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H5P

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C2O2doub1.21Å1.23Å
C2N3sing1.35Å1.39Å
C2C1'sing1.50Å1.54Å
N3C4sing1.34Å1.38Å
N3HN3sing0.97Å1.02Å
C4O4doub1.22Å1.23Å
C4N5sing1.35Å1.41Å
N5C1'sing1.46Å1.40Å
N5HN5sing0.97Å1.02Å
C1'C2'sing1.53Å1.49Å
C1'O4'sing1.43Å1.44Å
C2'O2'sing1.43Å1.41Å
C2'C3'sing1.55Å1.52Å
C2'H2'sing1.09Å1.12Å
O2'HO2'sing0.97Å0.95Å
C3'O3'sing1.43Å1.45Å
C3'C4'sing1.54Å1.54Å
C3'H3'sing1.09Å1.12Å
O3'HO3'sing0.97Å0.95Å
C4'O4'sing1.45Å1.41Å
C4'C5'sing1.53Å1.52Å
C4'H4'sing1.09Å1.11Å
C5'O5'sing1.43Å1.49Å
C5'H5'1sing1.09Å1.12Å
C5'H5'2sing1.09Å1.12Å
O5'Psing1.61Å1.62Å
PO1Pdoub1.48Å1.46Å
PO2Psing1.61Å1.48Å
PO3Psing1.61Å1.49Å
O2PHOP2sing0.97Å0.95Å
O3PHOP3sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O2C2N3129.4°127.4°
O2C2C1'123.0°127.4°
N3C2C1'106.9°105.2°
C2N3C4111.4°111.6°
C2N3HN3124.4°124.2°
C2C1'N5101.8°104.7°
C2C1'C2'110.6°111.3°
C2C1'O4'111.1°111.6°
C4N3HN3124.2°124.2°
N3C4O4125.7°123.9°
N3C4N5106.1°112.4°
O4C4N5128.2°123.8°
C4N5C1'113.7°106.1°
C4N5HN5123.4°127.0°
C1'N5HN5122.9°126.9°
N5C1'C2'114.3°111.5°
N5C1'O4'112.7°111.8°
C2'C1'O4'106.4°106.2°
C1'C2'O2'109.6°110.7°
C1'C2'C3'106.1°103.8°
C1'C2'H2'113.8°110.6°
C1'O4'C4'109.9°105.3°
O2'C2'C3'115.0°110.5°
O2'C2'H2'104.6°110.5°
C2'O2'HO2'109.5°106.8°
C3'C2'H2'108.1°110.6°
C2'C3'O3'113.5°110.6°
C2'C3'C4'99.7°104.2°
C2'C3'H3'115.1°110.5°
O3'C3'C4'114.2°110.6°
O3'C3'H3'100.8°110.4°
C3'O3'HO3'113.5°106.9°
C4'C3'H3'114.3°110.5°
C3'C4'O4'106.0°105.0°
C3'C4'C5'112.3°110.6°
C3'C4'H4'111.5°110.2°
O4'C4'C5'113.6°110.3°
O4'C4'H4'110.1°110.3°
C5'C4'H4'103.5°110.3°
C4'C5'O5'114.9°109.5°
C4'C5'H5'1110.2°109.5°
C4'C5'H5'2110.2°109.5°
O5'C5'H5'1110.3°109.4°
O5'C5'H5'2110.3°109.5°
C5'O5'P122.7°106.8°
H5'1C5'H5'2100.0°109.5°
O5'PO1P99.4°109.5°
O5'PO2P104.9°109.5°
O5'PO3P104.0°109.5°
O1PPO2P111.5°109.5°
O1PPO3P110.0°109.5°
O2PPO3P123.7°109.5°
PO2PHOP2104.8°106.8°
PO3PHOP3104.1°106.8°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O2C2N3C1'171.2°180.0°
O2C2N3C4169.7°180.0°
O2C2N3HN310.3°0.1°
O2C2C1'N5170.7°180.0°
O2C2C1'C2'67.5°59.4°
O2C2C1'O4'50.5°59.0°
C2N3C4HN3180.0°179.9°
C2N3C4O4177.7°179.9°
C2N3C4N51.2°0.1°
N3C2C1'N51.2°0.0°
N3C2C1'C2'120.6°120.6°
N3C2C1'O4'121.5°121.0°
C1'C2N3C41.5°0.0°
C1'C2N3HN3178.5°179.9°
C2C1'N5C40.5°0.1°
C2C1'N5C2'119.3°120.5°
C2C1'N5O4'119.1°120.9°
C2C1'N5HN5179.5°180.0°
C2C1'C2'O4'120.8°121.6°
C2C1'C2'O2'20.2°19.8°
C2C1'C2'C3'104.4°98.8°
C2C1'C2'H2'136.9°142.7°
C2C1'O4'C4'126.7°82.5°
N3C4O4N5178.7°179.8°
N3C4N5C1'0.4°0.1°
N3C4N5HN5179.6°180.0°
HN3N3C4O42.3°0.1°
HN3N3C4N5178.8°180.0°
O4C4N5C1'178.5°180.0°
O4C4N5HN51.5°0.2°
C4N5C1'HN5180.0°179.9°
C4N5C1'C2'118.7°120.5°
C4N5C1'O4'119.6°120.8°
N5C1'C2'O4'125.1°121.9°
N5C1'C2'O2'93.9°96.7°
N5C1'C2'C3'141.4°144.8°
N5C1'C2'H2'22.7°26.2°
N5C1'O4'C4'119.7°160.7°
HN5N5C1'C2'61.3°59.6°
HN5N5C1'O4'60.4°59.0°
C1'C2'O2'C3'119.3°114.4°
C1'C2'O2'H2'122.3°122.9°
C1'C2'C3'H2'122.4°118.6°
C1'C2'O2'HO2'180.0°175.9°
C1'C2'C3'O3'91.8°119.4°
C1'C2'C3'C4'30.0°0.5°
C1'C2'C3'H3'152.8°118.1°
C2'C1'O4'C4'6.3°38.9°
O4'C1'C2'O2'141.0°141.4°
O4'C1'C2'C3'16.4°22.8°
O4'C1'C2'H2'102.4°95.7°
C1'O4'C4'C3'26.2°38.9°
C1'O4'C4'C5'97.6°158.1°
C1'O4'C4'H4'146.9°79.8°
O2'C2'C3'H2'116.4°122.7°
O2'C2'C3'O3'29.4°0.7°
O2'C2'C3'C4'151.2°118.1°
O2'C2'C3'H3'86.0°123.2°
C3'C2'O2'HO2'60.7°61.5°
C2'C3'O3'C4'113.3°114.8°
C2'C3'O3'H3'123.6°122.6°
C2'C3'C4'H3'123.3°118.7°
C2'C3'O3'HO3'180.0°178.1°
C2'C3'C4'O4'34.2°23.4°
C2'C3'C4'C5'90.4°142.4°
C2'C3'C4'H4'154.0°95.3°
H2'C2'O2'HO2'57.7°61.2°
H2'C2'C3'O3'145.8°122.0°
H2'C2'C3'C4'92.4°119.1°
H2'C2'C3'H3'30.4°0.5°
O3'C3'C4'H3'115.4°122.5°
O3'C3'C4'O4'87.1°142.2°
O3'C3'C4'C5'148.3°98.8°
O3'C3'C4'H4'32.7°23.5°
C4'C3'O3'HO3'66.7°63.2°
C3'C4'O4'C5'123.7°119.2°
C3'C4'O4'H4'120.7°118.7°
C3'C4'C5'H4'120.4°122.2°
C3'C4'C5'O5'46.3°177.1°
C3'C4'C5'H5'179.0°62.9°
C3'C4'C5'H5'2171.5°57.1°
H3'C3'O3'HO3'56.4°59.3°
H3'C3'C4'O4'157.5°95.3°
H3'C3'C4'C5'32.9°23.7°
H3'C3'C4'H4'82.7°146.0°
O4'C4'C5'H4'119.4°122.1°
O4'C4'C5'O5'73.9°61.4°
O4'C4'C5'H5'1160.8°178.6°
O4'C4'C5'H5'251.3°58.6°
C4'C5'O5'H5'1125.3°120.0°
C4'C5'O5'H5'2125.3°120.0°
C4'C5'H5'1H5'2116.0°120.0°
C4'C5'O5'P123.4°180.0°
H4'C4'C5'O5'166.7°60.7°
H4'C4'C5'H5'141.4°59.3°
H4'C4'C5'H5'268.1°179.3°
O5'C5'H5'1H5'2116.1°119.9°
C5'O5'PO1P166.1°60.0°
C5'O5'PO2P78.6°180.0°
C5'O5'PO3P52.6°60.0°
H5'1C5'O5'P111.3°60.0°
H5'2C5'O5'P1.8°59.9°
O5'PO1PO2P110.2°120.0°
O5'PO1PO3P108.8°120.0°
O5'PO2PO3P118.6°120.0°
O5'PO2PHOP2180.0°180.0°
O5'PO3PHOP3180.0°60.0°
O1PPO2PO3P134.7°120.0°
O1PPO2PHOP273.4°60.0°
O1PPO3PHOP374.3°180.0°
O2PPO3PHOP361.0°60.0°
O3PPO2PHOP261.4°60.0°

217705

PDB entries from 2024-03-27

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