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Summary Geometry Related PDB entries

GXV

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O1	C1	doub	1.21Å	1.44Å
C1	C2	sing	1.51Å	1.51Å
O2	C2	sing	1.43Å	1.42Å
C2	C3	sing	1.53Å	1.53Å
O3	C3	sing	1.43Å	1.45Å
O3	HO3	sing	0.97Å	0.95Å
C3	H31	sing	1.09Å	1.10Å
C3	H32	sing	1.09Å	1.10Å
C2	H2	sing	1.09Å	1.10Å
O2	HO2	sing	0.97Å	0.95Å
C1	H1	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1	C1	C2	118.2°	120.0°
O1	C1	H1	120.9°	120.0°
C1	C2	O2	102.6°	109.5°
C1	C2	C3	112.5°	109.5°
C1	C2	H2	109.4°	109.5°
C2	C1	H1	120.9°	120.0°
O2	C2	C3	112.6°	109.5°
O2	C2	H2	110.6°	109.5°
C2	O2	HO2	109.5°	114.0°
C2	C3	O3	112.3°	109.5°
C2	C3	H31	108.8°	109.5°
C2	C3	H32	108.8°	109.4°
C3	C2	H2	109.1°	109.4°
C3	O3	HO3	109.5°	114.0°
O3	C3	H31	108.8°	109.5°
O3	C3	H32	108.8°	109.5°
H31	C3	H32	109.4°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1	C1	C2	H1	180.0°	180.0°
O1	C1	C2	O2	139.1°	0.0°
O1	C1	C2	C3	99.7°	120.0°
O1	C1	C2	H2	21.6°	120.0°
C1	C2	O2	C3	121.1°	120.0°
C1	C2	O2	H2	116.6°	120.0°
C1	C2	C3	H2	121.5°	120.0°
C1	C2	C3	O3	35.2°	175.0°
C1	C2	C3	H31	85.2°	55.0°
C1	C2	C3	H32	155.7°	65.0°
C1	C2	O2	HO2	180.0°	60.0°
O2	C2	C3	H2	123.2°	120.0°
O2	C2	C3	O3	80.0°	64.9°
O2	C2	C3	H31	159.6°	175.0°
O2	C2	C3	H32	40.4°	55.0°
O2	C2	C1	H1	40.9°	180.0°
C2	C3	O3	H31	120.4°	120.0°
C2	C3	O3	H32	120.4°	119.9°
C2	C3	O3	HO3	180.0°	180.0°
C2	C3	H31	H32	118.7°	120.0°
C3	C2	O2	HO2	58.9°	60.1°
C3	C2	C1	H1	80.2°	60.0°
O3	C3	H31	H32	118.7°	120.0°
O3	C3	C2	H2	156.8°	55.0°
HO3	O3	C3	H31	59.6°	60.0°
HO3	O3	C3	H32	59.6°	60.0°
H31	C3	C2	H2	36.4°	65.0°
H32	C3	C2	H2	82.8°	175.0°
H2	C2	O2	HO2	63.4°	180.0°
H2	C2	C1	H1	158.4°	60.0°

222415

PDB entries from 2024-07-10

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