H1Q

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O3	V1	sing	2.00Å	1.81Å
O2	V1	sing	1.64Å	1.88Å
O5	V1	sing	1.64Å	1.71Å
V1	O4	sing	1.64Å	1.93Å
V1	O9	sing	2.01Å	1.91Å
O9	V	sing	1.64Å	1.76Å
O6	V	sing	1.63Å	1.79Å
V	O7	sing	1.64Å	1.66Å
V	O5'	sing	1.67Å	1.64Å
O5'	C5'	sing	1.44Å	1.43Å
C5'	C4'	sing	1.48Å	1.52Å
C4'	O4'	sing	1.45Å	1.41Å
C4'	C3'	sing	1.53Å	1.49Å
O4'	C1'	sing	1.43Å	1.39Å
C3'	O3'	sing	1.42Å	1.42Å
C3'	C2'	sing	1.54Å	1.51Å
C1'	C2'	sing	1.54Å	1.50Å
C2'	O2'	sing	1.42Å	1.42Å
C1'	H1'	sing	1.02Å	1.10Å
C2'	H2'	sing	0.99Å	1.10Å
C3'	H3'	sing	0.99Å	1.10Å
C4'	H4'	sing	0.99Å	1.10Å
C5'	H5'2	sing	0.99Å	1.10Å
C5'	H5'1	sing	0.99Å	1.10Å
O2'	H9	sing	0.84Å	0.95Å
O3'	HO3'	sing	0.84Å	0.95Å
C1'	N9	sing	1.47Å	87.60Å
N9	C8	sing	1.37Å	0.00Å	Aromatic
C8	N7	doub	1.31Å	0.00Å	Aromatic
N7	C5	sing	1.39Å	0.00Å	Aromatic
C5	C4	doub	1.38Å	0.00Å	Aromatic
C4	N9	sing	1.37Å	0.00Å	Aromatic
C4	N3	sing	1.34Å	0.00Å	Aromatic
N3	C2	doub	1.33Å	0.00Å	Aromatic
C2	N1	sing	1.34Å	0.00Å	Aromatic
C6	C5	sing	1.41Å	0.00Å	Aromatic
C6	N1	doub	1.36Å	0.00Å	Aromatic
C6	N6	sing	1.33Å	0.00Å
C8	H8	sing	0.94Å	0.00Å
C2	H2	sing	0.95Å	0.00Å
N6	HN61	sing	0.88Å	0.00Å
N6	HN62	sing	0.88Å	0.00Å
O4	HO4	sing	0.87Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O3	V1	O2	91.5°	87.7°
O3	V1	O5	97.6°	93.1°
O3	V1	O4	93.6°	87.2°
O3	V1	O9	170.0°	171.0°
O2	V1	O5	121.2°	119.9°
O2	V1	O4	115.8°	120.9°
O2	V1	O9	94.9°	88.3°
O5	V1	O4	121.3°	119.1°
O5	V1	O9	85.6°	95.9°
O4	V1	O9	76.7°	87.9°
V1	O4	HO4	109.5°	109.4°
V1	O9	V	121.1°	143.7°
O9	V	O6	93.3°	108.4°
O9	V	O7	116.4°	109.1°
O9	V	O5'	115.8°	110.5°
O6	V	O7	119.8°	108.4°
O6	V	O5'	114.3°	108.4°
O7	V	O5'	98.5°	112.0°
V	O5'	C5'	114.6°	119.6°
O5'	C5'	C4'	147.6°	109.0°
O5'	C5'	H5'2	99.3°	109.6°
O5'	C5'	H5'1	99.3°	109.7°
C5'	C4'	O4'	115.0°	108.0°
C5'	C4'	C3'	113.2°	119.6°
C5'	C4'	H4'	108.1°	106.6°
C4'	C5'	H5'2	99.3°	110.1°
C4'	C5'	H5'1	99.3°	109.5°
O4'	C4'	C3'	102.5°	103.4°
C4'	O4'	C1'	112.8°	109.7°
O4'	C4'	H4'	109.5°	109.4°
C4'	C3'	O3'	104.4°	109.2°
C4'	C3'	C2'	101.0°	102.5°
C4'	C3'	H3'	113.6°	110.9°
C3'	C4'	H4'	108.4°	109.6°
O4'	C1'	C2'	99.5°	107.5°
O4'	C1'	H1'	128.6°	108.4°
O4'	C1'	N9	74.5°	108.3°
O3'	C3'	C2'	108.4°	114.1°
O3'	C3'	H3'	114.9°	109.9°
C3'	O3'	HO3'	109.5°	110.6°
C3'	C2'	C1'	98.8°	102.6°
C3'	C2'	O2'	112.7°	111.7°
C3'	C2'	H2'	110.5°	109.6°
C2'	C3'	H3'	113.3°	110.1°
C1'	C2'	O2'	111.6°	113.3°
C2'	C1'	H1'	125.5°	108.6°
C1'	C2'	H2'	110.6°	109.2°
C2'	C1'	N9	130.5°	115.0°
O2'	C2'	H2'	111.9°	110.1°
C2'	O2'	H9	109.5°	110.6°
H1'	C1'	N9	90.6°	108.8°
H5'2	C5'	H5'1	109.5°	108.9°
C1'	N9	C8	90.0°	128.5°
C1'	N9	C4	90.0°	125.9°
N9	C8	N7	90.0°	113.9°
C8	N9	C4	90.0°	105.7°
N9	C8	H8	90.0°	123.0°
C8	N7	C5	90.0°	103.9°
N7	C8	H8	90.0°	123.2°
N7	C5	C4	90.0°	110.7°
N7	C5	C6	90.0°	131.8°
C5	C4	N9	90.0°	105.9°
C5	C4	N3	90.0°	126.2°
C4	C5	C6	90.0°	117.5°
N9	C4	N3	90.0°	127.9°
C4	N3	C2	90.0°	111.1°
N3	C2	N1	90.0°	129.2°
N3	C2	H2	90.0°	115.4°
C2	N1	C6	90.0°	118.6°
N1	C2	H2	90.0°	115.3°
C5	C6	N1	90.0°	117.3°
C5	C6	N6	90.0°	123.7°
N1	C6	N6	90.0°	119.0°
C6	N6	HN61	90.0°	120.3°
C6	N6	HN62	90.0°	119.9°
HN61	N6	HN62	90.0°	119.8°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O3	V1	O2	O5	99.8°	92.3°
O3	V1	O2	O4	94.8°	85.4°
O3	V1	O2	O9	172.4°	171.9°
O3	V1	O5	O4	99.0°	88.6°
O3	V1	O5	O9	170.5°	179.4°
O3	V1	O4	O9	177.5°	172.4°
O3	V1	O9	V	79.3°	111.3°
O3	V1	O4	HO4	0.0°	122.5°
O2	V1	O5	O4	164.6°	177.7°
O2	V1	O5	O9	93.1°	91.4°
O2	V1	O4	O9	89.0°	86.8°
O2	V1	O9	V	50.5°	175.0°
O2	V1	O4	HO4	93.4°	151.9°
O5	V1	O4	O9	76.4°	95.6°
O5	V1	O9	V	171.5°	65.1°
O5	V1	O4	HO4	101.2°	30.5°
O4	V1	O9	V	64.9°	53.9°
V1	O9	V	O6	87.4°	113.6°
V1	O9	V	O7	38.4°	4.2°
V1	O9	V	O5'	153.5°	127.7°
O9	V1	O4	HO4	177.6°	65.1°
O9	V	O6	O7	123.2°	118.3°
O9	V	O6	O5'	120.3°	119.9°
O9	V	O7	O5'	124.5°	122.6°
O9	V	O5'	C5'	30.5°	95.3°
O6	V	O7	O5'	124.5°	119.5°
O6	V	O5'	C5'	137.2°	146.0°
O7	V	O5'	C5'	94.5°	26.5°
V	O5'	C5'	C4'	126.8°	68.8°
V	O5'	C5'	H5'2	2.6°	51.7°
V	O5'	C5'	H5'1	109.0°	171.3°
O5'	C5'	C4'	H5'2	124.1°	120.2°
O5'	C5'	C4'	H5'1	124.2°	120.1°
O5'	C5'	C4'	O4'	171.1°	74.3°
O5'	C5'	C4'	C3'	53.7°	168.1°
O5'	C5'	C4'	H4'	66.3°	43.3°
O5'	C5'	H5'2	H5'1	103.4°	120.1°
C5'	C4'	O4'	C3'	123.3°	127.6°
C5'	C4'	O4'	H4'	121.8°	115.7°
C5'	C4'	C3'	H4'	119.9°	123.4°
C5'	C4'	O4'	C1'	124.6°	157.5°
C5'	C4'	C3'	O3'	151.9°	80.7°
C5'	C4'	C3'	C2'	95.7°	157.9°
C5'	C4'	C3'	H3'	26.0°	40.5°
C4'	C5'	H5'2	H5'1	103.4°	120.1°
O4'	C4'	C3'	H4'	115.7°	116.6°
O4'	C4'	C3'	O3'	83.7°	159.3°
O4'	C4'	C3'	C2'	28.7°	37.9°
C4'	O4'	C1'	C2'	31.0°	9.2°
C4'	O4'	C1'	H1'	176.6°	126.4°
O4'	C4'	C3'	H3'	150.4°	79.5°
O4'	C4'	C5'	H5'2	64.7°	165.5°
O4'	C4'	C5'	H5'1	47.0°	45.8°
C4'	O4'	C1'	N9	98.6°	115.6°
C3'	C4'	O4'	C1'	1.3°	29.9°
C4'	C3'	O3'	C2'	107.0°	114.0°
C4'	C3'	O3'	H3'	125.1°	121.8°
C4'	C3'	C2'	H3'	121.9°	118.0°
C4'	C3'	C2'	C1'	46.7°	31.9°
C4'	C3'	C2'	O2'	164.7°	89.8°
C4'	C3'	C2'	H2'	69.3°	147.9°
C3'	C4'	C5'	H5'2	177.9°	47.9°
C3'	C4'	C5'	H5'1	70.4°	71.8°
C4'	C3'	O3'	HO3'	180.0°	172.2°
O4'	C1'	C2'	C3'	46.7°	15.0°
O4'	C1'	C2'	H1'	153.6°	117.0°
O4'	C1'	C2'	N9	77.8°	120.7°
O4'	C1'	C2'	O2'	165.5°	105.6°
O4'	C1'	H1'	N9	70.5°	117.6°
O4'	C1'	C2'	H2'	69.2°	131.2°
C1'	O4'	C4'	H4'	113.6°	86.9°
O4'	C1'	N9	C8	90.0°	23.9°
O4'	C1'	N9	C4	90.0°	156.1°
O3'	C3'	C2'	H3'	128.8°	124.1°
O3'	C3'	C2'	C1'	62.6°	149.8°
O3'	C3'	C2'	O2'	55.4°	28.2°
O3'	C3'	C2'	H2'	178.6°	94.2°
O3'	C3'	C4'	H4'	32.0°	42.6°
C3'	C2'	C1'	O2'	118.9°	120.6°
C3'	C2'	C1'	H2'	115.9°	116.3°
C3'	C2'	O2'	H2'	125.2°	122.1°
C3'	C2'	C1'	H1'	159.8°	102.1°
C2'	C3'	C4'	H4'	144.4°	78.7°
C3'	C2'	O2'	H9	180.0°	166.3°
C2'	C3'	O3'	HO3'	73.0°	73.9°
C3'	C2'	C1'	N9	31.1°	135.7°
C1'	C2'	O2'	H2'	124.6°	122.6°
C2'	C1'	H1'	N9	143.6°	125.9°
C1'	C2'	C3'	H3'	168.6°	86.1°
C1'	C2'	O2'	H9	69.8°	78.4°
C2'	C1'	N9	C8	90.0°	96.4°
C2'	C1'	N9	C4	90.0°	83.6°
O2'	C2'	C1'	H1'	40.9°	137.4°
O2'	C2'	C3'	H3'	73.4°	152.3°
O2'	C2'	C1'	N9	87.7°	15.1°
H1'	C1'	C2'	H2'	84.4°	14.2°
H1'	C1'	N9	C8	90.0°	141.5°
H1'	C1'	N9	C4	90.0°	38.5°
H2'	C2'	C3'	H3'	52.6°	29.9°
H2'	C2'	O2'	H9	54.8°	44.2°
H2'	C2'	C1'	N9	147.0°	108.0°
H3'	C3'	C4'	H4'	93.9°	163.9°
H3'	C3'	O3'	HO3'	54.9°	50.3°
H4'	C4'	C5'	H5'2	57.8°	77.0°
H4'	C4'	C5'	H5'1	169.5°	163.3°
C1'	N9	C8	C4	90.0°	180.0°
C1'	N9	C8	N7	90.0°	179.9°
C1'	N9	C4	C5	90.0°	180.0°
C1'	N9	C4	N3	90.0°	0.1°
C1'	N9	C8	H8	90.0°	0.1°
N9	C8	N7	H8	90.0°	179.8°
N9	C8	N7	C5	90.0°	0.1°
C8	N9	C4	C5	90.0°	0.0°
C8	N9	C4	N3	90.0°	179.9°
C8	N7	C5	C4	90.0°	0.1°
N7	C8	N9	C4	90.0°	0.1°
C8	N7	C5	C6	90.0°	179.9°
N7	C5	C4	C6	90.0°	180.0°
N7	C5	C4	N9	90.0°	0.0°
N7	C5	C4	N3	90.0°	180.0°
N7	C5	C6	N1	90.0°	180.0°
N7	C5	C6	N6	90.0°	0.1°
C5	N7	C8	H8	90.0°	179.9°
C5	C4	N9	N3	90.0°	180.0°
C5	C4	N3	C2	90.0°	0.0°
C4	C5	C6	N1	90.0°	0.0°
C4	C5	C6	N6	90.0°	179.9°
N9	C4	N3	C2	90.0°	179.9°
N9	C4	C5	C6	90.0°	180.0°
C4	N9	C8	H8	90.0°	179.9°
C4	N3	C2	N1	90.0°	0.0°
N3	C4	C5	C6	90.0°	0.0°
C4	N3	C2	H2	90.0°	180.0°
N3	C2	N1	H2	90.0°	179.9°
N3	C2	N1	C6	90.0°	0.1°
C2	N1	C6	C5	90.0°	0.0°
C2	N1	C6	N6	90.0°	180.0°
C5	C6	N1	N6	90.0°	179.9°
C5	C6	N6	HN61	90.0°	180.0°
C5	C6	N6	HN62	90.0°	0.0°
C6	N1	C2	H2	90.0°	180.0°
N1	C6	N6	HN61	90.0°	0.1°
N1	C6	N6	HN62	90.0°	179.9°
C6	N6	HN61	HN62	90.0°	180.0°

Release date:	2019-04-03
Definition date:	2018-11-05
Last modified:	2026-07-31
Release status:	REL
Processing site:	EBI
Derived from:	6HWR