GYP

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	C2	sing	1.53Å	1.53Å
C1	O1	sing	1.43Å	1.44Å
C1	O5	sing	1.43Å	1.43Å
C1	H1	sing	1.09Å	1.10Å
C2	C3	sing	1.53Å	1.53Å
C2	O2	sing	1.43Å	1.44Å
C2	H2	sing	1.09Å	1.10Å
C3	C4	sing	1.53Å	1.53Å
C3	O3	sing	1.43Å	1.44Å
C3	H3	sing	1.09Å	1.10Å
C4	C5	sing	1.53Å	1.53Å
C4	O4	sing	1.43Å	1.43Å
C4	H4	sing	1.09Å	1.10Å
C5	C6	sing	1.53Å	1.52Å
C5	O5	sing	1.43Å	1.43Å
C5	H5	sing	1.09Å	1.10Å
C6	O6	sing	1.43Å	1.43Å
C6	H61	sing	1.09Å	1.10Å
C6	H62	sing	1.09Å	1.10Å
C7	O1	sing	1.43Å	1.44Å
C7	H7C1	sing	1.09Å	1.10Å
C7	H7C2	sing	1.09Å	1.10Å
C7	H7C3	sing	1.09Å	1.10Å
O2	HO2	sing	0.97Å	0.99Å
O3	HO3	sing	0.97Å	0.99Å
O4	HO4	sing	0.97Å	0.99Å
O6	HO6	sing	0.97Å	0.99Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C2	C1	O1	111.2°	109.4°
C2	C1	O5	109.3°	109.7°
C2	C1	H1	108.8°	109.4°
C1	C2	C3	111.1°	109.1°
C1	C2	O2	110.7°	109.6°
C1	C2	H2	107.5°	109.5°
O1	C1	O5	110.5°	109.4°
O1	C1	H1	107.5°	109.5°
C1	O1	C7	112.6°	106.8°
O5	C1	H1	109.5°	109.4°
C1	O5	C5	113.9°	107.6°
C3	C2	O2	109.3°	109.6°
C3	C2	H2	109.0°	109.5°
C2	C3	C4	109.9°	108.7°
C2	C3	O3	109.5°	109.8°
C2	C3	H3	109.4°	109.6°
O2	C2	H2	109.3°	109.5°
C2	O2	HO2	109.5°	106.8°
C4	C3	O3	110.3°	109.6°
C4	C3	H3	108.6°	109.6°
C3	C4	C5	111.2°	109.0°
C3	C4	O4	108.5°	109.7°
C3	C4	H4	108.8°	109.6°
O3	C3	H3	109.1°	109.6°
C3	O3	HO3	109.5°	106.8°
C5	C4	O4	108.7°	109.6°
C5	C4	H4	108.5°	109.5°
C4	C5	C6	111.4°	109.3°
C4	C5	O5	111.4°	109.8°
C4	C5	H5	106.7°	109.4°
O4	C4	H4	111.2°	109.5°
C4	O4	HO4	109.5°	106.9°
C6	C5	O5	109.0°	109.4°
C6	C5	H5	109.1°	109.4°
C5	C6	O6	109.6°	109.5°
C5	C6	H61	109.4°	109.5°
C5	C6	H62	109.4°	109.5°
O5	C5	H5	109.1°	109.5°
O6	C6	H61	109.5°	109.5°
O6	C6	H62	109.4°	109.5°
C6	O6	HO6	109.5°	106.8°
H61	C6	H62	109.5°	109.4°
O1	C7	H7C1	109.5°	109.4°
O1	C7	H7C2	109.5°	109.4°
O1	C7	H7C3	109.5°	109.5°
H7C1	C7	H7C2	109.4°	109.5°
H7C1	C7	H7C3	109.5°	109.4°
H7C2	C7	H7C3	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C2	C1	O1	O5	121.5°	120.3°
C2	C1	O1	H1	119.0°	119.9°
C2	C1	O5	H1	119.1°	120.0°
C1	C2	C3	O2	122.4°	119.9°
C1	C2	C3	H2	118.2°	119.9°
C1	C2	O2	H2	118.2°	120.2°
C1	C2	C3	C4	53.7°	53.7°
C1	C2	C3	O3	175.0°	173.6°
C1	C2	C3	H3	65.5°	66.0°
C2	C1	O5	C5	60.3°	67.6°
C2	C1	O1	C7	171.9°	179.8°
C1	C2	O2	HO2	37.9°	60.3°
O1	C1	O5	H1	118.3°	119.9°
O1	C1	C2	C3	65.0°	58.8°
O1	C1	C2	O2	56.6°	61.2°
O1	C1	C2	H2	175.9°	178.7°
O1	C1	O5	C5	62.3°	52.5°
C1	O1	C7	H7C1	80.3°	180.0°
C1	O1	C7	H7C2	39.7°	60.1°
C1	O1	C7	H7C3	159.6°	60.0°
O5	C1	C2	C3	57.3°	61.3°
O5	C1	C2	O2	178.8°	178.7°
O5	C1	C2	H2	61.8°	58.6°
C1	O5	C5	C4	58.6°	67.7°
C1	O5	C5	C6	178.0°	172.3°
C1	O5	C5	H5	58.9°	52.5°
O5	C1	O1	C7	66.6°	59.9°
H1	C1	C2	C3	176.8°	178.7°
H1	C1	C2	O2	61.6°	58.8°
H1	C1	C2	H2	57.7°	61.4°
H1	C1	O5	C5	179.4°	172.4°
H1	C1	O1	C7	52.9°	59.9°
C3	C2	O2	H2	119.2°	120.2°
C2	C3	C4	O3	120.8°	120.0°
C2	C3	C4	H3	119.7°	119.7°
C2	C3	O3	H3	119.7°	120.4°
C2	C3	C4	C5	51.0°	53.7°
C2	C3	C4	O4	170.4°	173.6°
C2	C3	C4	H4	68.5°	66.2°
C3	C2	O2	HO2	160.6°	180.0°
C2	C3	O3	HO3	139.9°	60.7°
O2	C2	C3	C4	176.1°	173.7°
O2	C2	C3	O3	62.6°	66.5°
O2	C2	C3	H3	56.9°	53.9°
H2	C2	C3	C4	64.5°	66.2°
H2	C2	C3	O3	56.8°	53.7°
H2	C2	C3	H3	176.3°	174.1°
H2	C2	O2	HO2	80.2°	59.8°
C4	C3	O3	H3	119.2°	120.3°
C3	C4	C5	O4	119.3°	120.0°
C3	C4	C5	H4	119.6°	119.9°
C3	C4	O4	H4	119.6°	120.2°
C3	C4	C5	C6	174.8°	178.7°
C3	C4	C5	O5	52.9°	61.3°
C3	C4	C5	H5	66.1°	58.9°
C4	C3	O3	HO3	18.8°	180.0°
C3	C4	O4	HO4	174.1°	60.4°
O3	C3	C4	C5	171.8°	173.7°
O3	C3	C4	O4	68.8°	66.4°
O3	C3	C4	H4	52.3°	53.8°
H3	C3	C4	C5	68.7°	66.1°
H3	C3	C4	O4	50.7°	53.9°
H3	C3	C4	H4	171.8°	174.1°
H3	C3	O3	HO3	100.4°	59.7°
C5	C4	O4	H4	119.4°	120.2°
C4	C5	C6	O5	123.3°	120.3°
C4	C5	C6	H5	117.6°	119.8°
C4	C5	O5	H5	117.5°	120.1°
C4	C5	C6	O6	70.1°	179.7°
C4	C5	C6	H61	169.8°	59.7°
C4	C5	C6	H62	49.8°	60.3°
C5	C4	O4	HO4	64.9°	180.0°
O4	C4	C5	C6	65.8°	58.7°
O4	C4	C5	O5	172.2°	178.7°
O4	C4	C5	H5	53.2°	61.1°
H4	C4	C5	C6	55.2°	61.4°
H4	C4	C5	O5	66.7°	58.6°
H4	C4	C5	H5	174.2°	178.8°
H4	C4	O4	HO4	54.5°	59.8°
C6	C5	O5	H5	119.1°	119.9°
C5	C6	O6	H61	120.0°	120.0°
C5	C6	O6	H62	119.9°	120.0°
C5	C6	H61	H62	119.9°	120.0°
C5	C6	O6	HO6	159.2°	180.0°
O5	C5	C6	O6	53.2°	60.0°
O5	C5	C6	H61	66.9°	179.9°
O5	C5	C6	H62	173.1°	60.0°
H5	C5	C6	O6	172.3°	59.9°
H5	C5	C6	H61	52.3°	60.1°
H5	C5	C6	H62	67.8°	179.9°
O6	C6	H61	H62	119.9°	120.0°
H61	C6	O6	HO6	80.8°	60.0°
H62	C6	O6	HO6	39.2°	60.0°
O1	C7	H7C1	H7C2	120.0°	119.9°
O1	C7	H7C1	H7C3	120.0°	120.0°
O1	C7	H7C2	H7C3	120.0°	120.1°
H7C1	C7	H7C2	H7C3	120.0°	120.0°

Definition date:	2003-03-06
Last modified:	2020-07-17
Release status:	REL
Processing site:	EBI
Derived from:	1HKD