' | 115.3° | 119.9° |
C2 | C1' | C6' | 125.1° | 119.9° |
H21 | C2 | H22 | 101.0° | 109.4° |
C2' | C1' | C6' | 119.6° | 120.2° |
C1' | C2' | C3' | 120.9° | 120.0° |
C1' | C2' | H2' | 120.2° | 120.1° |
C1' | C6' | C5' | 119.7° | 120.1° |
C1' | C6' | H6' | 120.4° | 120.0° |
C3' | C2' | H2' | 118.9° | 120.0° |
C2' | C3' | O3' | 130.4° | 120.1° |
C2' | C3' | C4' | 119.4° | 119.8° |
O3' | C3' | C4' | 110.3° | 120.1° |
C3' | O3' | HO3 | 130.3° | 106.9° |
C3' | C4' | O4' | 110.5° | 120.1° |
C3' | C4' | C5' | 121.1° | 119.9° |
O4' | C4' | C5' | 128.4° | 120.1° |
C4' | O4' | HO4 | 110.6° | 106.9° |
C4' | C5' | C6' | 119.4° | 120.0° |
C4' | C5' | H5' | 119.8° | 120.1° |
C6' | C5' | H5' | 120.8° | 119.9° |
C5' | C6' | H6' | 119.9° | 119.9° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
C2 | C1 | O1 | O2 | 171.0° | 179.9° |
C1 | C2 | C1' | H21 | 125.3° | 120.0° |
C1 | C2 | C1' | H22 | 125.3° | 120.1° |
C1 | C2 | H21 | H22 | 114.9° | 120.0° |
C1 | C2 | C1' | C2' | 56.7° | 90.4° |
C1 | C2 | C1' | C6' | 124.8° | 90.0° |
C2 | C1 | O2 | HO2 | 180.0° | 179.9° |
O1 | C1 | C2 | C1' | 156.2° | 0.1° |
O1 | C1 | C2 | H21 | 78.6° | 120.1° |
O1 | C1 | C2 | H22 | 30.9° | 120.0° |
O1 | C1 | O2 | HO2 | 10.1° | 0.0° |
O2 | C1 | C2 | C1' | 13.3° | 180.0° |
O2 | C1 | C2 | H21 | 111.9° | 60.0° |
O2 | C1 | C2 | H22 | 138.6° | 59.9° |
C1' | C2 | H21 | H22 | 114.8° | 120.0° |
C2 | C1' | C2' | C6' | 178.5° | 179.7° |
C2 | C1' | C2' | C3' | 179.9° | 179.8° |
C2 | C1' | C2' | H2' | 0.0° | 0.2° |
C2 | C1' | C6' | C5' | 179.6° | 180.0° |
C2 | C1' | C6' | H6' | 0.4° | 0.0° |
H21 | C2 | C1' | C2' | 68.6° | 149.7° |
H21 | C2 | C1' | C6' | 109.9° | 30.0° |
H22 | C2 | C1' | C2' | 178.0° | 29.8° |
H22 | C2 | C1' | C6' | 0.5° | 149.9° |
C1' | C2' | C3' | H2' | 180.0° | 179.5° |
C1' | C2' | C3' | O3' | 179.0° | 179.8° |
C1' | C2' | C3' | C4' | 0.9° | 0.5° |
C2' | C1' | C6' | C5' | 2.0° | 0.3° |
C2' | C1' | C6' | H6' | 178.0° | 179.7° |
C6' | C1' | C2' | C3' | 1.5° | 0.5° |
C6' | C1' | C2' | H2' | 178.5° | 179.9° |
C1' | C6' | C5' | C4' | 1.9° | 0.1° |
C1' | C6' | C5' | H6' | 180.0° | 180.0° |
C1' | C6' | C5' | H5' | 178.2° | 180.0° |
C2' | C3' | O3' | C4' | 179.9° | 179.7° |
C2' | C3' | O3' | HO3 | 180.0° | 89.8° |
C2' | C3' | C4' | O4' | 177.9° | 179.8° |
C2' | C3' | C4' | C5' | 0.8° | 0.3° |
H2' | C2' | C3' | O3' | 1.0° | 0.2° |
H2' | C2' | C3' | C4' | 179.1° | 180.0° |
O3' | C3' | C4' | O4' | 2.2° | 0.0° |
O3' | C3' | C4' | C5' | 179.1° | 180.0° |
C4' | C3' | O3' | HO3 | 0.1° | 90.0° |
C3' | C4' | O4' | C5' | 178.5° | 180.0° |
C3' | C4' | O4' | HO4 | 180.0° | 90.0° |
C3' | C4' | C5' | C6' | 1.3° | 0.1° |
C3' | C4' | C5' | H5' | 178.7° | 180.0° |
O4' | C4' | C5' | C6' | 177.1° | 180.0° |
O4' | C4' | C5' | H5' | 2.9° | 0.0° |
C5' | C4' | O4' | HO4 | 1.4° | 90.0° |
C4' | C5' | C6' | H5' | 180.0° | 179.9° |
C4' | C5' | C6' | H6' | 178.1° | 180.0° |
H5' | C5' | C6' | H6' | 1.9° | 0.0° |