H2V

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C	H	sing	1.09Å	1.10Å
C	HA	sing	1.09Å	1.10Å
C	HB	sing	1.09Å	1.10Å
N	C6	sing	1.46Å	1.45Å
N	HN	sing	0.97Å	1.00Å
O	C3	sing	1.43Å	1.43Å
P	O	sing	1.61Å	1.59Å
P	O1	sing	1.61Å	1.54Å
P	O3	sing	1.61Å	1.61Å
C1	C	sing	1.53Å	1.53Å
C1	C2	sing	1.53Å	1.53Å
C1	C4	sing	1.53Å	1.55Å
N1	C9	sing	1.46Å	1.45Å
N1	HN1	sing	0.97Å	1.00Å
O1	HO1	sing	0.97Å	0.95Å
C2	H2	sing	1.09Å	1.10Å
C2	H2A	sing	1.09Å	1.10Å
C2	H2B	sing	1.09Å	1.10Å
N2	HN2	sing	1.01Å	1.00Å
O2	P	doub	1.48Å	1.53Å
C3	C1	sing	1.53Å	1.54Å
C3	H3	sing	1.09Å	1.10Å
C3	H3A	sing	1.09Å	1.10Å
O3	HO3	sing	0.97Å	0.95Å
C4	O4	sing	1.43Å	1.42Å
C4	H4	sing	1.09Å	1.10Å
O4	HO4	sing	0.97Å	0.95Å
C5	N	sing	1.35Å	1.33Å
C5	C4	sing	1.51Å	1.55Å
O5	C5	doub	1.21Å	1.23Å
C6	C7	sing	1.53Å	1.51Å
C6	H6	sing	1.09Å	1.10Å
C6	H6A	sing	1.09Å	1.10Å
O6	C8	doub	1.21Å	1.23Å
C7	C8	sing	1.51Å	1.51Å
C7	H7	sing	1.09Å	1.10Å
C7	H7A	sing	1.09Å	1.10Å
O7	C11	doub	1.21Å	1.20Å
C8	N1	sing	1.35Å	1.33Å
C9	H9	sing	1.09Å	1.10Å
C9	H9A	sing	1.09Å	1.10Å
C10	S	sing	1.81Å	1.81Å
C10	C9	sing	1.53Å	1.52Å
C10	H10	sing	1.09Å	1.10Å
C10	H10A	sing	1.09Å	1.10Å
C11	S	sing	1.71Å	1.76Å
C11	C12	sing	1.51Å	1.54Å
C12	N2	sing	1.47Å	1.45Å
N2	H24	sing	1.01Å	1.00Å
C12	H12	sing	1.09Å	1.10Å
C12	H26	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
H	C	HA	109.5°	109.5°
H	C	HB	109.4°	109.4°
H	C	C1	109.5°	109.5°
HA	C	HB	109.5°	109.5°
HA	C	C1	109.5°	109.5°
HB	C	C1	109.4°	109.5°
C6	N	HN	119.2°	120.0°
C6	N	C5	121.6°	120.0°
N	C6	C7	110.4°	109.5°
N	C6	H6	109.2°	109.4°
N	C6	H6A	109.2°	109.5°
HN	N	C5	119.2°	120.0°
C3	O	P	127.4°	123.0°
O	C3	C1	106.3°	109.5°
O	C3	H3	110.3°	109.5°
O	C3	H3A	110.3°	109.5°
O	P	O1	107.2°	109.5°
O	P	O3	107.0°	109.5°
O	P	O2	108.4°	109.4°
O1	P	O3	110.3°	109.4°
P	O1	HO1	109.5°	114.0°
O1	P	O2	112.0°	109.5°
O3	P	O2	111.6°	109.5°
P	O3	HO3	109.5°	114.0°
C	C1	C2	108.7°	109.5°
C	C1	C4	107.2°	109.5°
C	C1	C3	111.7°	109.4°
C2	C1	C4	108.3°	109.5°
C1	C2	H2	109.5°	109.5°
C1	C2	H2A	109.5°	109.5°
C1	C2	H2B	109.5°	109.5°
C2	C1	C3	108.4°	109.5°
C4	C1	C3	112.4°	109.5°
C1	C4	O4	106.8°	109.5°
C1	C4	H4	107.3°	109.4°
C1	C4	C5	118.6°	109.4°
C9	N1	HN1	119.2°	120.0°
C9	N1	C8	121.6°	120.0°
N1	C9	H9	110.0°	109.4°
N1	C9	H9A	110.0°	109.5°
N1	C9	C10	107.4°	109.5°
HN1	N1	C8	119.2°	120.0°
H2	C2	H2A	109.5°	109.4°
H2	C2	H2B	109.5°	109.5°
H2A	C2	H2B	109.4°	109.5°
HN2	N2	C12	109.5°	111.0°
HN2	N2	H24	109.5°	111.0°
C1	C3	H3	110.3°	109.5°
C1	C3	H3A	110.3°	109.4°
H3	C3	H3A	109.5°	109.5°
O4	C4	H4	109.0°	109.5°
C4	O4	HO4	109.5°	114.0°
O4	C4	C5	107.5°	109.5°
H4	C4	C5	107.4°	109.5°
N	C5	C4	113.9°	120.0°
N	C5	O5	122.5°	120.0°
C4	C5	O5	123.3°	120.0°
C7	C6	H6	109.2°	109.4°
C7	C6	H6A	109.2°	109.5°
C6	C7	C8	111.8°	109.5°
C6	C7	H7	108.9°	109.4°
C6	C7	H7A	108.9°	109.5°
H6	C6	H6A	109.5°	109.4°
O6	C8	C7	121.2°	120.0°
O6	C8	N1	122.7°	120.0°
C8	C7	H7	108.9°	109.5°
C8	C7	H7A	108.9°	109.5°
C7	C8	N1	116.1°	120.0°
H7	C7	H7A	109.5°	109.4°
O7	C11	S	122.9°	120.0°
O7	C11	C12	123.7°	120.0°
H9	C9	H9A	109.4°	109.4°
H9	C9	C10	110.0°	109.4°
H9A	C9	C10	110.0°	109.5°
S	C10	C9	113.2°	109.5°
S	C10	H10	108.5°	109.5°
S	C10	H10A	108.5°	109.5°
C10	S	C11	101.4°	100.0°
C9	C10	H10	108.6°	109.5°
C9	C10	H10A	108.5°	109.4°
H10	C10	H10A	109.5°	109.4°
S	C11	C12	113.3°	120.0°
C11	C12	N2	118.7°	109.5°
C11	C12	H12	107.1°	109.4°
C11	C12	H26	107.1°	109.5°
C12	N2	H24	109.5°	111.0°
N2	C12	H12	107.1°	109.5°
N2	C12	H26	107.1°	109.5°
H12	C12	H26	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
H	C	HA	HB	120.0°	120.0°
H	C	HA	C1	120.0°	120.0°
H	C	HB	C1	120.0°	119.9°
H	C	C1	C2	180.0°	66.2°
H	C	C1	C4	63.1°	53.9°
H	C	C1	C3	60.4°	173.8°
HA	C	HB	C1	120.0°	120.1°
HA	C	C1	C2	60.0°	173.8°
HA	C	C1	C4	176.9°	66.1°
HA	C	C1	C3	59.6°	53.8°
HB	C	C1	C2	60.0°	53.7°
HB	C	C1	C4	56.8°	173.8°
HB	C	C1	C3	179.7°	66.2°
C6	N	HN	C5	180.0°	179.9°
C6	N	C5	C4	148.6°	176.1°
C6	N	C5	O5	25.5°	3.8°
N	C6	C7	H6	120.1°	120.0°
N	C6	C7	H6A	120.1°	120.1°
N	C6	H6	H6A	119.5°	120.0°
N	C6	C7	C8	75.6°	180.0°
N	C6	C7	H7	164.1°	60.0°
N	C6	C7	H7A	44.8°	59.9°
HN	N	C5	C4	31.4°	3.8°
HN	N	C5	O5	154.5°	176.2°
HN	N	C6	C7	87.5°	0.1°
HN	N	C6	H6	32.7°	120.0°
HN	N	C6	H6A	152.4°	120.0°
C3	O	P	O1	178.8°	65.0°
C3	O	P	O3	60.5°	175.0°
O	C3	C1	C	40.1°	60.0°
O	C3	C1	C2	159.9°	60.0°
O	C3	C1	C4	80.5°	180.0°
C3	O	P	O2	60.1°	55.0°
O	C3	C1	H3	119.5°	120.0°
O	C3	C1	H3A	119.5°	120.0°
O	C3	H3	H3A	121.5°	120.0°
O	P	O1	O3	116.2°	120.0°
O	P	O1	O2	118.8°	120.0°
O	P	O3	O2	118.5°	120.0°
O	P	O1	HO1	118.8°	60.0°
P	O	C3	C1	121.1°	180.0°
P	O	C3	H3	1.6°	60.0°
P	O	C3	H3A	119.4°	60.0°
O	P	O3	HO3	118.5°	180.0°
O1	P	O3	O2	125.2°	120.0°
O1	P	O3	HO3	125.2°	60.0°
O3	P	O1	HO1	125.0°	60.1°
C	C1	C2	C4	116.2°	120.0°
C	C1	C2	C3	121.7°	120.0°
C	C1	C4	C3	123.1°	119.9°
C	C1	C2	H2	180.0°	53.1°
C	C1	C2	H2A	60.0°	173.0°
C	C1	C2	H2B	60.0°	67.0°
C	C1	C3	H3	79.4°	180.0°
C	C1	C3	H3A	159.6°	60.0°
C	C1	C4	O4	0.9°	59.3°
C	C1	C4	H4	115.9°	60.7°
C	C1	C4	C5	122.4°	179.3°
C2	C1	C4	C3	119.8°	120.0°
C1	C2	H2	H2A	120.0°	120.0°
C1	C2	H2	H2B	120.0°	120.0°
C1	C2	H2A	H2B	120.0°	120.0°
C2	C1	C3	H3	40.4°	60.0°
C2	C1	C3	H3A	80.6°	180.0°
C2	C1	C4	O4	118.0°	179.3°
C2	C1	C4	H4	1.3°	59.3°
C2	C1	C4	C5	120.5°	60.7°
C4	C1	C2	H2	63.8°	173.1°
C4	C1	C2	H2A	56.2°	67.0°
C4	C1	C2	H2B	176.1°	53.1°
C4	C1	C3	H3	160.0°	60.0°
C4	C1	C3	H3A	39.1°	59.9°
C1	C4	O4	H4	115.7°	120.0°
C1	C4	O4	C5	128.3°	119.9°
C1	C4	H4	C5	128.5°	119.9°
C1	C4	O4	HO4	180.0°	60.0°
C1	C4	C5	N	135.6°	69.6°
C1	C4	C5	O5	50.3°	110.5°
C9	N1	HN1	C8	180.0°	179.9°
C9	N1	C8	O6	26.4°	0.0°
C9	N1	C8	C7	150.3°	180.0°
N1	C9	H9	H9A	121.0°	120.0°
N1	C9	H9	C10	118.1°	120.0°
N1	C9	H9A	C10	118.1°	120.1°
N1	C9	C10	S	172.4°	180.0°
N1	C9	C10	H10	51.8°	59.9°
N1	C9	C10	H10A	67.1°	60.0°
HN1	N1	C8	O6	153.6°	180.0°
HN1	N1	C8	C7	29.7°	0.1°
HN1	N1	C9	H9	0.6°	120.0°
HN1	N1	C9	H9A	120.0°	120.0°
HN1	N1	C9	C10	120.3°	0.1°
HO1	O1	P	O2	0.0°	180.0°
H2	C2	H2A	H2B	120.0°	120.0°
H2	C2	C1	C3	58.4°	66.9°
H2A	C2	C1	C3	178.4°	53.1°
H2B	C2	C1	C3	61.7°	173.1°
HN2	N2	C12	C11	180.0°	179.9°
HN2	N2	C12	H24	120.0°	123.9°
HN2	N2	C12	H12	58.7°	60.0°
HN2	N2	C12	H26	58.7°	60.0°
O2	P	O3	HO3	0.0°	60.0°
C1	C3	H3	H3A	121.5°	120.0°
C3	C1	C4	O4	122.2°	60.6°
C3	C1	C4	H4	121.0°	179.3°
C3	C1	C4	C5	0.7°	59.4°
O4	C4	H4	C5	116.2°	120.1°
O4	C4	C5	N	103.3°	170.4°
O4	C4	C5	O5	70.8°	9.5°
H4	C4	O4	HO4	64.3°	180.0°
H4	C4	C5	N	13.8°	50.3°
H4	C4	C5	O5	172.1°	129.6°
HO4	O4	C4	C5	51.7°	59.9°
N	C5	C4	O5	174.1°	179.9°
C5	N	C6	C7	92.5°	180.0°
C5	N	C6	H6	147.3°	60.0°
C5	N	C6	H6A	27.6°	59.9°
C7	C6	H6	H6A	119.6°	120.0°
C6	C7	C8	O6	18.4°	0.0°
C6	C7	C8	H7	120.4°	120.0°
C6	C7	C8	H7A	120.4°	120.1°
C6	C7	H7	H7A	119.0°	120.0°
C6	C7	C8	N1	164.9°	180.0°
H6	C6	C7	C8	44.6°	60.0°
H6	C6	C7	H7	75.8°	180.0°
H6	C6	C7	H7A	164.9°	60.0°
H6A	C6	C7	C8	164.3°	59.9°
H6A	C6	C7	H7	44.0°	60.0°
H6A	C6	C7	H7A	75.3°	180.0°
O6	C8	C7	N1	176.7°	180.0°
O6	C8	C7	H7	102.0°	120.0°
O6	C8	C7	H7A	138.8°	120.0°
C8	C7	H7	H7A	118.9°	120.0°
H7	C7	C8	N1	74.8°	60.0°
H7A	C7	C8	N1	44.5°	59.9°
O7	C11	S	C10	15.0°	0.0°
O7	C11	S	C12	179.5°	179.9°
O7	C11	C12	N2	101.4°	0.0°
O7	C11	C12	H12	19.9°	120.0°
O7	C11	C12	H26	137.3°	120.0°
C8	N1	C9	H9	179.3°	60.0°
C8	N1	C9	H9A	60.0°	59.9°
C8	N1	C9	C10	59.6°	180.0°
H9	C9	H9A	C10	120.9°	120.0°
H9	C9	C10	S	52.6°	60.0°
H9	C9	C10	H10	67.9°	60.1°
H9	C9	C10	H10A	173.2°	180.0°
H9A	C9	C10	S	68.0°	60.0°
H9A	C9	C10	H10	171.5°	180.0°
H9A	C9	C10	H10A	52.6°	60.0°
S	C10	C9	H10	120.6°	120.1°
S	C10	C9	H10A	120.5°	120.0°
S	C10	H10	H10A	118.3°	120.0°
C10	S	C11	C12	164.5°	180.0°
C9	C10	H10	H10A	118.3°	119.9°
C9	C10	S	C11	110.0°	180.0°
H10	C10	S	C11	129.5°	60.0°
H10A	C10	S	C11	10.6°	60.0°
S	C11	C12	N2	79.1°	180.0°
S	C11	C12	H12	159.6°	60.0°
S	C11	C12	H26	42.2°	60.0°
C11	C12	N2	H12	121.3°	120.0°
C11	C12	N2	H26	121.3°	120.1°
C11	C12	N2	H24	60.0°	56.0°
C11	C12	H12	H26	115.8°	120.0°
N2	C12	H12	H26	115.8°	120.0°
H24	N2	C12	H12	178.7°	63.9°
H24	N2	C12	H26	61.4°	176.1°

Release date:	2013-03-06
Definition date:	2012-09-21
Last modified:	2021-03-01
Release status:	REL
Processing site:	RCSB
Derived from:	4H2V