H5M
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N | CA | sing | 1.49Å | 1.48Å | |
| N | CD | sing | 1.48Å | 1.47Å | |
| N | H | sing | 1.01Å | 1.02Å | |
| CA | C | sing | 1.51Å | 1.53Å | |
| CA | CB | sing | 1.55Å | 1.55Å | |
| CA | HA | sing | 1.09Å | 1.12Å | |
| C | O | doub | 1.21Å | 1.23Å | |
| C | OXT | sing | 1.34Å | 1.35Å | |
| OXT | HXT | sing | 0.97Å | 0.95Å | |
| CB | CG | sing | 1.55Å | 1.53Å | |
| CB | OB | sing | 1.43Å | 1.41Å | |
| CB | HB | sing | 1.09Å | 1.11Å | |
| CG | CD | sing | 1.54Å | 1.54Å | |
| CG | HG2 | sing | 1.09Å | 1.11Å | |
| CG | HG3 | sing | 1.09Å | 1.12Å | |
| CD | CD1 | sing | 1.53Å | 1.52Å | |
| CD | HD | sing | 1.09Å | 1.12Å | |
| OB | HOB | sing | 0.97Å | 0.95Å | |
| CD1 | HD11 | sing | 1.09Å | 1.12Å | |
| CD1 | HD12 | sing | 1.09Å | 1.12Å | |
| CD1 | HD13 | sing | 1.09Å | 1.11Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CA | N | CD | 112.4° | 105.7° |
| CA | N | H | 111.2° | 106.7° |
| N | CA | C | 113.1° | 110.8° |
| N | CA | CB | 103.7° | 103.4° |
| N | CA | HA | 110.8° | 110.5° |
| CD | N | H | 111.1° | 107.0° |
| N | CD | CG | 103.6° | 107.2° |
| N | CD | CD1 | 112.0° | 109.9° |
| N | CD | HD | 113.0° | 109.9° |
| C | CA | CB | 108.9° | 110.7° |
| C | CA | HA | 105.7° | 110.5° |
| CA | C | O | 119.7° | 120.0° |
| CA | C | OXT | 118.0° | 120.0° |
| CB | CA | HA | 114.8° | 110.7° |
| CA | CB | CG | 102.7° | 102.9° |
| CA | CB | OB | 111.6° | 110.9° |
| CA | CB | HB | 114.2° | 110.8° |
| O | C | OXT | 122.1° | 120.0° |
| C | OXT | HXT | 118.0° | 120.0° |
| CG | CB | OB | 114.2° | 110.7° |
| CG | CB | HB | 111.6° | 110.6° |
| CB | CG | CD | 106.0° | 105.2° |
| CB | CG | HG2 | 113.5° | 110.4° |
| CB | CG | HG3 | 113.5° | 110.3° |
| OB | CB | HB | 102.7° | 110.7° |
| CB | OB | HOB | 111.7° | 106.9° |
| CD | CG | HG2 | 113.5° | 110.3° |
| CD | CG | HG3 | 113.5° | 110.2° |
| CG | CD | CD1 | 113.2° | 110.0° |
| CG | CD | HD | 111.8° | 109.9° |
| HG2 | CG | HG3 | 97.0° | 110.3° |
| CD1 | CD | HD | 103.5° | 109.9° |
| CD | CD1 | HD11 | 112.0° | 109.5° |
| CD | CD1 | HD12 | 111.3° | 109.4° |
| CD | CD1 | HD13 | 111.3° | 109.5° |
| HD11 | CD1 | HD12 | 111.3° | 109.4° |
| HD11 | CD1 | HD13 | 111.3° | 109.5° |
| HD12 | CD1 | HD13 | 99.1° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CA | N | CD | H | 125.3° | 113.5° |
| N | CA | C | CB | 114.7° | 114.1° |
| N | CA | C | HA | 121.4° | 122.9° |
| N | CA | CB | HA | 121.0° | 118.3° |
| N | CA | C | O | 31.2° | 24.1° |
| N | CA | C | OXT | 154.4° | 156.0° |
| N | CA | CB | CG | 30.1° | 37.3° |
| N | CA | CB | OB | 92.7° | 155.7° |
| N | CA | CB | HB | 151.2° | 81.0° |
| CA | N | CD | CG | 4.9° | 25.0° |
| CA | N | CD | CD1 | 127.2° | 144.6° |
| CA | N | CD | HD | 116.4° | 94.3° |
| CD | N | CA | C | 101.8° | 157.6° |
| CD | N | CA | CB | 16.1° | 39.0° |
| CD | N | CA | HA | 139.7° | 79.5° |
| N | CD | CG | CB | 24.5° | 1.1° |
| N | CD | CG | CD1 | 121.5° | 119.5° |
| N | CD | CG | HD | 122.1° | 119.4° |
| N | CD | CG | HG2 | 100.8° | 120.1° |
| N | CD | CG | HG3 | 149.7° | 117.8° |
| N | CD | CD1 | HD | 122.1° | 121.1° |
| N | CD | CD1 | HD11 | 180.0° | 61.8° |
| N | CD | CD1 | HD12 | 54.8° | 58.2° |
| N | CD | CD1 | HD13 | 54.7° | 178.2° |
| H | N | CA | C | 23.5° | 88.7° |
| H | N | CA | CB | 141.4° | 152.6° |
| H | N | CA | HA | 95.0° | 34.2° |
| H | N | CD | CG | 120.4° | 138.5° |
| H | N | CD | CD1 | 1.9° | 102.0° |
| H | N | CD | HD | 118.3° | 19.1° |
| C | CA | CB | HA | 118.4° | 123.0° |
| CA | C | O | OXT | 174.1° | 179.9° |
| CA | C | OXT | HXT | 180.0° | 180.0° |
| C | CA | CB | CG | 90.5° | 156.0° |
| C | CA | CB | OB | 146.6° | 85.6° |
| C | CA | CB | HB | 30.6° | 37.7° |
| CB | CA | C | O | 83.5° | 90.0° |
| CB | CA | C | OXT | 90.9° | 89.9° |
| CA | CB | CG | OB | 121.1° | 118.6° |
| CA | CB | CG | HB | 122.9° | 118.4° |
| CA | CB | OB | HB | 122.9° | 123.4° |
| CA | CB | CG | CD | 34.1° | 22.0° |
| CA | CB | CG | HG2 | 91.2° | 97.0° |
| CA | CB | CG | HG3 | 159.3° | 140.8° |
| CA | CB | OB | HOB | 179.9° | 175.1° |
| HA | CA | C | O | 152.6° | 147.0° |
| HA | CA | C | OXT | 33.1° | 33.1° |
| HA | CA | CB | CG | 151.1° | 81.0° |
| HA | CA | CB | OB | 28.2° | 37.4° |
| HA | CA | CB | HB | 87.8° | 160.7° |
| O | C | OXT | HXT | 5.8° | 0.1° |
| CG | CB | OB | HB | 121.1° | 123.0° |
| CB | CG | CD | HG2 | 125.3° | 119.0° |
| CB | CG | CD | HG3 | 125.3° | 118.9° |
| CB | CG | HG2 | HG3 | 119.4° | 122.2° |
| CB | CG | CD | CD1 | 146.0° | 120.6° |
| CB | CG | CD | HD | 97.6° | 118.3° |
| CG | CB | OB | HOB | 63.9° | 61.5° |
| OB | CB | CG | CD | 87.1° | 140.6° |
| OB | CB | CG | HG2 | 147.7° | 21.6° |
| OB | CB | CG | HG3 | 38.2° | 100.6° |
| HB | CB | CG | CD | 156.9° | 96.4° |
| HB | CB | CG | HG2 | 31.7° | 144.6° |
| HB | CB | CG | HG3 | 77.8° | 22.5° |
| HB | CB | OB | HOB | 57.2° | 61.6° |
| CD | CG | HG2 | HG3 | 119.4° | 122.0° |
| CG | CD | CD1 | HD | 121.3° | 121.1° |
| CG | CD | CD1 | HD11 | 63.4° | 179.6° |
| CG | CD | CD1 | HD12 | 171.4° | 59.6° |
| CG | CD | CD1 | HD13 | 61.9° | 60.4° |
| HG2 | CG | CD | CD1 | 20.7° | 120.4° |
| HG2 | CG | CD | HD | 137.1° | 0.7° |
| HG3 | CG | CD | CD1 | 88.8° | 1.7° |
| HG3 | CG | CD | HD | 27.7° | 122.8° |
| CD | CD1 | HD11 | HD12 | 125.2° | 120.0° |
| CD | CD1 | HD11 | HD13 | 125.3° | 120.0° |
| CD | CD1 | HD12 | HD13 | 117.2° | 120.0° |
| HD | CD | CD1 | HD11 | 57.9° | 59.3° |
| HD | CD | CD1 | HD12 | 67.3° | 179.3° |
| HD | CD | CD1 | HD13 | 176.8° | 60.7° |
| HD11 | CD1 | HD12 | HD13 | 117.2° | 120.0° |
