H6Y
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| PG | O1G | doub | 1.48Å | 1.47Å | |
| PG | O2G | sing | 1.61Å | 1.54Å | |
| PG | O3G | sing | 1.61Å | 1.55Å | |
| PG | O3B | sing | 1.61Å | 1.59Å | |
| PB | O1B | doub | 1.48Å | 1.47Å | |
| PB | O2B | sing | 1.61Å | 1.52Å | |
| PB | O3B | sing | 1.61Å | 1.59Å | |
| PB | O3A | sing | 1.61Å | 1.59Å | |
| PA | O1A | doub | 1.48Å | 1.49Å | |
| PA | O2A | sing | 1.61Å | 1.54Å | |
| PA | O3A | sing | 1.61Å | 1.59Å | |
| PA | O5' | sing | 1.61Å | 1.57Å | |
| O5' | C5' | sing | 1.43Å | 1.44Å | |
| C5' | C4' | sing | 1.53Å | 1.51Å | |
| C4' | O4' | sing | 1.44Å | 1.44Å | |
| C4' | C3' | sing | 1.54Å | 1.54Å | |
| O4' | C1' | sing | 1.44Å | 1.41Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | C2' | sing | 1.55Å | 1.54Å | |
| C2' | O2' | sing | 1.43Å | 1.42Å | |
| C2' | C1' | sing | 1.55Å | 1.52Å | |
| C1' | N9 | sing | 1.47Å | 1.45Å | |
| N9 | C8 | sing | 1.35Å | 1.42Å | |
| N9 | C4 | sing | 1.38Å | 1.38Å | |
| C8 | O8 | doub | 1.22Å | 1.22Å | |
| C8 | N7 | sing | 1.35Å | 1.37Å | |
| N7 | C5 | sing | 1.39Å | 1.38Å | |
| C5 | C6 | doub | 1.39Å | 1.40Å | Aromatic |
| C5 | C4 | sing | 1.40Å | 1.43Å | Aromatic |
| N3 | C4 | doub | 1.33Å | 1.35Å | Aromatic |
| C6 | N6 | sing | 1.39Å | 1.33Å | |
| C6 | N1 | sing | 1.33Å | 1.35Å | Aromatic |
| N1 | C2 | doub | 1.32Å | 1.33Å | Aromatic |
| C2 | N3 | sing | 1.32Å | 1.34Å | Aromatic |
| O2G | H2G | sing | 0.97Å | 0.95Å | |
| O3G | H3G | sing | 0.97Å | 0.95Å | |
| O2B | H2B | sing | 0.97Å | 0.95Å | |
| O2A | H2A | sing | 0.97Å | 0.95Å | |
| C5' | H5'1 | sing | 1.09Å | 1.10Å | |
| C5' | H5'2 | sing | 1.09Å | 1.10Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| N7 | H7 | sing | 0.97Å | 1.00Å | |
| N6 | H61N | sing | 0.97Å | 1.00Å | |
| N6 | H62N | sing | 0.97Å | 1.00Å | |
| C2 | H2 | sing | 1.08Å | 1.08Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O1G | PG | O2G | 112.8° | 109.5° |
| O1G | PG | O3G | 113.5° | 109.5° |
| O1G | PG | O3B | 107.9° | 109.5° |
| O2G | PG | O3G | 109.3° | 109.5° |
| O2G | PG | O3B | 107.0° | 109.5° |
| PG | O2G | H2G | 109.5° | 114.0° |
| O3G | PG | O3B | 105.9° | 109.4° |
| PG | O3G | H3G | 109.5° | 114.0° |
| PG | O3B | PB | 127.4° | 134.0° |
| O1B | PB | O2B | 111.1° | 109.5° |
| O1B | PB | O3B | 112.5° | 109.5° |
| O1B | PB | O3A | 108.4° | 109.5° |
| O2B | PB | O3B | 112.2° | 109.5° |
| O2B | PB | O3A | 112.4° | 109.5° |
| PB | O2B | H2B | 109.5° | 114.0° |
| O3B | PB | O3A | 99.8° | 109.5° |
| PB | O3A | PA | 137.2° | 134.0° |
| O1A | PA | O2A | 111.0° | 109.5° |
| O1A | PA | O3A | 105.3° | 109.4° |
| O1A | PA | O5' | 117.0° | 109.5° |
| O2A | PA | O3A | 110.7° | 109.5° |
| O2A | PA | O5' | 107.6° | 109.5° |
| PA | O2A | H2A | 109.5° | 114.0° |
| O3A | PA | O5' | 105.1° | 109.5° |
| PA | O5' | C5' | 121.5° | 123.0° |
| O5' | C5' | C4' | 108.6° | 109.5° |
| O5' | C5' | H5'1 | 109.7° | 109.5° |
| O5' | C5' | H5'2 | 109.7° | 109.4° |
| C5' | C4' | O4' | 109.4° | 109.9° |
| C5' | C4' | C3' | 116.6° | 109.9° |
| C4' | C5' | H5'1 | 109.7° | 109.5° |
| C4' | C5' | H5'2 | 109.7° | 109.5° |
| C5' | C4' | H4' | 107.9° | 109.9° |
| O4' | C4' | C3' | 106.5° | 107.3° |
| C4' | O4' | C1' | 108.1° | 106.9° |
| O4' | C4' | H4' | 108.7° | 109.9° |
| C4' | C3' | O3' | 108.8° | 110.5° |
| C4' | C3' | C2' | 103.4° | 104.2° |
| C3' | C4' | H4' | 107.5° | 110.0° |
| C4' | C3' | H3' | 110.3° | 110.5° |
| O4' | C1' | C2' | 105.1° | 103.5° |
| O4' | C1' | N9 | 107.8° | 110.6° |
| O4' | C1' | H1' | 108.8° | 110.6° |
| O3' | C3' | C2' | 111.9° | 110.5° |
| O3' | C3' | H3' | 111.9° | 110.4° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C3' | C2' | O2' | 111.2° | 110.9° |
| C3' | C2' | C1' | 100.2° | 102.1° |
| C2' | C3' | H3' | 110.3° | 110.5° |
| C3' | C2' | H2' | 111.0° | 110.9° |
| O2' | C2' | C1' | 109.6° | 110.9° |
| O2' | C2' | H2' | 112.9° | 110.8° |
| C2' | O2' | HO2' | 109.5° | 114.0° |
| C2' | C1' | N9 | 119.4° | 110.6° |
| C2' | C1' | H1' | 107.3° | 110.7° |
| C1' | C2' | H2' | 111.3° | 111.0° |
| C1' | N9 | C8 | 125.7° | 125.7° |
| C1' | N9 | C4 | 124.2° | 125.7° |
| N9 | C1' | H1' | 108.2° | 110.7° |
| C8 | N9 | C4 | 109.9° | 108.6° |
| N9 | C8 | O8 | 126.4° | 125.2° |
| N9 | C8 | N7 | 106.5° | 109.6° |
| N9 | C4 | C5 | 105.7° | 106.9° |
| N9 | C4 | N3 | 127.4° | 134.1° |
| O8 | C8 | N7 | 127.1° | 125.2° |
| C8 | N7 | C5 | 109.5° | 108.1° |
| C8 | N7 | H7 | 125.2° | 125.9° |
| N7 | C5 | C6 | 137.5° | 134.5° |
| N7 | C5 | C4 | 108.4° | 106.9° |
| C5 | N7 | H7 | 125.3° | 126.0° |
| C6 | C5 | C4 | 114.1° | 118.6° |
| C5 | C6 | N6 | 121.0° | 120.7° |
| C5 | C6 | N1 | 120.2° | 118.5° |
| C5 | C4 | N3 | 126.9° | 119.0° |
| C4 | N3 | C2 | 111.6° | 120.6° |
| N6 | C6 | N1 | 118.7° | 120.8° |
| C6 | N6 | H61N | 109.5° | 120.1° |
| C6 | N6 | H62N | 109.5° | 119.9° |
| C6 | N1 | C2 | 118.6° | 120.9° |
| N1 | C2 | N3 | 128.4° | 122.3° |
| N1 | C2 | H2 | 115.8° | 118.8° |
| N3 | C2 | H2 | 115.8° | 118.9° |
| H5'1 | C5' | H5'2 | 109.5° | 109.5° |
| H61N | N6 | H62N | 109.5° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O1G | PG | O2G | O3G | 127.3° | 120.0° |
| O1G | PG | O2G | O3B | 118.5° | 120.0° |
| O1G | PG | O3G | O3B | 118.2° | 120.0° |
| O1G | PG | O3B | PB | 173.0° | 39.9° |
| O1G | PG | O2G | H2G | 0.0° | 60.0° |
| O1G | PG | O3G | H3G | 0.0° | 180.0° |
| O2G | PG | O3G | O3B | 114.9° | 120.0° |
| O2G | PG | O3B | PB | 51.3° | 160.0° |
| O2G | PG | O3G | H3G | 126.9° | 60.0° |
| O3G | PG | O3B | PB | 65.2° | 80.0° |
| O3G | PG | O2G | H2G | 127.3° | 60.0° |
| PG | O3B | PB | O1B | 158.1° | 44.9° |
| PG | O3B | PB | O2B | 75.8° | 75.0° |
| PG | O3B | PB | O3A | 43.4° | 164.9° |
| O3B | PG | O2G | H2G | 118.5° | 180.0° |
| O3B | PG | O3G | H3G | 118.2° | 60.1° |
| O1B | PB | O2B | O3B | 126.9° | 120.0° |
| O1B | PB | O2B | O3A | 121.6° | 120.0° |
| O1B | PB | O3B | O3A | 114.7° | 120.0° |
| O1B | PB | O3A | PA | 84.0° | 40.0° |
| O1B | PB | O2B | H2B | 0.0° | 179.9° |
| O2B | PB | O3B | O3A | 119.2° | 120.0° |
| O2B | PB | O3A | PA | 39.2° | 80.0° |
| O3B | PB | O3A | PA | 158.2° | 160.0° |
| O3B | PB | O2B | H2B | 126.9° | 60.0° |
| PB | O3A | PA | O1A | 158.4° | 40.0° |
| PB | O3A | PA | O2A | 38.4° | 80.0° |
| PB | O3A | PA | O5' | 77.4° | 160.0° |
| O3A | PB | O2B | H2B | 121.6° | 60.1° |
| O1A | PA | O2A | O3A | 116.5° | 119.9° |
| O1A | PA | O2A | O5' | 129.2° | 120.1° |
| O1A | PA | O3A | O5' | 124.2° | 120.0° |
| O1A | PA | O5' | C5' | 3.1° | 55.0° |
| O1A | PA | O2A | H2A | 0.0° | 180.0° |
| O2A | PA | O3A | O5' | 115.8° | 120.0° |
| O2A | PA | O5' | C5' | 122.5° | 65.1° |
| O3A | PA | O5' | C5' | 119.5° | 175.0° |
| O3A | PA | O2A | H2A | 116.5° | 60.0° |
| PA | O5' | C5' | C4' | 107.6° | 180.0° |
| O5' | PA | O2A | H2A | 129.2° | 60.0° |
| PA | O5' | C5' | H5'1 | 132.5° | 60.0° |
| PA | O5' | C5' | H5'2 | 12.3° | 60.1° |
| O5' | C5' | C4' | H5'1 | 119.8° | 120.1° |
| O5' | C5' | C4' | H5'2 | 119.9° | 119.9° |
| O5' | C5' | C4' | O4' | 169.0° | 66.5° |
| O5' | C5' | C4' | C3' | 70.1° | 175.7° |
| O5' | C5' | H5'1 | H5'2 | 120.4° | 120.0° |
| O5' | C5' | C4' | H4' | 50.9° | 54.5° |
| C5' | C4' | O4' | C3' | 126.9° | 119.5° |
| C5' | C4' | O4' | H4' | 117.5° | 121.0° |
| C5' | C4' | C3' | H4' | 121.2° | 121.1° |
| C5' | C4' | O4' | C1' | 140.5° | 146.0° |
| C5' | C4' | C3' | O3' | 131.2° | 119.9° |
| C5' | C4' | C3' | C2' | 109.8° | 121.4° |
| C4' | C5' | H5'1 | H5'2 | 120.4° | 120.0° |
| C5' | C4' | C3' | H3' | 8.1° | 2.7° |
| O4' | C4' | C3' | H4' | 116.4° | 119.5° |
| O4' | C4' | C3' | O3' | 106.4° | 120.7° |
| O4' | C4' | C3' | C2' | 12.6° | 2.0° |
| C4' | O4' | C1' | C2' | 34.9° | 40.1° |
| C4' | O4' | C1' | N9 | 163.2° | 158.6° |
| O4' | C4' | C5' | H5'1 | 49.1° | 53.6° |
| O4' | C4' | C5' | H5'2 | 71.1° | 173.6° |
| O4' | C4' | C3' | H3' | 130.5° | 116.8° |
| C4' | O4' | C1' | H1' | 79.7° | 78.5° |
| C3' | C4' | O4' | C1' | 13.6° | 26.5° |
| C4' | C3' | O3' | C2' | 113.6° | 114.8° |
| C4' | C3' | O3' | H3' | 122.1° | 122.6° |
| C4' | C3' | C2' | H3' | 117.9° | 118.8° |
| C4' | C3' | C2' | O2' | 147.4° | 139.1° |
| C4' | C3' | C2' | C1' | 31.5° | 20.9° |
| C3' | C4' | C5' | H5'1 | 170.0° | 64.3° |
| C3' | C4' | C5' | H5'2 | 49.8° | 55.7° |
| C4' | C3' | O3' | HO3' | 180.0° | 180.0° |
| C4' | C3' | C2' | H2' | 86.1° | 97.3° |
| O4' | C1' | C2' | C3' | 41.1° | 37.1° |
| O4' | C1' | C2' | O2' | 158.1° | 155.3° |
| O4' | C1' | C2' | N9 | 121.0° | 118.5° |
| O4' | C1' | C2' | H1' | 115.7° | 118.6° |
| O4' | C1' | N9 | H1' | 117.4° | 123.0° |
| O4' | C1' | N9 | C8 | 73.5° | 53.6° |
| O4' | C1' | N9 | C4 | 100.5° | 126.8° |
| C1' | O4' | C4' | H4' | 102.0° | 93.0° |
| O4' | C1' | C2' | H2' | 76.3° | 81.1° |
| O3' | C3' | C2' | H3' | 125.3° | 122.5° |
| O3' | C3' | C2' | O2' | 30.5° | 20.4° |
| O3' | C3' | C2' | C1' | 85.4° | 97.8° |
| O3' | C3' | C4' | H4' | 10.0° | 1.2° |
| O3' | C3' | C2' | H2' | 157.0° | 143.9° |
| C3' | C2' | O2' | C1' | 109.9° | 112.7° |
| C3' | C2' | O2' | H2' | 125.5° | 123.6° |
| C3' | C2' | C1' | H2' | 117.5° | 118.2° |
| C3' | C2' | C1' | N9 | 162.1° | 155.5° |
| C2' | C3' | C4' | H4' | 129.0° | 117.5° |
| C3' | C2' | C1' | H1' | 74.5° | 81.5° |
| C2' | C3' | O3' | HO3' | 66.5° | 65.2° |
| C3' | C2' | O2' | HO2' | 180.0° | 61.5° |
| O2' | C2' | C1' | H2' | 125.6° | 123.6° |
| O2' | C2' | C1' | N9 | 80.9° | 86.3° |
| O2' | C2' | C3' | H3' | 94.8° | 102.2° |
| O2' | C2' | C1' | H1' | 42.5° | 36.7° |
| C2' | C1' | N9 | H1' | 123.0° | 123.0° |
| C2' | C1' | N9 | C8 | 46.1° | 60.4° |
| C2' | C1' | N9 | C4 | 139.9° | 119.2° |
| C1' | C2' | C3' | H3' | 149.4° | 139.7° |
| C1' | C2' | O2' | HO2' | 70.1° | 174.1° |
| C1' | N9 | C8 | C4 | 174.7° | 179.7° |
| C1' | N9 | C8 | O8 | 3.6° | 0.1° |
| C1' | N9 | C8 | N7 | 176.9° | 179.9° |
| C1' | N9 | C4 | C5 | 176.3° | 179.9° |
| C1' | N9 | C4 | N3 | 4.2° | 0.7° |
| N9 | C1' | C2' | H2' | 44.7° | 37.3° |
| N9 | C8 | O8 | N7 | 179.4° | 179.9° |
| N9 | C8 | N7 | C5 | 2.0° | 0.0° |
| C8 | N9 | C4 | C5 | 1.4° | 0.4° |
| C8 | N9 | C4 | N3 | 179.0° | 179.6° |
| C8 | N9 | C1' | H1' | 169.1° | 176.6° |
| N9 | C8 | N7 | H7 | 178.0° | 179.9° |
| C4 | N9 | C8 | O8 | 178.3° | 179.8° |
| C4 | N9 | C8 | N7 | 2.2° | 0.3° |
| N9 | C4 | C5 | N7 | 0.2° | 0.4° |
| N9 | C4 | C5 | C6 | 177.4° | 179.8° |
| N9 | C4 | C5 | N3 | 179.6° | 179.4° |
| N9 | C4 | N3 | C2 | 178.0° | 179.6° |
| C4 | N9 | C1' | H1' | 16.9° | 3.8° |
| O8 | C8 | N7 | C5 | 178.5° | 180.0° |
| O8 | C8 | N7 | H7 | 1.6° | 0.0° |
| C8 | N7 | C5 | H7 | 180.0° | 179.9° |
| C8 | N7 | C5 | C6 | 177.9° | 180.0° |
| C8 | N7 | C5 | C4 | 1.2° | 0.2° |
| N7 | C5 | C6 | C4 | 176.6° | 179.7° |
| N7 | C5 | C4 | N3 | 179.8° | 179.7° |
| N7 | C5 | C6 | N6 | 1.6° | 0.0° |
| N7 | C5 | C6 | N1 | 177.2° | 179.9° |
| C6 | C5 | C4 | N3 | 2.2° | 0.5° |
| C5 | C6 | N6 | N1 | 178.8° | 180.0° |
| C5 | C6 | N1 | C2 | 1.4° | 0.1° |
| C6 | C5 | N7 | H7 | 2.1° | 0.1° |
| C5 | C6 | N6 | H61N | 178.8° | 0.0° |
| C5 | C6 | N6 | H62N | 61.1° | 180.0° |
| C4 | C5 | C6 | N6 | 178.2° | 179.8° |
| C4 | C5 | C6 | N1 | 0.6° | 0.2° |
| C5 | C4 | N3 | C2 | 1.5° | 0.5° |
| C4 | C5 | N7 | H7 | 178.8° | 179.9° |
| C4 | N3 | C2 | N1 | 0.9° | 0.2° |
| C4 | N3 | C2 | H2 | 179.1° | 179.7° |
| N6 | C6 | N1 | C2 | 179.8° | 180.0° |
| C6 | N6 | H61N | H62N | 120.0° | 180.0° |
| C6 | N1 | C2 | N3 | 2.4° | 0.1° |
| N1 | C6 | N6 | H61N | 0.0° | 180.0° |
| N1 | C6 | N6 | H62N | 120.0° | 0.0° |
| C6 | N1 | C2 | H2 | 177.7° | 180.0° |
| N1 | C2 | N3 | H2 | 180.0° | 179.9° |
| H5'1 | C5' | C4' | H4' | 68.9° | 174.6° |
| H5'2 | C5' | C4' | H4' | 170.8° | 65.4° |
| H4' | C4' | C3' | H3' | 113.1° | 123.8° |
| H3' | C3' | O3' | HO3' | 57.9° | 57.4° |
| H3' | C3' | C2' | H2' | 31.7° | 21.4° |
| H1' | C1' | C2' | H2' | 168.0° | 160.3° |
| H2' | C2' | O2' | HO2' | 54.5° | 62.2° |
