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SummaryGeometryRelated PDB entries

H5C

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C02C03sing0.00Å1.53Å
C02N20sing0.00Å1.43Å
C02O01doub0.00Å1.18Å
C03C17doub0.00Å1.37ÅAromatic
C03N04sing0.00Å1.35ÅAromatic
C05N04doub0.00Å1.36ÅAromatic
C05N06sing0.00Å1.35ÅAromatic
C07C08sing0.00Å1.57Å
C07N06sing0.00Å1.47Å
C07O16sing0.00Å1.30Å
C08C11sing0.00Å1.57Å
C08O09sing0.00Å1.32Å
C10O09sing0.00Å1.40Å
C11C13sing0.00Å1.28Å
C11O12sing0.00Å1.49Å
C13C14sing0.00Å1.50Å
C14O15sing0.00Å1.40Å
C17N06sing0.00Å1.34ÅAromatic
C17N18sing0.00Å1.49Å
C19N18sing0.00Å1.46Å
C19N20sing0.00Å1.44Å
C19O21doub0.00Å1.19Å
C05H1sing0.00Å1.08Å
C07H2sing0.00Å1.10Å
C08H3sing0.00Å1.10Å
C10H4sing0.00Å1.10Å
C10H5sing0.00Å1.10Å
C10H6sing0.00Å1.10Å
C11H7sing0.00Å1.10Å
C13H8sing0.00Å1.10Å
C14H10sing0.00Å1.10Å
C14H11sing0.00Å1.10Å
N18H12sing0.00Å1.00Å
N20H13sing0.00Å1.00Å
O12H14sing0.00Å0.95Å
O15H15sing0.00Å0.95Å
O16C13sing0.00Å1.67Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C03C02N20119.9°90.0°
C03C02O01120.1°90.0°
C02C03C17119.7°90.0°
C02C03N04132.7°90.0°
N20C02O01120.0°90.0°
C02N20C19120.1°90.0°
C02N20H13119.9°90.0°
C17C03N04107.6°90.0°
C03C17N06108.2°90.0°
C03C17N18120.5°90.0°
C03N04C05108.0°90.0°
N04C05N06107.7°90.0°
N04C05H1126.1°90.0°
C05N06C07127.6°90.0°
C05N06C17108.4°90.0°
N06C05H1126.1°90.0°
C08C07N06113.5°90.0°
C08C07O16106.6°90.0°
C07C08C11103.5°90.0°
C07C08O09109.8°90.0°
C08C07H2107.7°90.0°
C07C08H3110.2°90.0°
N06C07O16108.7°90.0°
C07N06C17123.9°90.0°
N06C07H2108.9°90.0°
O16C07H2111.5°90.0°
C07O16C13107.1°90.0°
C11C08O09108.5°90.0°
C08C11C13103.7°90.0°
C08C11O12108.0°90.0°
C11C08H3110.1°90.0°
C08C11H7109.8°90.0°
C08O09C10114.3°90.0°
O09C08H3114.1°90.0°
O09C10H4109.5°90.0°
O09C10H5109.5°90.0°
O09C10H6109.5°90.0°
C13C11O12109.3°90.0°
C11C13C14110.4°90.0°
C13C11H7114.5°90.0°
C11C13H8113.7°90.0°
C11C13O16104.1°90.0°
O12C11H7111.0°90.0°
C11O12H14109.5°90.0°
C13C14O15108.9°90.0°
C14C13H8110.1°90.0°
C13C14H10109.6°90.0°
C13C14H11109.6°90.0°
C14C13O16110.5°90.0°
O15C14H10109.6°90.0°
O15C14H11109.6°90.0°
C14O15H15109.5°90.0°
N06C17N18131.3°90.0°
C17N18C19120.0°90.0°
C17N18H12120.0°90.0°
N18C19N20119.8°90.0°
N18C19O21119.7°90.0°
C19N18H12120.0°90.0°
N20C19O21120.5°90.0°
C19N20H13119.9°90.0°
H4C10H5109.4°90.0°
H4C10H6109.5°90.0°
H5C10H6109.5°90.0°
H8C13O16107.9°90.0°
H10C14H11109.5°90.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C03C02N20O01179.6°90.0°
C02C03C17N04179.9°90.0°
C02C03N04C05179.8°90.0°
C02C03C17N06179.8°90.0°
C02C03C17N180.5°90.0°
C03C02N20C190.1°90.0°
C03C02N20H13179.9°90.0°
N20C02C03C170.3°90.0°
N20C02C03N04179.8°90.0°
C02N20C19N180.3°90.0°
C02N20C19H13180.0°90.0°
C02N20C19O21179.9°90.0°
O01C02C03C17179.9°90.0°
O01C02C03N040.2°90.0°
O01C02N20C19179.5°90.0°
O01C02N20H130.5°90.0°
C17C03N04C050.1°90.0°
C03C17N06C050.2°90.0°
C03C17N06C07178.9°90.0°
C03C17N06N18179.7°90.0°
C03C17N18C190.4°90.0°
C03C17N18H12179.6°90.0°
C03N04C05N060.0°90.0°
N04C03C17N060.1°90.0°
N04C03C17N18179.6°90.0°
C03N04C05H1179.9°90.0°
N04C05N06H1180.0°90.0°
N04C05N06C07178.8°90.0°
N04C05N06C170.1°90.0°
C05N06C07C0843.4°90.0°
C05N06C07C17178.5°90.0°
C05N06C07O1675.0°90.0°
C05N06C17N18179.5°90.0°
C05N06C07H2163.4°90.0°
C08C07N06O16118.4°90.0°
C08C07N06H2120.0°90.0°
C08C07O16H2117.3°90.0°
C07C08C11O09116.7°90.0°
C07C08C11H3117.8°90.0°
C07C08O09H3124.3°90.0°
C07C08O09C1077.1°90.0°
C07C08C11C1334.7°90.0°
C07C08C11O1281.3°90.0°
C08C07N06C17138.1°90.0°
C07C08C11H7157.6°90.0°
C08C07O16C137.6°90.0°
N06C07O16H2120.0°90.0°
N06C07C08C11133.0°90.0°
N06C07C08O09111.3°90.0°
C07N06C17N180.7°90.0°
C07N06C05H11.2°90.0°
N06C07C08H315.3°90.0°
N06C07O16C13115.0°90.0°
O16C07C08C1113.4°90.0°
O16C07C08O09129.1°90.0°
C07O16C13C1131.7°90.0°
C07O16C13C1486.9°90.0°
O16C07N06C17103.5°90.0°
O16C07C08H3104.3°90.0°
C07O16C13H8152.7°90.0°
C11C08O09H3123.2°90.0°
C11C08O09C10170.4°90.0°
C08C11C13O12115.1°90.0°
C08C11C13H7119.7°90.0°
C08C11O12H7120.4°90.0°
C08C11C13C1480.7°90.0°
C11C08C07H2106.4°90.0°
C08C11C13H8155.0°90.0°
C08C11O12H14180.0°90.0°
C08C11C13O1637.9°90.0°
O09C08C11C13151.4°90.0°
O09C08C11O1235.4°90.0°
O09C08C07H29.4°90.0°
C08O09C10H4180.0°90.0°
C08O09C10H560.0°90.0°
C08O09C10H660.0°90.0°
O09C08C11H785.8°90.0°
C10O09C08H347.2°90.0°
O09C10H4H5120.0°90.0°
O09C10H4H6120.0°90.0°
O09C10H5H6120.0°90.0°
C13C11O12H7127.3°90.0°
C11C13C14H8126.3°90.0°
C11C13C14O16114.6°90.0°
C11C13C14O15137.3°90.0°
C13C11C08H383.0°90.0°
C11C13H8O16114.9°90.0°
C11C13C14H1017.4°90.0°
C11C13C14H11102.8°90.0°
C13C11O12H1467.7°90.0°
O12C11C13C14164.2°90.0°
O12C11C08H3161.0°90.0°
O12C11C13H839.9°90.0°
O12C11C13O1677.2°90.0°
C13C14O15H10119.9°90.0°
C13C14O15H11119.9°90.0°
C14C13C11H738.9°90.0°
C14C13H8O16120.7°90.0°
C13C14H10H11120.2°90.0°
C13C14O15H15180.0°90.0°
O15C14C13H811.0°90.0°
O15C14H10H11120.3°90.0°
O15C14C13O16108.1°90.0°
N06C17N18C19180.0°90.0°
C17N06C05H1179.9°90.0°
C17N06C07H218.1°90.0°
N06C17N18H120.0°90.0°
C17N18C19H12180.0°90.0°
C17N18C19N200.1°90.0°
C17N18C19O21179.9°90.0°
N18C19N20O21179.8°90.0°
N18C19N20H13179.7°90.0°
N20C19N18H12180.0°90.0°
O21C19N18H120.1°90.0°
O21C19N20H130.1°90.0°
H2C07C08H3135.9°90.0°
H2C07O16C13124.9°90.0°
H3C08C11H739.8°90.0°
H4C10H5H6120.0°90.0°
H7C11C13H885.3°90.0°
H7C11O12H1459.6°90.0°
H7C11C13O16157.5°90.0°
H8C13C14H10108.9°90.0°
H8C13C14H11130.9°90.0°
H10C14O15H1560.1°90.0°
H10C14C13O16132.0°90.0°
H11C14O15H1560.1°90.0°
H11C14C13O1611.8°90.0°

249697

PDB entries from 2026-02-25

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