H5W
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C07 | C04 | sing | 1.51Å | 1.51Å | |
| C04 | C03 | doub | 1.38Å | 1.38Å | Aromatic |
| C04 | C05 | sing | 1.39Å | 1.38Å | Aromatic |
| C03 | C02 | sing | 1.39Å | 1.38Å | Aromatic |
| C05 | C06 | doub | 1.38Å | 1.38Å | Aromatic |
| C02 | N02 | sing | 1.39Å | 1.33Å | |
| C02 | N01 | doub | 1.32Å | 1.36Å | Aromatic |
| C5' | N1' | sing | 1.49Å | 1.46Å | |
| C5' | C4' | sing | 1.54Å | 1.52Å | |
| C06 | N01 | sing | 1.32Å | 1.37Å | Aromatic |
| C06 | C08 | sing | 1.51Å | 1.52Å | |
| N1' | C2' | sing | 1.49Å | 1.45Å | |
| O09 | C10 | sing | 1.43Å | 1.44Å | |
| O09 | C3' | sing | 1.43Å | 1.44Å | |
| C08 | C4' | sing | 1.53Å | 1.53Å | |
| C4' | C3' | sing | 1.54Å | 1.52Å | |
| C10 | C11 | sing | 1.53Å | 1.55Å | |
| C3' | C2' | sing | 1.54Å | 1.53Å | |
| C11 | C12 | sing | 1.51Å | 1.53Å | |
| C12 | C13 | doub | 1.33Å | 1.36Å | |
| C13 | C21 | sing | 1.48Å | 1.49Å | |
| C21 | C26 | doub | 1.39Å | 1.40Å | Aromatic |
| C21 | C22 | sing | 1.39Å | 1.40Å | Aromatic |
| C26 | C25 | sing | 1.38Å | 1.41Å | Aromatic |
| C22 | C23 | doub | 1.38Å | 1.41Å | Aromatic |
| C25 | C24 | doub | 1.38Å | 1.40Å | Aromatic |
| C23 | C24 | sing | 1.39Å | 1.41Å | Aromatic |
| C23 | F23 | sing | 1.35Å | 1.35Å | |
| C24 | H1 | sing | 1.08Å | 1.08Å | |
| C25 | H2 | sing | 1.08Å | 1.08Å | |
| C26 | H3 | sing | 1.08Å | 1.08Å | |
| C22 | H4 | sing | 1.08Å | 1.08Å | |
| C13 | H5 | sing | 1.08Å | 1.08Å | |
| C12 | H6 | sing | 1.08Å | 1.08Å | |
| C11 | H7 | sing | 1.09Å | 1.10Å | |
| C11 | H8 | sing | 1.09Å | 1.10Å | |
| C10 | H9 | sing | 1.09Å | 1.10Å | |
| C10 | H10 | sing | 1.09Å | 1.10Å | |
| C3' | H11 | sing | 1.09Å | 1.10Å | |
| C2' | H12 | sing | 1.09Å | 1.10Å | |
| C2' | H13 | sing | 1.09Å | 1.10Å | |
| N1' | H14 | sing | 1.01Å | 1.00Å | |
| C5' | H16 | sing | 1.09Å | 1.10Å | |
| C5' | H17 | sing | 1.09Å | 1.10Å | |
| C4' | H18 | sing | 1.09Å | 1.10Å | |
| C08 | H19 | sing | 1.09Å | 1.10Å | |
| C08 | H20 | sing | 1.09Å | 1.10Å | |
| N02 | H21 | sing | 0.97Å | 1.00Å | |
| N02 | H22 | sing | 0.97Å | 1.00Å | |
| C03 | H23 | sing | 1.08Å | 1.08Å | |
| C05 | H24 | sing | 1.08Å | 1.08Å | |
| C07 | H25 | sing | 1.09Å | 1.10Å | |
| C07 | H26 | sing | 1.09Å | 1.10Å | |
| C07 | H27 | sing | 1.09Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C07 | C04 | C03 | 122.0° | 120.8° |
| C07 | C04 | C05 | 118.6° | 120.7° |
| C04 | C07 | H25 | 109.5° | 109.5° |
| C04 | C07 | H26 | 109.5° | 109.5° |
| C04 | C07 | H27 | 109.5° | 109.4° |
| C03 | C04 | C05 | 119.3° | 118.5° |
| C04 | C03 | C02 | 119.0° | 119.1° |
| C04 | C03 | H23 | 120.5° | 120.4° |
| C04 | C05 | C06 | 120.8° | 119.3° |
| C04 | C05 | H24 | 119.6° | 120.4° |
| C03 | C02 | N02 | 119.1° | 119.7° |
| C03 | C02 | N01 | 121.3° | 120.6° |
| C02 | C03 | H23 | 120.5° | 120.5° |
| C05 | C06 | N01 | 119.0° | 120.9° |
| C05 | C06 | C08 | 116.7° | 119.5° |
| C06 | C05 | H24 | 119.6° | 120.3° |
| N02 | C02 | N01 | 119.6° | 119.7° |
| C02 | N02 | H21 | 109.5° | 120.0° |
| C02 | N02 | H22 | 109.5° | 120.0° |
| C02 | N01 | C06 | 120.5° | 121.6° |
| N1' | C5' | C4' | 99.8° | 104.6° |
| C5' | N1' | C2' | 112.2° | 104.2° |
| C5' | N1' | H14 | 108.8° | 111.0° |
| N1' | C5' | H16 | 111.8° | 110.4° |
| N1' | C5' | H17 | 111.8° | 110.4° |
| C5' | C4' | C08 | 118.1° | 110.3° |
| C5' | C4' | C3' | 101.3° | 105.0° |
| C4' | C5' | H16 | 111.8° | 110.4° |
| C4' | C5' | H17 | 111.8° | 110.5° |
| C5' | C4' | H18 | 106.0° | 110.3° |
| N01 | C06 | C08 | 124.2° | 119.6° |
| C06 | C08 | C4' | 109.3° | 109.4° |
| C06 | C08 | H19 | 109.5° | 109.5° |
| C06 | C08 | H20 | 109.5° | 109.5° |
| N1' | C2' | C3' | 102.9° | 104.6° |
| N1' | C2' | H12 | 111.1° | 110.4° |
| N1' | C2' | H13 | 111.1° | 110.5° |
| C2' | N1' | H14 | 108.8° | 111.0° |
| C10 | O09 | C3' | 112.9° | 114.1° |
| O09 | C10 | C11 | 111.8° | 109.4° |
| O09 | C10 | H9 | 108.9° | 109.5° |
| O09 | C10 | H10 | 108.9° | 109.4° |
| O09 | C3' | C4' | 113.0° | 110.4° |
| O09 | C3' | C2' | 110.9° | 110.3° |
| O09 | C3' | H11 | 111.6° | 110.2° |
| C08 | C4' | C3' | 118.3° | 110.3° |
| C08 | C4' | H18 | 106.0° | 110.4° |
| C4' | C08 | H19 | 109.5° | 109.5° |
| C4' | C08 | H20 | 109.5° | 109.5° |
| C4' | C3' | C2' | 100.2° | 105.1° |
| C4' | C3' | H11 | 110.4° | 110.4° |
| C3' | C4' | H18 | 106.1° | 110.4° |
| C10 | C11 | C12 | 114.5° | 109.4° |
| C10 | C11 | H7 | 108.2° | 109.5° |
| C10 | C11 | H8 | 108.2° | 109.5° |
| C11 | C10 | H9 | 108.9° | 109.5° |
| C11 | C10 | H10 | 108.9° | 109.5° |
| C2' | C3' | H11 | 110.2° | 110.3° |
| C3' | C2' | H12 | 111.1° | 110.4° |
| C3' | C2' | H13 | 111.1° | 110.4° |
| C11 | C12 | C13 | 120.2° | 120.0° |
| C11 | C12 | H6 | 119.9° | 120.0° |
| C12 | C11 | H7 | 108.2° | 109.5° |
| C12 | C11 | H8 | 108.2° | 109.5° |
| C12 | C13 | C21 | 123.0° | 120.1° |
| C12 | C13 | H5 | 118.5° | 120.0° |
| C13 | C12 | H6 | 119.9° | 120.0° |
| C13 | C21 | C26 | 118.6° | 120.2° |
| C13 | C21 | C22 | 122.3° | 120.1° |
| C21 | C13 | H5 | 118.5° | 120.0° |
| C26 | C21 | C22 | 119.1° | 119.8° |
| C21 | C26 | C25 | 121.3° | 119.9° |
| C21 | C26 | H3 | 119.4° | 120.0° |
| C21 | C22 | C23 | 120.0° | 119.8° |
| C21 | C22 | H4 | 120.0° | 120.1° |
| C26 | C25 | C24 | 119.5° | 120.2° |
| C26 | C25 | H2 | 120.2° | 119.9° |
| C25 | C26 | H3 | 119.3° | 120.0° |
| C22 | C23 | C24 | 120.4° | 120.1° |
| C22 | C23 | F23 | 119.2° | 120.0° |
| C23 | C22 | H4 | 120.0° | 120.0° |
| C25 | C24 | C23 | 119.7° | 120.2° |
| C25 | C24 | H1 | 120.1° | 119.9° |
| C24 | C25 | H2 | 120.3° | 119.9° |
| C24 | C23 | F23 | 120.4° | 120.0° |
| C23 | C24 | H1 | 120.1° | 119.9° |
| H7 | C11 | H8 | 109.5° | 109.5° |
| H9 | C10 | H10 | 109.5° | 109.5° |
| H12 | C2' | H13 | 109.4° | 110.4° |
| H16 | C5' | H17 | 109.5° | 110.4° |
| H19 | C08 | H20 | 109.5° | 109.5° |
| H21 | N02 | H22 | 109.4° | 120.0° |
| H25 | C07 | H26 | 109.5° | 109.5° |
| H25 | C07 | H27 | 109.5° | 109.5° |
| H26 | C07 | H27 | 109.4° | 109.4° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| C07 | C04 | C03 | C05 | 178.4° | 179.7° |
| C07 | C04 | C03 | C02 | 178.5° | 180.0° |
| C07 | C04 | C05 | C06 | 179.3° | 179.8° |
| C07 | C04 | C03 | H23 | 1.5° | 0.0° |
| C07 | C04 | C05 | H24 | 0.7° | 0.3° |
| C04 | C07 | H25 | H26 | 120.0° | 120.1° |
| C04 | C07 | H25 | H27 | 120.0° | 120.0° |
| C04 | C07 | H26 | H27 | 120.0° | 119.9° |
| C04 | C03 | C02 | H23 | 180.0° | 180.0° |
| C03 | C04 | C05 | C06 | 0.8° | 0.5° |
| C04 | C03 | C02 | N02 | 178.9° | 180.0° |
| C04 | C03 | C02 | N01 | 0.4° | 0.0° |
| C03 | C04 | C05 | H24 | 179.2° | 180.0° |
| C03 | C04 | C07 | H25 | 89.2° | 89.9° |
| C03 | C04 | C07 | H26 | 150.8° | 150.0° |
| C03 | C04 | C07 | H27 | 30.9° | 30.1° |
| C05 | C04 | C03 | C02 | 0.1° | 0.3° |
| C04 | C05 | C06 | H24 | 180.0° | 179.5° |
| C04 | C05 | C06 | N01 | 1.8° | 0.5° |
| C04 | C05 | C06 | C08 | 179.4° | 179.7° |
| C05 | C04 | C03 | H23 | 179.9° | 179.8° |
| C05 | C04 | C07 | H25 | 89.3° | 89.8° |
| C05 | C04 | C07 | H26 | 30.7° | 30.3° |
| C05 | C04 | C07 | H27 | 150.7° | 150.2° |
| C03 | C02 | N02 | N01 | 178.6° | 180.0° |
| C03 | C02 | N01 | C06 | 1.4° | 0.0° |
| C03 | C02 | N02 | H21 | 178.6° | 180.0° |
| C03 | C02 | N02 | H22 | 58.6° | 0.0° |
| C05 | C06 | N01 | C02 | 2.1° | 0.3° |
| C05 | C06 | N01 | C08 | 177.3° | 179.7° |
| C05 | C06 | C08 | C4' | 128.5° | 124.8° |
| C05 | C06 | C08 | H19 | 111.5° | 4.8° |
| C05 | C06 | C08 | H20 | 8.5° | 115.3° |
| N02 | C02 | N01 | C06 | 180.0° | 180.0° |
| C02 | N02 | H21 | H22 | 120.0° | 179.9° |
| N02 | C02 | C03 | H23 | 1.1° | 0.0° |
| C02 | N01 | C06 | C08 | 179.5° | 180.0° |
| N01 | C02 | N02 | H21 | 0.0° | 0.1° |
| N01 | C02 | N02 | H22 | 120.0° | 180.0° |
| N01 | C02 | C03 | H23 | 179.6° | 180.0° |
| N1' | C5' | C4' | H16 | 118.4° | 118.8° |
| N1' | C5' | C4' | H17 | 118.4° | 118.8° |
| C5' | N1' | C2' | H14 | 120.4° | 119.5° |
| N1' | C5' | C4' | C08 | 174.0° | 142.7° |
| N1' | C5' | C4' | C3' | 43.1° | 23.9° |
| C5' | N1' | C2' | C3' | 6.7° | 39.4° |
| C5' | N1' | C2' | H12 | 125.6° | 158.2° |
| C5' | N1' | C2' | H13 | 112.3° | 79.4° |
| N1' | C5' | H16 | H17 | 124.5° | 122.3° |
| N1' | C5' | C4' | H18 | 67.5° | 95.0° |
| C5' | C4' | C08 | C06 | 49.3° | 66.5° |
| C4' | C5' | N1' | C2' | 22.8° | 39.5° |
| C5' | C4' | C3' | O09 | 70.4° | 118.9° |
| C5' | C4' | C08 | C3' | 122.6° | 115.6° |
| C5' | C4' | C08 | H18 | 118.6° | 122.2° |
| C5' | C4' | C3' | H18 | 110.5° | 118.9° |
| C5' | C4' | C3' | C2' | 47.7° | 0.0° |
| C5' | C4' | C3' | H11 | 163.9° | 118.9° |
| C4' | C5' | N1' | H14 | 143.2° | 159.0° |
| C4' | C5' | H16 | H17 | 124.5° | 122.5° |
| C5' | C4' | C08 | H19 | 169.3° | 53.5° |
| C5' | C4' | C08 | H20 | 70.7° | 173.5° |
| N01 | C06 | C08 | C4' | 48.9° | 55.0° |
| N01 | C06 | C08 | H19 | 71.1° | 175.0° |
| N01 | C06 | C08 | H20 | 168.9° | 65.0° |
| N01 | C06 | C05 | H24 | 178.1° | 180.0° |
| C06 | C08 | C4' | H19 | 120.0° | 120.0° |
| C06 | C08 | C4' | H20 | 120.0° | 120.0° |
| C06 | C08 | C4' | C3' | 171.9° | 177.9° |
| C06 | C08 | C4' | H18 | 69.3° | 55.7° |
| C06 | C08 | H19 | H20 | 120.1° | 120.0° |
| C08 | C06 | C05 | H24 | 0.6° | 0.3° |
| N1' | C2' | C3' | O09 | 86.3° | 142.8° |
| N1' | C2' | C3' | C4' | 33.3° | 23.8° |
| N1' | C2' | C3' | H12 | 119.0° | 118.8° |
| N1' | C2' | C3' | H13 | 118.9° | 118.8° |
| N1' | C2' | C3' | H11 | 149.6° | 95.2° |
| N1' | C2' | H12 | H13 | 123.1° | 122.4° |
| C2' | N1' | C5' | H16 | 141.2° | 158.3° |
| C2' | N1' | C5' | H17 | 95.7° | 79.4° |
| C10 | O09 | C3' | C4' | 147.7° | 152.9° |
| O09 | C10 | C11 | H9 | 120.4° | 120.0° |
| O09 | C10 | C11 | H10 | 120.3° | 119.9° |
| C10 | O09 | C3' | C2' | 100.7° | 91.4° |
| O09 | C10 | C11 | C12 | 159.1° | 180.0° |
| O09 | C10 | C11 | H7 | 38.4° | 60.0° |
| O09 | C10 | C11 | H8 | 80.1° | 60.1° |
| O09 | C10 | H9 | H10 | 118.9° | 120.0° |
| C10 | O09 | C3' | H11 | 22.6° | 30.6° |
| O09 | C3' | C4' | C08 | 60.4° | 0.1° |
| O09 | C3' | C4' | C2' | 118.1° | 119.0° |
| O09 | C3' | C4' | H11 | 125.8° | 122.1° |
| C3' | O09 | C10 | C11 | 37.7° | 180.0° |
| O09 | C3' | C2' | H11 | 124.1° | 122.0° |
| C3' | O09 | C10 | H9 | 82.7° | 60.0° |
| C3' | O09 | C10 | H10 | 158.0° | 60.0° |
| O09 | C3' | C2' | H12 | 32.6° | 98.4° |
| O09 | C3' | C2' | H13 | 154.7° | 24.0° |
| O09 | C3' | C4' | H18 | 179.1° | 122.2° |
| C08 | C4' | C3' | H18 | 118.8° | 122.3° |
| C08 | C4' | C3' | C2' | 178.4° | 118.9° |
| C08 | C4' | C3' | H11 | 65.4° | 122.2° |
| C08 | C4' | C5' | H16 | 67.6° | 98.5° |
| C08 | C4' | C5' | H17 | 55.6° | 23.9° |
| C4' | C08 | H19 | H20 | 120.0° | 120.0° |
| C4' | C3' | C2' | H11 | 116.3° | 119.0° |
| C4' | C3' | C2' | H12 | 152.3° | 142.6° |
| C4' | C3' | C2' | H13 | 85.6° | 95.0° |
| C3' | C4' | C5' | H16 | 161.5° | 142.7° |
| C3' | C4' | C5' | H17 | 75.3° | 94.9° |
| C3' | C4' | C08 | H19 | 68.1° | 62.1° |
| C3' | C4' | C08 | H20 | 52.0° | 58.0° |
| C10 | C11 | C12 | H7 | 120.7° | 120.0° |
| C10 | C11 | C12 | H8 | 120.7° | 120.0° |
| C10 | C11 | C12 | C13 | 54.7° | 125.0° |
| C10 | C11 | C12 | H6 | 125.3° | 55.0° |
| C10 | C11 | H7 | H8 | 117.7° | 120.0° |
| C11 | C10 | H9 | H10 | 118.9° | 120.1° |
| C3' | C2' | H12 | H13 | 123.1° | 122.4° |
| C3' | C2' | N1' | H14 | 113.8° | 159.0° |
| C2' | C3' | C4' | H18 | 62.8° | 118.9° |
| C11 | C12 | C13 | H6 | 180.0° | 180.0° |
| C11 | C12 | C13 | C21 | 165.1° | 180.0° |
| C11 | C12 | C13 | H5 | 14.9° | 0.0° |
| C12 | C11 | H7 | H8 | 117.7° | 120.0° |
| C12 | C11 | C10 | H9 | 80.5° | 60.0° |
| C12 | C11 | C10 | H10 | 38.8° | 60.1° |
| C12 | C13 | C21 | H5 | 180.0° | 180.0° |
| C12 | C13 | C21 | C26 | 169.1° | 180.0° |
| C12 | C13 | C21 | C22 | 12.2° | 0.3° |
| C13 | C12 | C11 | H7 | 175.4° | 115.0° |
| C13 | C12 | C11 | H8 | 66.0° | 5.0° |
| C13 | C21 | C26 | C22 | 178.8° | 179.7° |
| C13 | C21 | C26 | C25 | 179.1° | 180.0° |
| C13 | C21 | C22 | C23 | 179.2° | 179.8° |
| C13 | C21 | C26 | H3 | 0.9° | 0.1° |
| C13 | C21 | C22 | H4 | 0.9° | 0.3° |
| C21 | C13 | C12 | H6 | 14.9° | 0.0° |
| C21 | C26 | C25 | H3 | 180.0° | 179.9° |
| C26 | C21 | C22 | C23 | 0.4° | 0.5° |
| C21 | C26 | C25 | C24 | 0.1° | 0.1° |
| C21 | C26 | C25 | H2 | 179.9° | 179.9° |
| C26 | C21 | C22 | H4 | 179.6° | 179.9° |
| C26 | C21 | C13 | H5 | 10.9° | 0.1° |
| C22 | C21 | C26 | C25 | 0.3° | 0.3° |
| C21 | C22 | C23 | H4 | 180.0° | 179.5° |
| C21 | C22 | C23 | C24 | 0.3° | 0.5° |
| C21 | C22 | C23 | F23 | 179.9° | 179.8° |
| C22 | C21 | C26 | H3 | 179.6° | 179.8° |
| C22 | C21 | C13 | H5 | 167.8° | 179.8° |
| C26 | C25 | C24 | H2 | 180.0° | 180.0° |
| C26 | C25 | C24 | C23 | 0.0° | 0.1° |
| C26 | C25 | C24 | H1 | 180.0° | 180.0° |
| C22 | C23 | C24 | C25 | 0.1° | 0.3° |
| C22 | C23 | C24 | F23 | 179.8° | 179.7° |
| C22 | C23 | C24 | H1 | 179.9° | 179.8° |
| C25 | C24 | C23 | H1 | 180.0° | 180.0° |
| C25 | C24 | C23 | F23 | 179.9° | 180.0° |
| C24 | C25 | C26 | H3 | 179.9° | 180.0° |
| C23 | C24 | C25 | H2 | 180.0° | 180.0° |
| C24 | C23 | C22 | H4 | 179.7° | 180.0° |
| F23 | C23 | C24 | H1 | 0.1° | 0.0° |
| F23 | C23 | C22 | H4 | 0.1° | 0.2° |
| H1 | C24 | C25 | H2 | 0.0° | 0.0° |
| H2 | C25 | C26 | H3 | 0.1° | 0.1° |
| H5 | C13 | C12 | H6 | 165.1° | 180.0° |
| H6 | C12 | C11 | H7 | 4.6° | 65.0° |
| H6 | C12 | C11 | H8 | 114.0° | 175.0° |
| H7 | C11 | C10 | H9 | 158.8° | NaN° |
| H7 | C11 | C10 | H10 | 81.9° | 59.9° |
| H8 | C11 | C10 | H9 | 40.2° | 59.9° |
| H8 | C11 | C10 | H10 | 159.5° | 180.0° |
| H11 | C3' | C2' | H12 | 91.4° | 23.6° |
| H11 | C3' | C2' | H13 | 30.7° | 146.0° |
| H11 | C3' | C4' | H18 | 53.4° | 0.1° |
| H12 | C2' | N1' | H14 | 5.2° | 82.2° |
| H13 | C2' | N1' | H14 | 127.3° | 40.2° |
| H14 | N1' | C5' | H16 | 98.4° | 82.2° |
| H14 | N1' | C5' | H17 | 24.7° | 40.2° |
| H16 | C5' | C4' | H18 | 50.9° | 23.7° |
| H17 | C5' | C4' | H18 | 174.1° | 146.2° |
| H18 | C4' | C08 | H19 | 50.7° | 175.7° |
| H18 | C4' | C08 | H20 | 170.8° | 64.3° |
| H25 | C07 | H26 | H27 | 120.0° | 120.0° |
