H5V
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O3 | C11 | sing | 1.43Å | 1.43Å | |
| O2 | C9 | sing | 1.43Å | 1.44Å | |
| C11 | C9 | sing | 1.55Å | 1.54Å | |
| C11 | C12 | sing | 1.54Å | 1.57Å | |
| C13 | C9 | sing | 1.53Å | 1.52Å | |
| C9 | C10 | sing | 1.54Å | 1.54Å | |
| C14 | C12 | sing | 1.53Å | 1.51Å | |
| C14 | O4 | sing | 1.43Å | 1.42Å | |
| C12 | O1 | sing | 1.44Å | 1.46Å | |
| C10 | O1 | sing | 1.44Å | 1.40Å | |
| C10 | N5 | sing | 1.46Å | 1.45Å | |
| N5 | C16 | sing | 1.37Å | 1.39Å | Aromatic |
| N5 | C15 | sing | 1.37Å | 1.38Å | Aromatic |
| C16 | C18 | doub | 1.34Å | 1.35Å | Aromatic |
| N6 | C15 | doub | 1.33Å | 1.34Å | Aromatic |
| N6 | C20 | sing | 1.32Å | 1.34Å | Aromatic |
| C15 | C17 | sing | 1.41Å | 1.40Å | Aromatic |
| C18 | C17 | sing | 1.46Å | 1.43Å | Aromatic |
| C17 | C19 | doub | 1.40Å | 1.41Å | Aromatic |
| C20 | N7 | doub | 1.32Å | 1.34Å | Aromatic |
| C19 | N7 | sing | 1.33Å | 1.35Å | Aromatic |
| C19 | N8 | sing | 1.38Å | 1.34Å | |
| O3 | HO3 | sing | 0.97Å | 0.95Å | |
| O4 | HO4 | sing | 0.97Å | 0.95Å | |
| C10 | HC10 | sing | 1.09Å | 1.10Å | |
| C11 | HC11 | sing | 1.09Å | 1.10Å | |
| C12 | HC12 | sing | 1.09Å | 1.10Å | |
| C13 | H13A | sing | 1.09Å | 1.10Å | |
| C13 | H13C | sing | 1.09Å | 1.10Å | |
| C13 | H13B | sing | 1.09Å | 1.10Å | |
| C14 | H14A | sing | 1.09Å | 1.10Å | |
| C14 | H14B | sing | 1.09Å | 1.10Å | |
| O2 | HO2 | sing | 0.97Å | 0.95Å | |
| N8 | HN8A | sing | 0.97Å | 1.00Å | |
| N8 | HN8B | sing | 0.97Å | 1.00Å | |
| C16 | HC16 | sing | 1.08Å | 1.08Å | |
| C18 | HC18 | sing | 1.08Å | 1.08Å | |
| C20 | HC20 | sing | 1.08Å | 1.08Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O3 | C11 | C9 | 112.8° | 110.5° |
| O3 | C11 | C12 | 111.5° | 110.5° |
| C11 | O3 | HO3 | 109.5° | 114.0° |
| O3 | C11 | HC11 | 110.7° | 110.4° |
| O2 | C9 | C11 | 111.3° | 110.5° |
| O2 | C9 | C13 | 111.7° | 110.5° |
| O2 | C9 | C10 | 104.7° | 110.5° |
| C9 | O2 | HO2 | 109.5° | 114.0° |
| C9 | C11 | C12 | 103.5° | 104.0° |
| C11 | C9 | C13 | 113.2° | 110.5° |
| C11 | C9 | C10 | 98.3° | 104.1° |
| C9 | C11 | HC11 | 109.3° | 110.5° |
| C11 | C12 | C14 | 116.1° | 110.3° |
| C11 | C12 | O1 | 105.0° | 104.8° |
| C12 | C11 | HC11 | 108.8° | 110.7° |
| C11 | C12 | HC12 | 108.0° | 110.4° |
| C13 | C9 | C10 | 116.8° | 110.5° |
| C9 | C13 | H13A | 109.5° | 109.5° |
| C9 | C13 | H13C | 109.4° | 109.6° |
| C9 | C13 | H13B | 109.4° | 109.4° |
| C9 | C10 | O1 | 105.3° | 104.8° |
| C9 | C10 | N5 | 120.7° | 110.4° |
| C9 | C10 | HC10 | 106.2° | 110.4° |
| C12 | C14 | O4 | 110.0° | 109.5° |
| C14 | C12 | O1 | 109.3° | 110.4° |
| C14 | C12 | HC12 | 108.8° | 110.4° |
| C12 | C14 | H14A | 109.4° | 109.4° |
| C12 | C14 | H14B | 109.4° | 109.5° |
| C14 | O4 | HO4 | 109.5° | 114.1° |
| O4 | C14 | H14A | 109.3° | 109.5° |
| O4 | C14 | H14B | 109.3° | 109.5° |
| C12 | O1 | C10 | 108.1° | 105.3° |
| O1 | C12 | HC12 | 109.5° | 110.4° |
| O1 | C10 | N5 | 108.8° | 110.4° |
| O1 | C10 | HC10 | 108.0° | 110.4° |
| C10 | N5 | C16 | 126.0° | 125.0° |
| C10 | N5 | C15 | 126.1° | 125.0° |
| N5 | C10 | HC10 | 107.3° | 110.4° |
| C16 | N5 | C15 | 107.8° | 110.0° |
| N5 | C16 | C18 | 110.3° | 109.8° |
| N5 | C16 | HC16 | 124.9° | 125.0° |
| N5 | C15 | N6 | 126.3° | 134.3° |
| N5 | C15 | C17 | 107.9° | 107.2° |
| C16 | C18 | C17 | 106.9° | 106.8° |
| C18 | C16 | HC16 | 124.8° | 125.1° |
| C16 | C18 | HC18 | 126.6° | 126.6° |
| C15 | N6 | C20 | 112.3° | 120.7° |
| N6 | C15 | C17 | 125.7° | 118.5° |
| N6 | C20 | N7 | 128.5° | 122.7° |
| N6 | C20 | HC20 | 115.8° | 118.6° |
| C15 | C17 | C18 | 107.1° | 106.2° |
| C15 | C17 | C19 | 116.0° | 118.7° |
| C18 | C17 | C19 | 136.8° | 135.1° |
| C17 | C18 | HC18 | 126.6° | 126.6° |
| C17 | C19 | N7 | 119.1° | 118.3° |
| C17 | C19 | N8 | 122.3° | 120.9° |
| C20 | N7 | C19 | 118.4° | 121.1° |
| N7 | C20 | HC20 | 115.8° | 118.7° |
| N7 | C19 | N8 | 118.4° | 120.9° |
| C19 | N8 | HN8A | 109.5° | 120.0° |
| C19 | N8 | HN8B | 109.5° | 120.0° |
| H13A | C13 | H13C | 109.5° | 109.5° |
| H13A | C13 | H13B | 109.5° | 109.4° |
| H13C | C13 | H13B | 109.5° | 109.4° |
| H14A | C14 | H14B | 109.5° | 109.5° |
| HN8A | N8 | HN8B | 109.4° | 119.9° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O3 | C11 | C9 | O2 | 23.6° | 0.0° |
| O3 | C11 | C9 | C12 | 120.6° | 118.6° |
| O3 | C11 | C9 | HC11 | 123.6° | 122.5° |
| O3 | C11 | C12 | HC11 | 122.4° | 122.7° |
| O3 | C11 | C9 | C13 | 150.3° | 122.7° |
| O3 | C11 | C9 | C10 | 85.8° | 118.7° |
| O3 | C11 | C12 | C14 | 133.2° | 98.5° |
| O3 | C11 | C12 | O1 | 106.0° | 142.6° |
| O3 | C11 | C12 | HC12 | 10.8° | 23.7° |
| O2 | C9 | C11 | C13 | 126.7° | 122.7° |
| O2 | C9 | C11 | C10 | 109.4° | 118.7° |
| O2 | C9 | C11 | C12 | 144.2° | 118.6° |
| O2 | C9 | C13 | C10 | 120.5° | 122.7° |
| O2 | C9 | C10 | O1 | 159.5° | 142.6° |
| O2 | C9 | C10 | N5 | 77.0° | 98.5° |
| O2 | C9 | C10 | HC10 | 45.2° | 23.8° |
| O2 | C9 | C11 | HC11 | 100.0° | 122.5° |
| O2 | C9 | C13 | H13A | 180.0° | 177.4° |
| O2 | C9 | C13 | H13C | 60.0° | 57.3° |
| O2 | C9 | C13 | H13B | 60.0° | 62.7° |
| C9 | C11 | C12 | HC11 | 116.1° | 118.7° |
| C11 | C9 | C13 | C10 | 113.0° | 114.7° |
| C9 | C11 | C12 | C14 | 105.3° | 142.8° |
| C9 | C11 | C12 | O1 | 15.5° | 24.0° |
| C11 | C9 | C10 | O1 | 44.9° | 24.0° |
| C11 | C9 | C10 | N5 | 168.3° | 142.8° |
| C9 | C11 | O3 | HO3 | 180.0° | 180.0° |
| C11 | C9 | C10 | HC10 | 69.5° | 94.9° |
| C9 | C11 | C12 | HC12 | 132.2° | 94.9° |
| C11 | C9 | C13 | H13A | 53.5° | 54.7° |
| C11 | C9 | C13 | H13C | 66.5° | 65.4° |
| C11 | C9 | C13 | H13B | 173.5° | 174.6° |
| C11 | C9 | O2 | HO2 | 180.0° | 65.3° |
| C12 | C11 | C9 | C13 | 89.1° | 118.7° |
| C12 | C11 | C9 | C10 | 34.8° | 0.0° |
| C11 | C12 | C14 | O1 | 118.5° | 115.4° |
| C11 | C12 | C14 | HC12 | 122.0° | 122.3° |
| C11 | C12 | C14 | O4 | 178.2° | 175.0° |
| C11 | C12 | O1 | HC12 | 115.7° | 118.9° |
| C11 | C12 | O1 | C10 | 13.2° | 40.6° |
| C12 | C11 | O3 | HO3 | 64.1° | 65.4° |
| C11 | C12 | C14 | H14A | 58.1° | 65.0° |
| C11 | C12 | C14 | H14B | 61.7° | 55.0° |
| C13 | C9 | C10 | O1 | 76.4° | 94.7° |
| C13 | C9 | C10 | N5 | 47.1° | 24.2° |
| C13 | C9 | C10 | HC10 | 169.2° | 146.5° |
| C13 | C9 | C11 | HC11 | 26.7° | 0.1° |
| C9 | C13 | H13A | H13C | 120.0° | 120.1° |
| C9 | C13 | H13A | H13B | 120.0° | 119.9° |
| C9 | C13 | H13C | H13B | 120.0° | 120.0° |
| C13 | C9 | O2 | HO2 | 52.5° | 57.3° |
| C9 | C10 | O1 | C12 | 37.2° | 40.5° |
| C9 | C10 | O1 | N5 | 130.7° | 118.8° |
| C9 | C10 | O1 | HC10 | 113.2° | 118.9° |
| C9 | C10 | N5 | HC10 | 121.7° | 122.3° |
| C9 | C10 | N5 | C16 | 60.3° | 95.0° |
| C9 | C10 | N5 | C15 | 117.1° | 85.0° |
| C10 | C9 | C11 | HC11 | 150.6° | 118.8° |
| C10 | C9 | C13 | H13A | 59.5° | 59.9° |
| C10 | C9 | C13 | H13C | 179.5° | 180.0° |
| C10 | C9 | C13 | H13B | 60.5° | 60.0° |
| C10 | C9 | O2 | HO2 | 74.8° | 180.0° |
| C12 | C14 | O4 | H14A | 120.1° | 119.9° |
| C12 | C14 | O4 | H14B | 120.1° | 120.0° |
| C14 | C12 | O1 | HC12 | 119.1° | 122.3° |
| C14 | C12 | O1 | C10 | 138.5° | 159.4° |
| C12 | C14 | O4 | HO4 | 180.0° | 180.0° |
| C14 | C12 | C11 | HC11 | 10.8° | 24.1° |
| C12 | C14 | H14A | H14B | 119.8° | 120.0° |
| O4 | C14 | C12 | O1 | 63.3° | 69.6° |
| O4 | C14 | C12 | HC12 | 56.2° | 52.7° |
| O4 | C14 | H14A | H14B | 119.7° | 120.0° |
| C12 | O1 | C10 | N5 | 167.9° | 159.4° |
| C12 | O1 | C10 | HC10 | 75.9° | 78.3° |
| O1 | C12 | C11 | HC11 | 131.6° | 94.7° |
| O1 | C12 | C14 | H14A | 176.6° | 50.4° |
| O1 | C12 | C14 | H14B | 56.8° | 170.3° |
| O1 | C10 | N5 | HC10 | 116.6° | 122.3° |
| O1 | C10 | N5 | C16 | 61.4° | 20.3° |
| O1 | C10 | N5 | C15 | 121.2° | 159.7° |
| C10 | O1 | C12 | HC12 | 102.5° | 78.3° |
| C10 | N5 | C16 | C15 | 177.8° | 180.0° |
| C10 | N5 | C16 | C18 | 177.0° | 180.0° |
| C10 | N5 | C15 | N6 | 1.1° | 0.3° |
| C10 | N5 | C15 | C17 | 176.4° | 180.0° |
| C10 | N5 | C16 | HC16 | 3.0° | 0.0° |
| N5 | C16 | C18 | HC16 | 180.0° | 179.9° |
| C16 | N5 | C15 | N6 | 178.9° | 179.7° |
| C16 | N5 | C15 | C17 | 1.4° | 0.0° |
| N5 | C16 | C18 | C17 | 0.2° | 0.1° |
| C16 | N5 | C10 | HC10 | 178.0° | 142.6° |
| N5 | C16 | C18 | HC18 | 179.8° | 180.0° |
| C15 | N5 | C16 | C18 | 0.8° | 0.0° |
| N5 | C15 | N6 | C17 | 177.0° | 179.7° |
| N5 | C15 | N6 | C20 | 175.3° | 179.7° |
| N5 | C15 | C17 | C18 | 1.5° | 0.0° |
| N5 | C15 | C17 | C19 | 175.6° | 180.0° |
| C15 | N5 | C10 | HC10 | 4.6° | 37.4° |
| C15 | N5 | C16 | HC16 | 179.2° | 180.0° |
| C16 | C18 | C17 | C15 | 1.0° | 0.1° |
| C16 | C18 | C17 | HC18 | 180.0° | 179.9° |
| C16 | C18 | C17 | C19 | 175.2° | 180.0° |
| N6 | C15 | C17 | C18 | 179.0° | 179.8° |
| N6 | C15 | C17 | C19 | 1.9° | 0.2° |
| C15 | N6 | C20 | N7 | 1.9° | 0.5° |
| C15 | N6 | C20 | HC20 | 178.1° | 180.0° |
| C20 | N6 | C15 | C17 | 1.7° | 0.0° |
| N6 | C20 | N7 | HC20 | 180.0° | 179.5° |
| N6 | C20 | N7 | C19 | 2.2° | 0.7° |
| C15 | C17 | C18 | C19 | 176.2° | 179.9° |
| C15 | C17 | C19 | N7 | 2.0° | 0.0° |
| C15 | C17 | C19 | N8 | 172.5° | 180.0° |
| C15 | C17 | C18 | HC18 | 179.0° | 180.0° |
| C18 | C17 | C19 | N7 | 177.9° | 179.9° |
| C18 | C17 | C19 | N8 | 3.4° | 0.0° |
| C17 | C18 | C16 | HC16 | 179.9° | 180.0° |
| C17 | C19 | N7 | C20 | 2.1° | 0.4° |
| C17 | C19 | N7 | N8 | 174.7° | 180.0° |
| C17 | C19 | N8 | HN8A | 174.5° | 0.1° |
| C17 | C19 | N8 | HN8B | 65.5° | 180.0° |
| C19 | C17 | C18 | HC18 | 4.8° | 0.1° |
| C20 | N7 | C19 | N8 | 172.6° | 179.6° |
| N7 | C19 | N8 | HN8A | 0.0° | 180.0° |
| N7 | C19 | N8 | HN8B | 120.0° | 0.0° |
| C19 | N7 | C20 | HC20 | 177.8° | 179.8° |
| C19 | N8 | HN8A | HN8B | 120.0° | 179.9° |
| HO3 | O3 | C11 | HC11 | 57.2° | 57.5° |
| HO4 | O4 | C14 | H14A | 59.9° | 60.1° |
| HO4 | O4 | C14 | H14B | 59.9° | 60.0° |
| HC11 | C11 | C12 | HC12 | 111.6° | 146.4° |
| HC12 | C12 | C14 | H14A | 63.9° | 172.7° |
| HC12 | C12 | C14 | H14B | 176.2° | 67.3° |
| H13A | C13 | H13C | H13B | 120.0° | 119.9° |
| HC16 | C16 | C18 | HC18 | 0.1° | 0.1° |
