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GZ0

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N2C2sing1.37Å1.35Å
C2N1doub1.32Å1.35Å
C2N3sing1.36Å1.35Å
N1C6sing1.34Å1.37Å
O2'C2'sing1.43Å1.41Å
N3C4sing1.37Å1.34Å
C6O6doub1.22Å1.25Å
C6C5sing1.47Å1.49Å
C4C5doub1.39Å1.38ÅAromatic
C4N9sing1.36Å1.33ÅAromatic
O3'C3'sing1.43Å1.43Å
C5N7sing1.35Å1.34ÅAromatic
C2'C1'sing1.54Å1.48Å
C2'C3'sing1.55Å1.53Å
N9C1'sing1.47Å1.46Å
N9C8sing1.36Å1.34ÅAromatic
C1'O4'sing1.45Å1.43Å
C3'C4'sing1.55Å1.52Å
N7C8doub1.30Å1.36ÅAromatic
O2BPBdoub1.48Å1.52Å
O4'C4'sing1.44Å1.45Å
C4'C5'sing1.53Å1.57Å
O3APBsing1.61Å1.59Å
O3APAsing1.61Å1.59Å
PBO3Bsing1.61Å1.50Å
PBO1Bsing1.61Å1.58Å
C5'O5'sing1.43Å1.42Å
O5'PAsing1.61Å1.62Å
O31C31sing1.43Å1.44Å
PAO1Adoub1.48Å1.50Å
PAO2Asing1.61Å1.53Å
C11O1Bsing1.43Å1.44Å
C11O51sing1.43Å1.44Å
C11C21sing1.53Å1.53Å
O21C21sing1.43Å1.41Å
O51C51sing1.43Å1.37Å
C21C31sing1.53Å1.49Å
C31C41sing1.53Å1.52Å
C51C41sing1.53Å1.54Å
C51C61sing1.53Å1.51Å
C41O41sing1.43Å1.42Å
C71C61sing1.53Å1.54Å
C71O71sing1.43Å1.44Å
C61O6Asing1.43Å1.46Å
O3BH1sing0.97Å0.95Å
C11H2sing1.09Å1.10Å
C21H3sing1.09Å1.10Å
O21H4sing0.97Å0.95Å
C31H5sing1.09Å1.10Å
O31H6sing0.97Å0.95Å
C41H7sing1.09Å1.10Å
O41H8sing0.97Å0.95Å
C51H9sing1.09Å1.10Å
C61H10sing1.09Å1.10Å
C71H11sing1.09Å1.10Å
C71H12sing1.09Å1.10Å
O71H13sing0.97Å0.95Å
O6AH14sing0.97Å0.95Å
O2AH15sing0.97Å0.95Å
C5'H16sing1.09Å1.10Å
C5'H17sing1.09Å1.10Å
C4'H18sing1.09Å1.10Å
C3'H19sing1.09Å1.10Å
O3'H20sing0.97Å0.95Å
C2'H21sing1.09Å1.10Å
O2'H22sing0.97Å0.95Å
C1'H23sing1.09Å1.10Å
N3H24sing0.97Å1.00Å
N2H25sing0.97Å1.00Å
N2H26sing0.97Å1.00Å
C8H27sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
N2C2N1120.8°118.8°
N2C2N3117.0°118.7°
C2N2H25120.0°120.0°
C2N2H26120.0°120.0°
N1C2N3122.2°122.5°
C2N1C6120.6°121.4°
C2N3C4122.0°120.5°
C2N3H24119.0°119.7°
N1C6O6122.5°120.7°
N1C6C5117.2°118.6°
O2'C2'C1'111.0°110.5°
O2'C2'C3'114.9°110.5°
O2'C2'H21110.6°110.5°
C2'O2'H22109.5°114.0°
N3C4C5119.4°118.9°
N3C4N9131.8°134.7°
C4N3H24119.0°119.7°
O6C6C5120.3°120.7°
C6C5C4118.6°118.1°
C6C5N7134.0°134.5°
C5C4N9108.9°106.4°
C4C5N7107.2°107.4°
C4N9C1'125.9°126.2°
C4N9C8107.1°107.5°
O3'C3'C2'114.5°110.7°
O3'C3'C4'108.3°110.5°
O3'C3'H19110.9°110.5°
C3'O3'H20109.5°113.9°
C5N7C8106.9°109.2°
C1'C2'C3'101.7°104.1°
C2'C1'N9114.5°110.4°
C2'C1'O4'101.2°104.9°
C1'C2'H21109.4°110.6°
C2'C1'H23109.7°110.4°
C2'C3'C4'103.6°104.1°
C2'C3'H19109.5°110.5°
C3'C2'H21108.9°110.4°
C1'N9C8127.1°126.2°
N9C1'O4'110.5°110.4°
N9C1'H23110.1°110.4°
N9C8N7109.9°109.5°
N9C8H27125.0°125.3°
C1'O4'C4'106.0°105.2°
O4'C1'H23110.5°110.2°
C3'C4'O4'104.8°104.9°
C3'C4'C5'113.2°110.4°
C3'C4'H18106.5°110.4°
C4'C3'H19109.7°110.5°
N7C8H27125.1°125.2°
O2BPBO3A107.4°109.5°
O2BPBO3B111.9°109.5°
O2BPBO1B116.0°109.5°
O4'C4'C5'118.4°110.4°
O4'C4'H18107.3°110.4°
C4'C5'O5'110.6°109.5°
C4'C5'H16109.2°109.5°
C4'C5'H17109.2°109.5°
C5'C4'H18106.0°110.4°
PBO3APA119.4°134.0°
O3APBO3B112.1°109.4°
O3APBO1B102.0°109.5°
O3APAO5'102.0°109.4°
O3APAO1A113.7°109.5°
O3APAO2A115.6°109.4°
O3BPBO1B107.1°109.4°
PBO3BH1109.5°114.0°
PBO1BC11120.4°123.0°
C5'O5'PA129.3°123.0°
O5'C5'H16109.2°109.5°
O5'C5'H17109.2°109.4°
O5'PAO1A118.5°109.5°
O5'PAO2A99.7°109.5°
O31C31C21111.3°109.6°
O31C31C41109.8°109.6°
O31C31H5109.7°109.6°
C31O31H6109.5°114.0°
O1APAO2A107.0°109.5°
PAO2AH15109.5°114.0°
O1BC11O51111.0°109.5°
O1BC11C21106.1°109.5°
O1BC11H2108.5°109.5°
O51C11C21114.9°109.4°
C11O51C51121.6°114.1°
O51C11H2108.6°109.5°
C11C21O21106.2°109.5°
C11C21C31111.6°109.2°
C21C11H2107.5°109.5°
C11C21H3109.8°109.5°
O21C21C31107.5°109.5°
O21C21H3111.4°109.6°
C21O21H4109.5°114.0°
O51C51C41120.9°109.4°
O51C51C61107.2°109.5°
O51C51H9106.9°109.5°
C21C31C41108.5°109.0°
C31C21H3110.3°109.6°
C21C31H5108.9°109.6°
C31C41C51113.7°109.1°
C31C41O41111.5°109.6°
C41C31H5108.5°109.5°
C31C41H7105.2°109.5°
C41C51C61110.3°109.5°
C51C41O41114.3°109.5°
C51C41H7105.0°109.6°
C41C51H9105.1°109.5°
C51C61C71114.3°109.5°
C51C61O6A105.9°109.5°
C61C51H9105.3°109.5°
C51C61H10108.2°109.5°
O41C41H7106.3°109.5°
C41O41H8109.5°114.0°
C61C71O71105.3°109.5°
C71C61O6A111.5°109.4°
C71C61H10107.9°109.5°
C61C71H11110.5°109.5°
C61C71H12110.5°109.4°
O71C71H11110.5°109.5°
O71C71H12110.5°109.4°
C71O71H13109.5°114.0°
O6AC61H10108.9°109.5°
C61O6AH14109.5°114.0°
H11C71H12109.4°109.5°
H16C5'H17109.5°109.4°
H25N2H26120.0°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N2C2N1N3179.4°179.9°
N2C2N1C6179.5°180.0°
N2C2N3C4179.4°180.0°
N2C2N3H240.6°0.0°
C2N2H25H26180.0°179.9°
N1C2N3C40.1°0.1°
C2N1C6O6178.9°180.0°
C2N1C6C50.6°0.0°
N1C2N3H24180.0°179.9°
N1C2N2H250.0°0.0°
N1C2N2H26180.0°180.0°
N3C2N1C60.1°0.1°
C2N3C4H24180.0°180.0°
C2N3C4C51.0°0.0°
C2N3C4N9179.7°180.0°
N3C2N2H25179.4°180.0°
N3C2N2H260.5°0.1°
N1C6O6C5179.5°180.0°
N1C6C5C41.4°0.1°
N1C6C5N7177.8°179.8°
O2'C2'C3'O3'31.1°0.0°
O2'C2'C1'C3'122.6°118.7°
O2'C2'C1'H21122.3°122.7°
O2'C2'C3'H21124.6°122.6°
O2'C2'C1'N972.9°98.5°
O2'C2'C1'O4'168.3°142.6°
O2'C2'C3'C4'148.8°118.7°
O2'C2'C3'H1994.3°122.7°
O2'C2'C1'H2351.5°23.9°
N3C4C5C61.6°0.1°
N3C4C5N9179.5°180.0°
N3C4C5N7178.9°179.8°
N3C4N9C1'1.5°0.0°
N3C4N9C8179.4°179.7°
O6C6C5C4178.0°179.9°
O6C6C5N71.7°0.2°
C6C5C4N7177.3°179.9°
C6C5C4N9178.9°179.9°
C6C5N7C8178.0°179.9°
C5C4N9C1'179.1°179.9°
C5C4N9C81.2°0.2°
C4C5N7C81.3°0.0°
C5C4N3H24179.0°180.0°
N9C4C5N71.6°0.1°
C4N9C1'C2'130.8°85.3°
C4N9C1'C8177.5°179.7°
C4N9C1'O4'115.8°159.2°
C4N9C8N70.4°0.2°
C4N9C1'H236.6°37.1°
N9C4N3H240.3°0.0°
C4N9C8H27179.7°179.8°
O3'C3'C2'C1'88.9°118.6°
O3'C3'C2'C4'117.7°118.7°
O3'C3'C2'H19125.4°122.7°
O3'C3'C4'H19121.2°122.6°
O3'C3'C4'O4'119.9°142.7°
O3'C3'C4'C5'109.7°98.4°
O3'C3'C4'H186.4°23.9°
O3'C3'C2'H21155.7°122.6°
C5N7C8N90.6°0.1°
C5N7C8H27179.3°179.8°
C1'C2'C3'H21115.4°118.7°
C2'C1'N9O4'113.4°115.5°
C2'C1'N9H23124.2°122.4°
C2'C1'N9C851.7°95.0°
C2'C1'O4'H23116.2°118.9°
C1'C2'C3'C4'28.9°0.0°
C2'C1'O4'C4'46.1°40.4°
C1'C2'C3'H19145.8°118.7°
C1'C2'O2'H22180.0°180.0°
C3'C2'C1'N9164.5°142.8°
C3'C2'C1'O4'45.7°23.9°
C2'C3'C4'H19116.8°118.6°
C2'C3'C4'O4'2.0°23.9°
C2'C3'C4'C5'128.4°142.8°
C2'C3'C4'H18115.6°95.0°
C2'C3'O3'H20180.0°65.2°
C3'C2'O2'H2265.3°65.3°
C3'C2'C1'H2371.1°94.8°
N9C1'O4'H23122.2°122.3°
C1'N9C8N7178.2°179.9°
N9C1'O4'C4'167.7°159.2°
N9C1'C2'H2149.5°24.2°
C1'N9C8H271.8°0.0°
C8N9C1'O4'61.7°20.4°
N9C8N7H27180.0°180.0°
C8N9C1'H23175.9°142.6°
C1'O4'C4'C3'27.2°40.4°
C1'O4'C4'C5'154.4°159.2°
C1'O4'C4'H1885.8°78.5°
O4'C1'C2'H2169.4°94.7°
C3'C4'O4'C5'127.3°118.9°
C3'C4'O4'H18113.0°118.9°
C3'C4'C5'H18116.4°122.3°
C3'C4'C5'O5'58.6°176.5°
C3'C4'C5'H16178.8°63.4°
C3'C4'C5'H1761.5°56.6°
C4'C3'O3'H2065.0°180.0°
C4'C3'C2'H2186.6°118.7°
O2BPBO3AO3B123.4°120.0°
O2BPBO3AO1B122.4°120.0°
O2BPBO3APA163.5°40.0°
O2BPBO3BO1B128.2°120.0°
O2BPBO1BC113.8°54.9°
O2BPBO3BH10.0°180.0°
O4'C4'C5'H18120.4°122.2°
O4'C4'C5'O5'64.5°68.0°
O4'C4'C5'H1655.7°52.1°
O4'C4'C5'H17175.3°172.1°
O4'C4'C3'H19118.9°94.7°
C4'O4'C1'H2370.1°78.5°
C4'C5'O5'H16120.2°120.1°
C4'C5'O5'H17120.2°120.0°
C4'C5'O5'PA121.5°180.0°
C4'C5'H16H17119.5°120.0°
C5'C4'C3'H1911.5°24.1°
O3APBO3BO1B111.0°120.0°
PBO3APAO5'124.4°160.0°
PBO3APAO1A106.9°40.0°
PBO3APAO2A17.4°80.0°
O3APBO1BC11112.5°175.0°
O3APBO3BH1120.8°60.0°
PAO3APBO3B73.1°80.0°
PAO3APBO1B41.1°160.0°
O3APAO5'C5'103.6°175.0°
O3APAO5'O1A125.6°120.0°
O3APAO5'O2A119.0°120.0°
O3APAO1AO2A128.8°120.0°
O3APAO2AH15127.7°60.1°
O3BPBO1BC11129.6°65.1°
PBO1BC11O5194.2°90.1°
PBO1BC11C21140.3°150.0°
O1BPBO3BH1128.2°60.0°
PBO1BC11H225.1°30.0°
C5'O5'PAO1A22.0°54.9°
C5'O5'PAO2A137.5°65.1°
O5'C5'H16H17119.5°119.9°
O5'C5'C4'H18175.1°54.2°
O5'PAO1AO2A111.4°120.0°
O5'PAO2AH15123.9°59.9°
PAO5'C5'H16118.3°59.9°
PAO5'C5'H171.3°60.0°
O31C31C21C1160.4°62.8°
O31C31C21O2155.6°57.0°
O31C31C21C41120.9°119.9°
O31C31C21H5121.1°120.3°
O31C31C41H5119.9°120.3°
O31C31C41C5175.3°62.9°
O31C31C41O41153.8°177.2°
O31C31C21H3177.3°177.2°
O31C31C41H739.1°57.1°
O1APAO2AH150.0°179.9°
O1BC11O51C21120.4°120.0°
O1BC11O51H2119.2°120.0°
O1BC11C21H2115.9°120.1°
O1BC11C21O2172.6°62.5°
O1BC11O51C51139.3°178.8°
O1BC11C21C31170.6°177.6°
O1BC11C21H348.0°57.6°
O51C11C21H2121.0°120.0°
O51C11C21O21164.3°177.5°
O51C11C21C3147.5°57.7°
C11O51C51C415.5°61.2°
C11O51C51C61133.0°178.8°
O51C11C21H375.1°62.3°
C11O51C51H9114.4°58.8°
C11C21O21C31119.5°119.7°
C11C21O21H3119.5°120.1°
C21C11O51C5118.9°61.2°
C11C21C31H3122.3°119.9°
C11C21C31C4160.6°57.1°
C11C21O21H474.3°60.0°
C11C21C31H5178.5°176.9°
O21C21C31H3121.7°120.2°
O21C21C31C41176.6°176.9°
O21C21C11H243.3°57.5°
O21C21C31H565.5°63.3°
O51C51C41C3119.9°57.6°
O51C51C41C61126.1°120.0°
O51C51C41H9120.8°120.0°
O51C51C61H9113.6°120.1°
O51C51C41O41109.5°62.3°
O51C51C61C7131.7°60.1°
O51C51C61O6A154.8°179.9°
C51O51C11H2101.5°58.8°
O51C51C41H7134.4°177.5°
O51C51C61H1088.5°59.9°
C21C31C41H5118.2°119.8°
C21C31C41C5146.6°57.0°
C21C31C41O4184.3°62.9°
C31C21C11H273.5°62.3°
C31C21O21H4166.2°179.7°
C21C31O31H6180.0°60.0°
C21C31C41H7160.9°177.0°
C31C41C51O41129.5°119.9°
C31C41C51H7114.5°119.9°
C31C41C51C61146.1°177.6°
C31C41O41H7114.1°120.1°
C41C31C21H361.7°62.9°
C41C31O31H659.8°179.6°
C31C41O41H8180.0°59.9°
C31C41C51H9100.9°62.4°
C41C51C61H9112.9°120.0°
C51C41O41H7115.3°120.2°
C41C51C61C71165.2°180.0°
C41C51C61O6A71.6°60.0°
C51C41C31H5164.8°176.9°
C51C41O41H849.4°179.6°
C41C51C61H1045.0°60.0°
C61C51C41O4116.6°57.7°
C51C61C71O6A120.1°120.0°
C51C61C71H10120.4°120.0°
C51C61C71O71146.9°175.0°
C51C61O6AH10116.2°120.0°
C61C51C41H799.5°62.5°
C51C61C71H1193.8°65.0°
C51C61C71H1227.5°55.0°
C51C61O6AH14180.0°60.0°
O41C41C31H533.9°56.9°
O41C41C51H9129.6°177.7°
C61C71O71H11119.3°120.1°
C61C71O71H12119.4°119.9°
C71C61O6AH10118.9°120.0°
C71C61C51H981.9°60.0°
C61C71H11H12121.9°120.0°
C61C71O71H13180.0°180.0°
C71C61O6AH1455.1°60.0°
O71C71C61O6A93.0°65.0°
O71C71C61H1026.5°54.9°
O71C71H11H12121.9°120.0°
O6AC61C51H941.3°60.0°
O6AC61C71H1126.3°55.0°
O6AC61C71H12147.6°175.0°
H2C11C21H3163.9°177.7°
H3C21O21H445.2°60.1°
H3C21C31H556.2°56.9°
H5C31O31H659.4°60.2°
H5C31C41H780.9°63.2°
H7C41O41H865.9°60.2°
H7C41C51H913.6°57.5°
H9C51C61H10157.9°180.0°
H10C61C71H11145.8°175.0°
H10C61C71H1292.9°65.0°
H10C61O6AH1463.8°180.0°
H11C71O71H1360.7°59.9°
H12C71O71H1360.6°60.1°
H16C5'C4'H1864.8°174.3°
H17C5'C4'H1854.9°65.7°
H18C4'C3'H19127.6°146.4°
H19C3'O3'H2055.4°57.5°
H19C3'C2'H2130.3°0.1°
H21C2'O2'H2258.4°57.3°
H21C2'C1'H23173.8°146.6°

222415

PDB entries from 2024-07-10

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