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SummaryGeometryRelated PDB entries

GYO

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C04N05doub1.30Å1.36ÅAromatic
C04N03sing1.36Å1.36ÅAromatic
N05C01sing1.36Å1.33ÅAromatic
N03C02sing1.38Å1.32ÅAromatic
C01C02doub1.41Å1.39ÅAromatic
C01C06sing1.40Å1.58ÅAromatic
C02C09sing1.38Å1.57ÅAromatic
C06C07doub1.36Å1.51ÅAromatic
C09C08doub1.39Å1.52ÅAromatic
C07C08sing1.40Å1.49ÅAromatic
C08C10sing1.48Å1.55Å
C10O12doub1.22Å1.19Å
C10N11sing1.35Å1.47Å
C23O22sing1.43Å1.42Å
C13N11sing1.47Å1.48Å
C13C14sing1.53Å1.56Å
C13C15sing1.53Å1.52Å
O22C21sing1.36Å1.41Å
C14C15sing1.53Å1.51Å
C14C16sing1.51Å1.55Å
C21C16doub1.39Å1.53ÅAromatic
C21C20sing1.39Å1.54ÅAromatic
C16C17sing1.38Å1.54ÅAromatic
C20C19doub1.38Å1.54ÅAromatic
C17C18doub1.38Å1.53ÅAromatic
C19C18sing1.38Å1.54ÅAromatic
C04H1sing1.08Å1.08Å
C06H2sing1.08Å1.08Å
C07H3sing1.08Å1.08Å
C09H4sing1.08Å1.08Å
C13H5sing1.09Å1.10Å
C14H6sing1.09Å1.10Å
C15H7sing1.09Å1.10Å
C15H8sing1.09Å1.10Å
C17H9sing1.08Å1.08Å
C18H10sing1.08Å1.08Å
C19H11sing1.08Å1.08Å
C20H12sing1.08Å1.08Å
C23H13sing1.09Å1.10Å
C23H14sing1.09Å1.10Å
C23H15sing1.09Å1.10Å
N03H16sing0.97Å1.00Å
N11H18sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
N05C04N03108.3°110.1°
C04N05C01107.7°109.7°
N05C04H1125.9°124.9°
C04N03C02107.9°107.3°
N03C04H1125.9°124.9°
C04N03H16126.0°126.3°
N05C01C02108.1°106.9°
N05C01C06131.2°133.4°
N03C02C01108.0°106.0°
N03C02C09131.8°134.0°
C02N03H16126.0°126.4°
C02C01C06120.8°119.7°
C01C02C09120.2°120.0°
C01C06C07119.3°120.1°
C01C06H2120.3°120.0°
C02C09C08120.3°119.5°
C02C09H4119.9°120.3°
C06C07C08120.6°120.5°
C07C06H2120.3°120.0°
C06C07H3119.8°119.8°
C09C08C07118.8°120.1°
C09C08C10124.3°119.9°
C08C09H4119.9°120.2°
C07C08C10116.8°120.0°
C08C07H3119.7°119.7°
C08C10O12116.1°120.0°
C08C10N11126.2°120.0°
O12C10N11117.8°120.0°
C10N11C13124.8°120.0°
C10N11H18117.6°120.0°
C23O22C21111.5°117.0°
O22C23H13109.5°109.5°
O22C23H14109.5°109.5°
O22C23H15109.5°109.5°
N11C13C14127.6°117.5°
N11C13C15111.6°117.5°
N11C13H5115.5°115.6°
C13N11H18117.6°120.0°
C14C13C1558.7°60.0°
C13C14C1559.1°60.0°
C13C14C16144.3°117.5°
C14C13H5114.1°117.5°
C13C14H6106.9°117.5°
C13C15C1462.2°60.0°
C15C13H5114.9°117.5°
C13C15H7119.6°117.4°
C13C15H8119.6°117.5°
O22C21C16119.0°120.1°
O22C21C20121.7°120.1°
C15C14C16118.9°117.4°
C15C14H6107.6°117.5°
C14C15H7119.6°117.5°
C14C15H8119.6°117.6°
C14C16C21118.3°120.0°
C14C16C17120.9°120.1°
C16C14H6107.1°115.6°
C16C21C20119.3°119.8°
C21C16C17120.7°120.0°
C21C20C19120.0°120.0°
C21C20H12120.0°120.0°
C16C17C18120.3°120.1°
C16C17H9119.8°120.0°
C20C19C18120.4°120.0°
C20C19H11119.8°120.0°
C19C20H12120.0°120.0°
C17C18C19119.2°120.1°
C18C17H9119.9°119.9°
C17C18H10120.4°120.0°
C19C18H10120.4°119.9°
C18C19H11119.8°120.0°
H7C15H8109.5°115.6°
H13C23H14109.5°109.5°
H13C23H15109.5°109.4°
H14C23H15109.4°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
N05C04N03H1180.0°179.5°
N05C04N03C021.2°0.3°
C04N05C01C020.2°0.4°
C04N05C01C06179.5°179.9°
N05C04N03H16178.9°179.9°
N03C04N05C010.8°0.4°
C04N03C02H16180.0°179.8°
C04N03C02C011.0°0.0°
C04N03C02C09179.9°180.0°
N05C01C02N030.5°0.2°
N05C01C02C06179.4°179.8°
N05C01C02C09179.7°179.8°
N05C01C06C07179.9°179.7°
C01N05C04H1179.2°179.9°
N05C01C06H20.1°0.3°
N03C02C01C09179.2°180.0°
N03C02C01C06178.9°180.0°
N03C02C09C08178.4°180.0°
C02N03C04H1178.9°179.8°
N03C02C09H41.6°0.0°
C02C01C06C070.9°0.0°
C01C02C09C080.6°0.0°
C02C01C06H2179.1°180.0°
C01C02C09H4179.4°180.0°
C01C02N03H16179.0°179.8°
C06C01C02C090.3°0.0°
C01C06C07H2180.0°180.0°
C01C06C07C081.7°0.0°
C01C06C07H3178.3°180.0°
C02C09C08H4180.0°180.0°
C02C09C08C071.3°0.0°
C02C09C08C10179.0°180.0°
C09C02N03H160.1°0.2°
C06C07C08C091.9°0.0°
C06C07C08H3180.0°180.0°
C06C07C08C10179.8°180.0°
C09C08C07C10177.9°179.9°
C09C08C10O12159.7°0.1°
C09C08C10N1118.9°180.0°
C09C08C07H3178.1°180.0°
C07C08C10O1218.0°180.0°
C07C08C10N11163.4°0.0°
C08C07C06H2178.3°180.0°
C07C08C09H4178.7°180.0°
C08C10O12N11178.7°180.0°
C08C10N11C132.3°180.0°
C10C08C07H30.2°0.0°
C10C08C09H41.0°0.0°
C08C10N11H18177.7°0.0°
O12C10N11C13179.1°0.0°
O12C10N11H180.8°180.0°
C10N11C13H18180.0°180.0°
C10N11C13C14179.0°155.0°
C10N11C13C15112.5°136.4°
C10N11C13H521.1°9.3°
C23O22C21C16132.5°180.0°
C23O22C21C2047.8°0.2°
O22C23H13H14120.0°120.1°
O22C23H13H15120.0°120.0°
O22C23H14H15120.0°120.0°
N11C13C14C1594.4°107.5°
N11C13C14H5160.1°145.0°
N11C13C15H5134.0°145.0°
N11C13C14C163.2°0.0°
N11C13C14H6164.9°145.0°
N11C13C15H7128.1°145.0°
N11C13C15H811.8°0.1°
C14C13C15H5104.2°107.5°
C13C14C15C16138.6°107.5°
C13C14C15H699.6°107.5°
C13C14C16H6161.7°145.7°
C13C14C16C21107.7°119.8°
C13C14C16C1775.2°60.0°
C14C13C15H7110.1°107.5°
C14C13C15H8110.1°107.6°
C14C13N11H181.0°25.0°
C13C15H7H8143.6°145.6°
C15C13N11H1867.5°43.6°
O22C21C16C141.5°0.0°
O22C21C16C20179.7°179.8°
O22C21C16C17178.6°179.7°
O22C21C20C19179.7°179.7°
O22C21C20H120.3°0.1°
C21O22C23H13180.0°180.0°
C21O22C23H1460.0°59.9°
C21O22C23H1560.0°60.1°
C15C14C16H6122.0°145.7°
C15C14C16C21176.0°171.6°
C15C14C16C171.1°8.6°
C14C15H7H8143.6°145.8°
C14C16C21C17177.1°179.8°
C14C16C21C20178.7°179.7°
C14C16C17C18179.2°180.0°
C16C14C13H5156.9°145.0°
C16C14C15H7111.3°145.1°
C16C14C15H828.6°0.0°
C14C16C17H90.8°0.0°
C16C21C20C190.5°0.5°
C21C16C17C182.2°0.2°
C21C16C14H653.9°25.9°
C21C16C17H9177.8°179.8°
C16C21C20H12179.4°179.7°
C20C21C16C171.6°0.5°
C21C20C19H12180.0°179.8°
C21C20C19C180.0°0.2°
C21C20C19H11180.0°179.8°
C16C17C18H9180.0°180.0°
C16C17C18C191.7°0.1°
C17C16C14H6123.1°154.3°
C16C17C18H10178.4°179.9°
C20C19C18C170.6°0.1°
C20C19C18H11180.0°180.0°
C20C19C18H10179.5°179.9°
C17C18C19H10180.0°179.9°
C17C18C19H11179.5°180.0°
C19C18C17H9178.4°180.0°
C18C19C20H12180.0°180.0°
H1C04N03H161.1°0.4°
H2C06C07H31.7°0.0°
H5C13C14H64.8°0.0°
H5C13C15H75.9°0.0°
H5C13C15H8145.7°145.0°
H5C13N11H18158.9°170.7°
H6C14C15H710.5°0.1°
H6C14C15H8150.4°145.0°
H9C17C18H101.6°0.1°
H10C18C19H110.5°0.1°
H11C19C20H120.0°0.0°
H13C23H14H15120.0°119.9°

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PDB entries from 2024-07-17

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