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Summary Geometry Related PDB entries

HA8

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C14	C13	doub	1.31Å	1.39Å
C14	H14	sing	1.08Å	1.08Å
C14	H14A	sing	1.08Å	1.08Å
C13	C12	sing	1.51Å	1.39Å
C13	H13	sing	1.08Å	1.08Å
C12	C11	sing	1.51Å	1.39Å
C12	H12	sing	1.09Å	1.10Å
C12	H12A	sing	1.09Å	1.10Å
C11	N10	doub	1.29Å	1.32Å
C11	H11	sing	1.08Å	1.08Å
N1	C2	doub	1.32Å	1.32Å	Aromatic
N1	C6	sing	1.33Å	1.34Å	Aromatic
C2	N3	sing	1.32Å	1.32Å	Aromatic
C2	H2	sing	1.08Å	1.08Å
N3	C4	doub	1.33Å	1.34Å	Aromatic
C4	C5	sing	1.41Å	1.39Å	Aromatic
C4	N9	sing	1.35Å	1.33Å	Aromatic
C5	C6	doub	1.40Å	1.39Å	Aromatic
C5	N7	sing	1.38Å	1.33Å	Aromatic
C6	N10	sing	1.37Å	1.33Å
N7	C8	sing	1.35Å	1.33Å	Aromatic
N7	HN7	sing	0.97Å	1.00Å
C8	N9	doub	1.30Å	1.33Å	Aromatic
C8	H8	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C13	C14	H14	108.2°	120.0°
C13	C14	H14A	125.9°	120.0°
C14	C13	C12	115.0°	120.0°
C14	C13	H13	122.5°	120.0°
H14	C14	H14A	125.8°	120.0°
C12	C13	H13	122.5°	120.0°
C13	C12	C11	124.8°	109.5°
C13	C12	H12	104.6°	109.5°
C13	C12	H12A	101.0°	109.5°
C11	C12	H12	104.7°	109.5°
C11	C12	H12A	101.1°	109.4°
C12	C11	N10	119.2°	120.0°
C12	C11	H11	120.4°	120.0°
H12	C12	H12A	122.5°	109.5°
N10	C11	H11	120.4°	120.0°
C11	N10	C6	121.4°	120.0°
C2	N1	C6	121.1°	121.0°
N1	C2	N3	121.7°	122.6°
N1	C2	H2	119.2°	118.7°
N1	C6	C5	118.9°	118.5°
N1	C6	N10	121.0°	120.8°
N3	C2	H2	119.1°	118.7°
C2	N3	C4	120.5°	120.7°
N3	C4	C5	119.4°	118.6°
N3	C4	N9	133.7°	134.6°
C5	C4	N9	106.9°	106.8°
C4	C5	C6	118.4°	118.5°
C4	C5	N7	107.5°	106.1°
C4	N9	C8	108.2°	109.8°
C6	C5	N7	134.0°	135.4°
C5	C6	N10	119.9°	120.8°
C5	N7	C8	107.8°	107.3°
C5	N7	HN7	126.1°	126.4°
C8	N7	HN7	126.1°	126.4°
N7	C8	N9	109.6°	110.1°
N7	C8	H8	125.2°	124.9°
N9	C8	H8	125.2°	124.9°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C13	C14	H14	H14A	180.0°	179.7°
C14	C13	C12	H13	180.0°	179.9°
C14	C13	C12	C11	82.9°	125.0°
C14	C13	C12	H12	157.1°	115.0°
C14	C13	C12	H12A	29.0°	5.0°
H14	C14	C13	C12	0.0°	180.0°
H14	C14	C13	H13	180.0°	0.0°
H14A	C14	C13	C12	180.0°	0.3°
H14A	C14	C13	H13	0.0°	179.7°
C13	C12	C11	H12	120.0°	120.0°
C13	C12	C11	H12A	111.9°	120.0°
C13	C12	H12	H12A	113.6°	120.0°
C13	C12	C11	N10	150.5°	124.9°
C13	C12	C11	H11	29.5°	55.0°
H13	C13	C12	C11	97.1°	55.0°
H13	C13	C12	H12	22.9°	65.1°
H13	C13	C12	H12A	151.0°	174.9°
C11	C12	H12	H12A	113.7°	120.0°
C12	C11	N10	H11	180.0°	179.9°
C12	C11	N10	C6	176.3°	180.0°
H12	C12	C11	N10	30.5°	4.9°
H12	C12	C11	H11	149.5°	175.0°
H12A	C12	C11	N10	97.5°	115.0°
H12A	C12	C11	H11	82.4°	65.0°
C11	N10	C6	N1	3.9°	0.1°
C11	N10	C6	C5	171.5°	180.0°
H11	C11	N10	C6	3.7°	0.1°
N1	C2	N3	H2	180.0°	180.0°
N1	C2	N3	C4	0.2°	0.0°
C2	N1	C6	C5	0.4°	0.0°
C2	N1	C6	N10	175.1°	180.0°
C6	N1	C2	N3	0.0°	0.0°
C6	N1	C2	H2	179.9°	180.0°
N1	C6	C5	C4	0.6°	0.0°
N1	C6	C5	N10	175.5°	179.9°
N1	C6	C5	N7	179.9°	180.0°
C2	N3	C4	C5	0.0°	0.0°
C2	N3	C4	N9	179.8°	179.9°
H2	C2	N3	C4	179.9°	180.0°
N3	C4	C5	N9	179.8°	180.0°
N3	C4	C5	C6	0.4°	0.0°
N3	C4	C5	N7	180.0°	180.0°
N3	C4	N9	C8	179.9°	180.0°
C4	C5	C6	N7	179.5°	180.0°
C4	C5	C6	N10	175.0°	179.9°
C4	C5	N7	C8	0.2°	0.0°
C4	C5	N7	HN7	179.8°	180.0°
C5	C4	N9	C8	0.1°	0.1°
N9	C4	C5	C6	179.5°	180.0°
N9	C4	C5	N7	0.2°	0.0°
C4	N9	C8	N7	0.0°	0.1°
C4	N9	C8	H8	180.0°	180.0°
C6	C5	N7	C8	179.4°	180.0°
C6	C5	N7	HN7	0.6°	0.0°
N7	C5	C6	N10	4.5°	0.1°
C5	N7	C8	HN7	180.0°	180.0°
C5	N7	C8	N9	0.1°	0.1°
C5	N7	C8	H8	179.8°	180.0°
N7	C8	N9	H8	180.0°	179.9°
HN7	N7	C8	N9	179.9°	180.0°
HN7	N7	C8	H8	0.1°	0.1°

246905

PDB entries from 2025-12-31

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