H1Q
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O3 | V1 | sing | 1.84Å | 1.81Å | |
O2 | V1 | sing | 1.84Å | 1.88Å | |
O5 | V1 | sing | 1.84Å | 1.71Å | |
V1 | O4 | sing | 1.84Å | 1.93Å | |
V1 | O9 | sing | 1.84Å | 1.91Å | |
O9 | V | sing | 1.84Å | 1.76Å | |
O6 | V | sing | 1.84Å | 1.79Å | |
V | O7 | sing | 1.84Å | 1.66Å | |
V | O5' | sing | 1.84Å | 1.64Å | |
O5' | C5' | sing | 1.43Å | 1.43Å | |
C5' | C4' | sing | 1.53Å | 1.52Å | |
C4' | O4' | sing | 1.44Å | 1.41Å | |
C4' | C3' | sing | 1.55Å | 1.49Å | |
O4' | C1' | sing | 1.44Å | 1.39Å | |
C3' | O3' | sing | 1.43Å | 1.42Å | |
C3' | C2' | sing | 1.55Å | 1.51Å | |
C1' | C2' | sing | 1.54Å | 1.50Å | |
C2' | O2' | sing | 1.43Å | 1.42Å | |
C1' | H1' | sing | 1.09Å | 1.10Å | |
C2' | H2' | sing | 1.09Å | 1.10Å | |
C3' | H3' | sing | 1.09Å | 1.10Å | |
C4' | H4' | sing | 1.09Å | 1.10Å | |
C5' | H5'2 | sing | 1.09Å | 1.10Å | |
C5' | H5'1 | sing | 1.09Å | 1.10Å | |
O2' | H9 | sing | 0.97Å | 0.95Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
C1' | N9 | sing | 1.47Å | 87.60Å | |
N9 | C8 | sing | 1.36Å | 0.00Å | Aromatic |
C8 | N7 | doub | 1.30Å | 0.00Å | Aromatic |
N7 | C5 | sing | 1.35Å | 0.00Å | Aromatic |
C5 | C4 | doub | 1.41Å | 0.00Å | Aromatic |
C4 | N9 | sing | 1.37Å | 0.00Å | Aromatic |
C4 | N3 | sing | 1.33Å | 0.00Å | Aromatic |
N3 | C2 | doub | 1.32Å | 0.00Å | Aromatic |
C2 | N1 | sing | 1.32Å | 0.00Å | Aromatic |
C6 | C5 | sing | 1.41Å | 0.00Å | Aromatic |
C6 | N1 | doub | 1.33Å | 0.00Å | Aromatic |
C6 | N6 | sing | 1.38Å | 0.00Å | |
C8 | H8 | sing | 1.08Å | 0.00Å | |
C2 | H2 | sing | 1.08Å | 0.00Å | |
N6 | HN61 | sing | 0.97Å | 0.00Å | |
N6 | HN62 | sing | 0.97Å | 0.00Å | |
O4 | HO4 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O3 | V1 | O2 | 91.5° | 90.0° |
O3 | V1 | O5 | 97.6° | 90.0° |
O3 | V1 | O4 | 93.6° | 90.0° |
O3 | V1 | O9 | 170.0° | 180.0° |
O2 | V1 | O5 | 121.2° | 120.0° |
O2 | V1 | O4 | 115.8° | 120.0° |
O2 | V1 | O9 | 94.9° | 90.0° |
O5 | V1 | O4 | 121.3° | 120.0° |
O5 | V1 | O9 | 85.6° | 90.0° |
O4 | V1 | O9 | 76.7° | 90.0° |
V1 | O4 | HO4 | 109.5° | 114.0° |
V1 | O9 | V | 121.1° | 114.0° |
O9 | V | O6 | 93.3° | 109.5° |
O9 | V | O7 | 116.4° | 109.4° |
O9 | V | O5' | 115.8° | 109.5° |
O6 | V | O7 | 119.8° | 109.5° |
O6 | V | O5' | 114.3° | 109.5° |
O7 | V | O5' | 98.5° | 109.5° |
V | O5' | C5' | 114.6° | 114.0° |
O5' | C5' | C4' | 147.6° | 109.5° |
O5' | C5' | H5'2 | 99.3° | 109.5° |
O5' | C5' | H5'1 | 99.3° | 109.4° |
C5' | C4' | O4' | 115.0° | 110.6° |
C5' | C4' | C3' | 113.2° | 110.6° |
C5' | C4' | H4' | 108.1° | 110.6° |
C4' | C5' | H5'2 | 99.3° | 109.5° |
C4' | C5' | H5'1 | 99.3° | 109.4° |
O4' | C4' | C3' | 102.5° | 103.5° |
C4' | O4' | C1' | 112.8° | 107.0° |
O4' | C4' | H4' | 109.5° | 110.6° |
C4' | C3' | O3' | 104.4° | 110.9° |
C4' | C3' | C2' | 101.0° | 102.1° |
C4' | C3' | H3' | 113.6° | 111.0° |
C3' | C4' | H4' | 108.4° | 110.6° |
O4' | C1' | C2' | 99.5° | 107.3° |
O4' | C1' | H1' | 128.6° | 109.9° |
O4' | C1' | N9 | 74.5° | 110.1° |
O3' | C3' | C2' | 108.4° | 110.9° |
O3' | C3' | H3' | 114.9° | 110.8° |
C3' | O3' | HO3' | 109.5° | 114.0° |
C3' | C2' | C1' | 98.8° | 104.2° |
C3' | C2' | O2' | 112.7° | 110.5° |
C3' | C2' | H2' | 110.5° | 110.6° |
C2' | C3' | H3' | 113.3° | 110.9° |
C1' | C2' | O2' | 111.6° | 110.5° |
C2' | C1' | H1' | 125.5° | 109.9° |
C1' | C2' | H2' | 110.6° | 110.5° |
C2' | C1' | N9 | 130.5° | 109.9° |
O2' | C2' | H2' | 111.9° | 110.5° |
C2' | O2' | H9 | 109.5° | 114.0° |
H1' | C1' | N9 | 90.6° | 109.8° |
H5'2 | C5' | H5'1 | 109.5° | 109.5° |
C1' | N9 | C8 | 90.0° | 126.2° |
C1' | N9 | C4 | 90.0° | 126.3° |
N9 | C8 | N7 | 90.0° | 110.0° |
C8 | N9 | C4 | 90.0° | 107.4° |
N9 | C8 | H8 | 90.0° | 125.0° |
C8 | N7 | C5 | 90.0° | 109.4° |
N7 | C8 | H8 | 90.0° | 125.0° |
N7 | C5 | C4 | 90.0° | 107.1° |
N7 | C5 | C6 | 90.0° | 134.7° |
C5 | C4 | N9 | 90.0° | 106.0° |
C5 | C4 | N3 | 90.0° | 119.1° |
C4 | C5 | C6 | 90.0° | 118.2° |
N9 | C4 | N3 | 90.0° | 134.9° |
C4 | N3 | C2 | 90.0° | 120.7° |
N3 | C2 | N1 | 90.0° | 122.5° |
N3 | C2 | H2 | 90.0° | 118.8° |
C2 | N1 | C6 | 90.0° | 121.2° |
N1 | C2 | H2 | 90.0° | 118.7° |
C5 | C6 | N1 | 90.0° | 118.5° |
C5 | C6 | N6 | 90.0° | 120.8° |
N1 | C6 | N6 | 90.0° | 120.7° |
C6 | N6 | HN61 | 90.0° | 120.0° |
C6 | N6 | HN62 | 90.0° | 120.1° |
HN61 | N6 | HN62 | 90.0° | 120.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O3 | V1 | O2 | O5 | 99.8° | 90.0° |
O3 | V1 | O2 | O4 | 94.8° | 90.0° |
O3 | V1 | O2 | O9 | 172.4° | 180.0° |
O3 | V1 | O5 | O4 | 99.0° | 90.0° |
O3 | V1 | O5 | O9 | 170.5° | 180.0° |
O3 | V1 | O4 | O9 | 177.5° | 180.0° |
O3 | V1 | O9 | V | 79.3° | 132.3° |
O3 | V1 | O4 | HO4 | 0.0° | 0.0° |
O2 | V1 | O5 | O4 | 164.6° | 179.9° |
O2 | V1 | O5 | O9 | 93.1° | 90.0° |
O2 | V1 | O4 | O9 | 89.0° | 90.0° |
O2 | V1 | O9 | V | 50.5° | 60.0° |
O2 | V1 | O4 | HO4 | 93.4° | 89.9° |
O5 | V1 | O4 | O9 | 76.4° | 90.1° |
O5 | V1 | O9 | V | 171.5° | 60.0° |
O5 | V1 | O4 | HO4 | 101.2° | 90.0° |
O4 | V1 | O9 | V | 64.9° | 180.0° |
V1 | O9 | V | O6 | 87.4° | 60.0° |
V1 | O9 | V | O7 | 38.4° | 60.0° |
V1 | O9 | V | O5' | 153.5° | 180.0° |
O9 | V1 | O4 | HO4 | 177.6° | 179.9° |
O9 | V | O6 | O7 | 123.2° | 120.0° |
O9 | V | O6 | O5' | 120.3° | 120.0° |
O9 | V | O7 | O5' | 124.5° | 120.0° |
O9 | V | O5' | C5' | 30.5° | 180.0° |
O6 | V | O7 | O5' | 124.5° | 120.0° |
O6 | V | O5' | C5' | 137.2° | 60.0° |
O7 | V | O5' | C5' | 94.5° | 60.0° |
V | O5' | C5' | C4' | 126.8° | 180.0° |
V | O5' | C5' | H5'2 | 2.6° | 60.0° |
V | O5' | C5' | H5'1 | 109.0° | 60.1° |
O5' | C5' | C4' | H5'2 | 124.1° | 120.0° |
O5' | C5' | C4' | H5'1 | 124.2° | 119.9° |
O5' | C5' | C4' | O4' | 171.1° | 66.4° |
O5' | C5' | C4' | C3' | 53.7° | 179.5° |
O5' | C5' | C4' | H4' | 66.3° | 56.5° |
O5' | C5' | H5'2 | H5'1 | 103.4° | 120.0° |
C5' | C4' | O4' | C3' | 123.3° | 118.5° |
C5' | C4' | O4' | H4' | 121.8° | 122.9° |
C5' | C4' | C3' | H4' | 119.9° | 123.0° |
C5' | C4' | O4' | C1' | 124.6° | 158.6° |
C5' | C4' | C3' | O3' | 151.9° | 86.2° |
C5' | C4' | C3' | C2' | 95.7° | 155.6° |
C5' | C4' | C3' | H3' | 26.0° | 37.4° |
C4' | C5' | H5'2 | H5'1 | 103.4° | 120.0° |
O4' | C4' | C3' | H4' | 115.7° | 118.5° |
O4' | C4' | C3' | O3' | 83.7° | 155.2° |
O4' | C4' | C3' | C2' | 28.7° | 37.0° |
C4' | O4' | C1' | C2' | 31.0° | 26.5° |
C4' | O4' | C1' | H1' | 176.6° | 146.0° |
O4' | C4' | C3' | H3' | 150.4° | 81.2° |
O4' | C4' | C5' | H5'2 | 64.7° | 173.6° |
O4' | C4' | C5' | H5'1 | 47.0° | 53.5° |
C4' | O4' | C1' | N9 | 98.6° | 93.0° |
C3' | C4' | O4' | C1' | 1.3° | 40.1° |
C4' | C3' | O3' | C2' | 107.0° | 112.7° |
C4' | C3' | O3' | H3' | 125.1° | 123.7° |
C4' | C3' | C2' | H3' | 121.9° | 118.2° |
C4' | C3' | C2' | C1' | 46.7° | 20.9° |
C4' | C3' | C2' | O2' | 164.7° | 97.8° |
C4' | C3' | C2' | H2' | 69.3° | 139.6° |
C3' | C4' | C5' | H5'2 | 177.9° | 59.4° |
C3' | C4' | C5' | H5'1 | 70.4° | 60.6° |
C4' | C3' | O3' | HO3' | 180.0° | 174.1° |
O4' | C1' | C2' | C3' | 46.7° | 2.0° |
O4' | C1' | C2' | H1' | 153.6° | 119.5° |
O4' | C1' | C2' | N9 | 77.8° | 119.6° |
O4' | C1' | C2' | O2' | 165.5° | 120.7° |
O4' | C1' | H1' | N9 | 70.5° | 121.2° |
O4' | C1' | C2' | H2' | 69.2° | 116.7° |
C1' | O4' | C4' | H4' | 113.6° | 78.5° |
O4' | C1' | N9 | C8 | 90.0° | 22.9° |
O4' | C1' | N9 | C4 | 90.0° | 156.7° |
O3' | C3' | C2' | H3' | 128.8° | 123.5° |
O3' | C3' | C2' | C1' | 62.6° | 139.1° |
O3' | C3' | C2' | O2' | 55.4° | 20.4° |
O3' | C3' | C2' | H2' | 178.6° | 102.2° |
O3' | C3' | C4' | H4' | 32.0° | 36.7° |
C3' | C2' | C1' | O2' | 118.9° | 118.7° |
C3' | C2' | C1' | H2' | 115.9° | 118.8° |
C3' | C2' | O2' | H2' | 125.2° | 122.7° |
C3' | C2' | C1' | H1' | 159.8° | 121.5° |
C2' | C3' | C4' | H4' | 144.4° | 81.5° |
C3' | C2' | O2' | H9 | 180.0° | 65.2° |
C2' | C3' | O3' | HO3' | 73.0° | 61.4° |
C3' | C2' | C1' | N9 | 31.1° | 117.6° |
C1' | C2' | O2' | H2' | 124.6° | 122.5° |
C2' | C1' | H1' | N9 | 143.6° | 120.9° |
C1' | C2' | C3' | H3' | 168.6° | 97.4° |
C1' | C2' | O2' | H9 | 69.8° | 180.0° |
C2' | C1' | N9 | C8 | 90.0° | 95.1° |
C2' | C1' | N9 | C4 | 90.0° | 85.3° |
O2' | C2' | C1' | H1' | 40.9° | 119.8° |
O2' | C2' | C3' | H3' | 73.4° | 144.0° |
O2' | C2' | C1' | N9 | 87.7° | 1.1° |
H1' | C1' | C2' | H2' | 84.4° | 2.7° |
H1' | C1' | N9 | C8 | 90.0° | 144.0° |
H1' | C1' | N9 | C4 | 90.0° | 35.6° |
H2' | C2' | C3' | H3' | 52.6° | 21.3° |
H2' | C2' | O2' | H9 | 54.8° | 57.5° |
H2' | C2' | C1' | N9 | 147.0° | 123.6° |
H3' | C3' | C4' | H4' | 93.9° | 160.3° |
H3' | C3' | O3' | HO3' | 54.9° | 62.2° |
H4' | C4' | C5' | H5'2 | 57.8° | 63.5° |
H4' | C4' | C5' | H5'1 | 169.5° | 176.5° |
C1' | N9 | C8 | C4 | 90.0° | 179.7° |
C1' | N9 | C8 | N7 | 90.0° | 180.0° |
C1' | N9 | C4 | C5 | 90.0° | 179.9° |
C1' | N9 | C4 | N3 | 90.0° | 0.4° |
C1' | N9 | C8 | H8 | 90.0° | 0.1° |
N9 | C8 | N7 | H8 | 90.0° | 180.0° |
N9 | C8 | N7 | C5 | 90.0° | 0.0° |
C8 | N9 | C4 | C5 | 90.0° | 0.4° |
C8 | N9 | C4 | N3 | 90.0° | 179.9° |
C8 | N7 | C5 | C4 | 90.0° | 0.3° |
N7 | C8 | N9 | C4 | 90.0° | 0.3° |
C8 | N7 | C5 | C6 | 90.0° | 180.0° |
N7 | C5 | C4 | C6 | 90.0° | 179.8° |
N7 | C5 | C4 | N9 | 90.0° | 0.4° |
N7 | C5 | C4 | N3 | 90.0° | 180.0° |
N7 | C5 | C6 | N1 | 90.0° | 179.9° |
N7 | C5 | C6 | N6 | 90.0° | 0.0° |
C5 | N7 | C8 | H8 | 90.0° | 180.0° |
C5 | C4 | N9 | N3 | 90.0° | 179.5° |
C5 | C4 | N3 | C2 | 90.0° | 0.0° |
C4 | C5 | C6 | N1 | 90.0° | 0.4° |
C4 | C5 | C6 | N6 | 90.0° | 179.7° |
N9 | C4 | N3 | C2 | 90.0° | 179.5° |
N9 | C4 | C5 | C6 | 90.0° | 179.8° |
C4 | N9 | C8 | H8 | 90.0° | 179.7° |
C4 | N3 | C2 | N1 | 90.0° | 0.0° |
N3 | C4 | C5 | C6 | 90.0° | 0.2° |
C4 | N3 | C2 | H2 | 90.0° | 180.0° |
N3 | C2 | N1 | H2 | 90.0° | 180.0° |
N3 | C2 | N1 | C6 | 90.0° | 0.2° |
C2 | N1 | C6 | C5 | 90.0° | 0.4° |
C2 | N1 | C6 | N6 | 90.0° | 179.7° |
C5 | C6 | N1 | N6 | 90.0° | 179.9° |
C5 | C6 | N6 | HN61 | 90.0° | 0.0° |
C5 | C6 | N6 | HN62 | 90.0° | 180.0° |
C6 | N1 | C2 | H2 | 90.0° | 179.8° |
N1 | C6 | N6 | HN61 | 90.0° | 179.9° |
N1 | C6 | N6 | HN62 | 90.0° | 0.1° |
C6 | N6 | HN61 | HN62 | 90.0° | 180.0° |