GX1

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
OP2	P	doub	1.48Å	1.60Å
O5'	P	sing	1.61Å	1.59Å
P	OP1	sing	1.61Å	1.48Å
P	N4	sing	1.68Å	1.63Å
S	C8'	sing	1.81Å	1.83Å
S	HS	sing	1.34Å	1.30Å
C2	N1	sing	1.36Å	1.40Å
N1	C6	sing	1.35Å	1.39Å
N1	HN1	sing	0.97Å	1.00Å
N2	C2	sing	1.37Å	1.33Å
N3	C2	doub	1.31Å	1.34Å
N2	HN2	sing	0.97Å	1.00Å
N2	HN2A	sing	0.97Å	1.00Å
N3	C4	sing	1.34Å	1.34Å
N9	C4	sing	1.37Å	1.33Å	Aromatic
C4	C5	doub	1.40Å	1.39Å	Aromatic
N4	C7'	sing	1.47Å	1.47Å
N4	HN4	sing	1.01Å	1.00Å
C5	C6	sing	1.41Å	1.39Å
C5	N7	sing	1.36Å	1.33Å	Aromatic
C6	O6	doub	1.22Å	1.23Å
C8	N7	doub	1.30Å	1.33Å	Aromatic
N9	C8	sing	1.36Å	1.34Å	Aromatic
C8	H8	sing	1.08Å	1.08Å
C1'	N9	sing	1.47Å	1.49Å
C2'	C1'	sing	1.55Å	1.54Å
C1'	O4'	sing	1.44Å	1.46Å
C1'	H1'	sing	1.09Å	1.10Å
C2'	C3'	sing	1.55Å	1.52Å
C2'	H2'	sing	1.09Å	1.10Å
C2'	H2'A	sing	1.09Å	1.10Å
O3'	C3'	sing	1.43Å	1.43Å
C3'	C4'	sing	1.55Å	1.53Å
C3'	H3'	sing	1.09Å	1.10Å
O3'	HO3'	sing	0.97Å	0.95Å
O4'	C4'	sing	1.45Å	1.44Å
C4'	C5'	sing	1.53Å	1.52Å
C4'	H4'	sing	1.09Å	1.10Å
C5'	O5'	sing	1.43Å	1.41Å
C5'	H5'	sing	1.09Å	1.10Å
C5'	H5'A	sing	1.09Å	1.10Å
C8'	C7'	sing	1.53Å	1.53Å
C7'	H7'	sing	1.09Å	1.10Å
C7'	H7'A	sing	1.09Å	1.10Å
C8'	H8'	sing	1.09Å	1.10Å
C8'	H8'A	sing	1.09Å	1.10Å
OP1	HOP1	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
OP2	P	O5'	102.1°	109.5°
OP2	P	OP1	107.4°	109.5°
OP2	P	N4	119.3°	109.5°
O5'	P	OP1	107.5°	109.5°
O5'	P	N4	109.2°	109.5°
P	O5'	C5'	115.8°	123.0°
OP1	P	N4	110.4°	109.5°
P	OP1	HOP1	109.5°	114.0°
P	N4	C7'	121.7°	111.0°
P	N4	HN4	105.6°	111.0°
C8'	S	HS	102.0°	103.0°
S	C8'	C7'	113.5°	109.5°
S	C8'	H8'	108.2°	109.5°
S	C8'	H8'A	108.2°	109.5°
C2	N1	C6	119.1°	120.3°
C2	N1	HN1	120.4°	119.9°
N1	C2	N2	119.3°	119.0°
N1	C2	N3	120.9°	122.0°
C6	N1	HN1	120.5°	119.8°
N1	C6	C5	118.6°	118.3°
N1	C6	O6	120.3°	120.8°
N2	C2	N3	119.8°	119.1°
C2	N2	HN2	120.0°	120.1°
C2	N2	HN2A	120.0°	120.0°
C2	N3	C4	121.1°	121.1°
HN2	N2	HN2A	120.0°	119.9°
N3	C4	N9	132.4°	134.2°
N3	C4	C5	120.3°	119.7°
N9	C4	C5	107.3°	106.1°
C4	N9	C8	107.7°	107.5°
C4	N9	C1'	125.9°	126.2°
C4	C5	C6	120.1°	118.6°
C4	C5	N7	107.3°	107.3°
C7'	N4	HN4	105.6°	111.0°
N4	C7'	C8'	110.1°	109.5°
N4	C7'	H7'	109.2°	109.5°
N4	C7'	H7'A	109.2°	109.5°
C6	C5	N7	132.6°	134.1°
C5	C6	O6	121.1°	120.9°
C5	N7	C8	108.0°	109.3°
N7	C8	N9	109.8°	109.8°
N7	C8	H8	125.1°	125.1°
N9	C8	H8	125.1°	125.1°
C8	N9	C1'	126.3°	126.3°
N9	C1'	C2'	108.0°	110.4°
N9	C1'	O4'	113.3°	110.4°
N9	C1'	H1'	106.8°	110.4°
C2'	C1'	O4'	105.9°	104.8°
C2'	C1'	H1'	114.1°	110.5°
C1'	C2'	C3'	104.4°	104.1°
C1'	C2'	H2'	111.2°	110.5°
C1'	C2'	H2'A	111.2°	110.6°
O4'	C1'	H1'	108.9°	110.4°
C1'	O4'	C4'	105.8°	105.3°
C3'	C2'	H2'	111.2°	110.5°
C3'	C2'	H2'A	111.2°	110.5°
C2'	C3'	O3'	108.2°	110.5°
C2'	C3'	C4'	102.7°	104.0°
C2'	C3'	H3'	114.6°	110.5°
H2'	C2'	H2'A	107.7°	110.5°
O3'	C3'	C4'	109.6°	110.5°
O3'	C3'	H3'	108.3°	110.6°
C3'	O3'	HO3'	109.5°	114.0°
C4'	C3'	H3'	113.3°	110.5°
C3'	C4'	O4'	102.9°	104.8°
C3'	C4'	C5'	113.9°	110.4°
C3'	C4'	H4'	109.5°	110.4°
O4'	C4'	C5'	104.3°	110.4°
O4'	C4'	H4'	118.3°	110.4°
C5'	C4'	H4'	108.1°	110.3°
C4'	C5'	O5'	114.0°	109.5°
C4'	C5'	H5'	108.0°	109.5°
C4'	C5'	H5'A	108.0°	109.5°
O5'	C5'	H5'	108.0°	109.5°
O5'	C5'	H5'A	108.0°	109.5°
H5'	C5'	H5'A	110.9°	109.4°
C8'	C7'	H7'	109.3°	109.4°
C8'	C7'	H7'A	109.2°	109.4°
C7'	C8'	H8'	108.2°	109.4°
C7'	C8'	H8'A	108.1°	109.4°
H7'	C7'	H7'A	109.7°	109.4°
H8'	C8'	H8'A	110.8°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
OP2	P	O5'	OP1	112.9°	120.0°
OP2	P	O5'	N4	127.3°	120.0°
OP2	P	OP1	N4	131.7°	120.0°
OP2	P	N4	C7'	127.1°	180.0°
OP2	P	N4	HN4	113.0°	56.1°
OP2	P	O5'	C5'	56.5°	50.0°
OP2	P	OP1	HOP1	0.0°	180.0°
O5'	P	OP1	N4	119.1°	120.0°
O5'	P	N4	C7'	116.1°	60.0°
O5'	P	N4	HN4	3.9°	63.9°
P	O5'	C5'	C4'	172.0°	180.0°
P	O5'	C5'	H5'	68.0°	60.0°
P	O5'	C5'	H5'A	52.0°	60.0°
O5'	P	OP1	HOP1	109.3°	60.0°
OP1	P	N4	C7'	1.9°	60.0°
OP1	P	N4	HN4	121.9°	176.1°
OP1	P	O5'	C5'	56.3°	170.0°
P	N4	C7'	HN4	120.0°	124.0°
N4	P	O5'	C5'	176.2°	70.0°
P	N4	C7'	C8'	74.7°	135.0°
P	N4	C7'	H7'	165.3°	105.0°
P	N4	C7'	H7'A	45.3°	15.0°
N4	P	OP1	HOP1	131.6°	60.0°
S	C8'	C7'	N4	31.6°	180.0°
S	C8'	C7'	H8'	120.0°	120.0°
S	C8'	C7'	H8'A	120.0°	120.1°
S	C8'	C7'	H7'	88.4°	59.9°
S	C8'	C7'	H7'A	151.6°	60.0°
S	C8'	H8'	H8'A	118.4°	120.1°
HS	S	C8'	C7'	180.0°	180.0°
HS	S	C8'	H8'	60.0°	60.0°
HS	S	C8'	H8'A	60.0°	60.0°
C2	N1	C6	HN1	180.0°	179.8°
N1	C2	N2	N3	179.9°	180.0°
N1	C2	N2	HN2	179.9°	0.0°
N1	C2	N2	HN2A	0.1°	180.0°
N1	C2	N3	C4	0.1°	0.0°
C2	N1	C6	C5	0.1°	0.0°
C2	N1	C6	O6	180.0°	179.7°
C6	N1	C2	N2	179.9°	180.0°
C6	N1	C2	N3	0.0°	0.0°
N1	C6	C5	C4	0.1°	0.1°
N1	C6	C5	O6	179.9°	179.6°
N1	C6	C5	N7	179.9°	180.0°
HN1	N1	C2	N2	0.1°	0.3°
HN1	N1	C2	N3	180.0°	179.7°
HN1	N1	C6	C5	179.9°	179.7°
HN1	N1	C6	O6	0.0°	0.1°
C2	N2	HN2	HN2A	180.0°	180.0°
N2	C2	N3	C4	180.0°	180.0°
N3	C2	N2	HN2	0.0°	180.0°
N3	C2	N2	HN2A	180.0°	0.0°
C2	N3	C4	N9	179.7°	180.0°
C2	N3	C4	C5	0.1°	0.1°
N3	C4	N9	C5	179.8°	180.0°
N3	C4	C5	C6	0.0°	0.1°
N3	C4	C5	N7	180.0°	180.0°
N3	C4	N9	C8	179.8°	180.0°
N3	C4	N9	C1'	0.4°	0.0°
N9	C4	C5	C6	179.9°	180.0°
N9	C4	C5	N7	0.1°	0.0°
C4	N9	C8	N7	0.1°	0.0°
C4	N9	C8	C1'	179.7°	180.0°
C4	N9	C8	H8	179.9°	180.0°
C4	N9	C1'	C2'	44.5°	88.2°
C4	N9	C1'	O4'	161.5°	156.4°
C4	N9	C1'	H1'	78.6°	34.2°
C4	C5	C6	N7	180.0°	179.9°
C4	C5	C6	O6	180.0°	179.7°
C4	C5	N7	C8	0.2°	0.0°
C5	C4	N9	C8	0.0°	0.0°
C5	C4	N9	C1'	179.7°	180.0°
N4	C7'	C8'	H7'	120.0°	120.1°
N4	C7'	C8'	H7'A	120.0°	120.0°
N4	C7'	H7'	H7'A	119.7°	120.0°
N4	C7'	C8'	H8'	88.4°	60.0°
N4	C7'	C8'	H8'A	151.6°	59.9°
HN4	N4	C7'	C8'	45.3°	11.0°
HN4	N4	C7'	H7'	74.7°	131.0°
HN4	N4	C7'	H7'A	165.3°	109.0°
C6	C5	N7	C8	179.8°	179.9°
N7	C5	C6	O6	0.0°	0.4°
C5	N7	C8	N9	0.2°	0.0°
C5	N7	C8	H8	179.8°	180.0°
N7	C8	N9	H8	180.0°	180.0°
N7	C8	N9	C1'	179.6°	180.0°
C8	N9	C1'	C2'	135.2°	91.8°
C8	N9	C1'	O4'	18.2°	23.5°
C8	N9	C1'	H1'	101.7°	145.8°
H8	C8	N9	C1'	0.4°	0.0°
N9	C1'	C2'	O4'	121.7°	118.8°
N9	C1'	C2'	H1'	118.6°	122.3°
N9	C1'	O4'	H1'	118.7°	122.3°
N9	C1'	C2'	C3'	118.2°	142.8°
N9	C1'	C2'	H2'	121.8°	98.6°
N9	C1'	C2'	H2'A	1.8°	24.1°
N9	C1'	O4'	C4'	89.1°	159.3°
C2'	C1'	O4'	H1'	123.1°	118.9°
C1'	C2'	C3'	H2'	120.0°	118.6°
C1'	C2'	C3'	H2'A	120.0°	118.7°
C1'	C2'	H2'	H2'A	122.1°	122.7°
C1'	C2'	C3'	O3'	94.4°	118.6°
C1'	C2'	C3'	C4'	21.4°	0.0°
C1'	C2'	C3'	H3'	144.7°	118.6°
C2'	C1'	O4'	C4'	29.2°	40.5°
O4'	C1'	C2'	C3'	3.4°	24.0°
O4'	C1'	C2'	H2'	116.6°	142.6°
O4'	C1'	C2'	H2'A	123.4°	94.7°
C1'	O4'	C4'	C3'	43.0°	40.5°
C1'	O4'	C4'	C5'	76.1°	159.3°
C1'	O4'	C4'	H4'	163.8°	78.4°
H1'	C1'	C2'	C3'	123.2°	94.9°
H1'	C1'	C2'	H2'	3.2°	23.7°
H1'	C1'	C2'	H2'A	116.8°	146.5°
H1'	C1'	O4'	C4'	152.2°	78.4°
C3'	C2'	H2'	H2'A	122.1°	122.6°
C2'	C3'	O3'	C4'	111.3°	114.6°
C2'	C3'	O3'	H3'	124.7°	122.7°
C2'	C3'	C4'	H3'	124.2°	118.6°
C2'	C3'	O3'	HO3'	180.0°	61.5°
C2'	C3'	C4'	O4'	39.6°	23.9°
C2'	C3'	C4'	C5'	72.7°	142.8°
C2'	C3'	C4'	H4'	166.1°	95.0°
H2'	C2'	C3'	O3'	25.5°	0.0°
H2'	C2'	C3'	C4'	141.4°	118.7°
H2'	C2'	C3'	H3'	95.3°	122.8°
H2'A	C2'	C3'	O3'	145.6°	122.7°
H2'A	C2'	C3'	C4'	98.6°	118.7°
H2'A	C2'	C3'	H3'	24.7°	0.1°
O3'	C3'	C4'	H3'	121.0°	122.8°
O3'	C3'	C4'	O4'	75.2°	142.6°
O3'	C3'	C4'	C5'	172.5°	98.6°
O3'	C3'	C4'	H4'	51.4°	23.7°
C4'	C3'	O3'	HO3'	68.8°	176.1°
C3'	C4'	O4'	C5'	119.1°	118.8°
C3'	C4'	O4'	H4'	120.8°	118.9°
C3'	C4'	C5'	H4'	121.9°	122.3°
C3'	C4'	C5'	O5'	74.2°	175.0°
C3'	C4'	C5'	H5'	45.8°	55.0°
C3'	C4'	C5'	H5'A	165.8°	65.0°
H3'	C3'	O3'	HO3'	55.3°	61.2°
H3'	C3'	C4'	O4'	163.7°	94.6°
H3'	C3'	C4'	C5'	51.5°	24.2°
H3'	C3'	C4'	H4'	69.7°	146.4°
O4'	C4'	C5'	H4'	126.7°	122.3°
O4'	C4'	C5'	O5'	174.4°	69.6°
O4'	C4'	C5'	H5'	65.6°	170.4°
O4'	C4'	C5'	H5'A	54.4°	50.4°
C4'	C5'	O5'	H5'	120.0°	120.0°
C4'	C5'	O5'	H5'A	120.0°	120.0°
C4'	C5'	H5'	H5'A	118.1°	120.0°
H4'	C4'	C5'	O5'	47.7°	52.7°
H4'	C4'	C5'	H5'	167.7°	67.3°
H4'	C4'	C5'	H5'A	72.3°	172.7°
O5'	C5'	H5'	H5'A	118.1°	120.0°
C8'	C7'	H7'	H7'A	119.7°	119.9°
C7'	C8'	H8'	H8'A	118.4°	119.9°
H7'	C7'	C8'	H8'	151.6°	60.1°
H7'	C7'	C8'	H8'A	31.6°	180.0°
H7'A	C7'	C8'	H8'	31.6°	180.0°
H7'A	C7'	C8'	H8'A	88.4°	60.1°

Definition date:	2009-09-09
Last modified:	2011-06-04
Release status:	REL
Processing site:	RCSB
Derived from:	3JR4