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Summary Geometry Related PDB entries

GVE

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N	C1	sing	1.47Å	1.45Å
N	H	sing	1.01Å	1.00Å
N	H2	sing	1.01Å	1.00Å
C1	CB	sing	1.53Å	1.54Å
C1	HA1	sing	1.09Å	1.10Å
C1	HA2	sing	1.09Å	1.10Å
CB	CG	sing	1.53Å	1.55Å
CB	HB1	sing	1.09Å	1.10Å
CB	HB2	sing	1.09Å	1.10Å
CG	C	sing	1.51Å	1.52Å
CG	HG1	sing	1.09Å	1.10Å
CG	HG2	sing	1.09Å	1.10Å
C	OXT	sing	1.34Å	1.42Å
C	O	doub	1.21Å	1.25Å
OXT	CH3	sing	1.45Å	1.46Å
CH3	HH31	sing	1.09Å	1.10Å
CH3	HH32	sing	1.09Å	1.10Å
CH3	HH33	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C1	N	H	109.5°	111.0°
C1	N	H2	109.5°	110.9°
N	C1	CB	110.4°	109.4°
N	C1	HA1	109.1°	109.5°
N	C1	HA2	109.2°	109.5°
H	N	H2	109.5°	111.0°
CB	C1	HA1	109.2°	109.4°
CB	C1	HA2	109.1°	109.5°
C1	CB	CG	111.7°	109.5°
C1	CB	HB1	108.8°	109.4°
C1	CB	HB2	108.7°	109.5°
HA1	C1	HA2	109.8°	109.5°
CG	CB	HB1	108.7°	109.5°
CG	CB	HB2	108.7°	109.5°
CB	CG	C	117.3°	109.5°
CB	CG	HG1	106.9°	109.4°
CB	CG	HG2	106.9°	109.5°
HB1	CB	HB2	110.2°	109.5°
C	CG	HG1	106.9°	109.4°
C	CG	HG2	106.9°	109.5°
CG	C	OXT	118.5°	120.0°
CG	C	O	119.7°	120.0°
HG1	CG	HG2	111.9°	109.5°
OXT	C	O	121.8°	120.1°
C	OXT	CH3	111.5°	117.0°
OXT	CH3	HH31	109.5°	109.5°
OXT	CH3	HH32	109.4°	109.5°
OXT	CH3	HH33	109.5°	109.5°
HH31	CH3	HH32	109.5°	109.5°
HH31	CH3	HH33	109.5°	109.5°
HH32	CH3	HH33	109.5°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C1	N	H	H2	120.0°	123.9°
N	C1	CB	HA1	120.0°	120.0°
N	C1	CB	HA2	120.0°	120.0°
N	C1	HA1	HA2	119.6°	120.1°
N	C1	CB	CG	75.5°	180.0°
N	C1	CB	HB1	44.5°	60.0°
N	C1	CB	HB2	164.5°	60.0°
H	N	C1	CB	180.0°	56.1°
H	N	C1	HA1	60.0°	176.0°
H	N	C1	HA2	60.0°	63.9°
H2	N	C1	CB	60.0°	180.0°
H2	N	C1	HA1	60.0°	60.1°
H2	N	C1	HA2	180.0°	60.0°
CB	C1	HA1	HA2	119.6°	120.0°
C1	CB	CG	HB1	120.0°	119.9°
C1	CB	CG	HB2	120.0°	120.0°
C1	CB	HB1	HB2	119.1°	120.0°
C1	CB	CG	C	68.9°	180.0°
C1	CB	CG	HG1	51.1°	60.0°
C1	CB	CG	HG2	171.1°	60.0°
HA1	C1	CB	CG	164.5°	60.0°
HA1	C1	CB	HB1	75.5°	180.0°
HA1	C1	CB	HB2	44.5°	60.0°
HA2	C1	CB	CG	44.5°	60.0°
HA2	C1	CB	HB1	164.5°	60.0°
HA2	C1	CB	HB2	75.5°	180.0°
CG	CB	HB1	HB2	119.1°	120.1°
CB	CG	C	HG1	120.0°	119.9°
CB	CG	C	HG2	120.0°	120.1°
CB	CG	HG1	HG2	116.8°	120.0°
CB	CG	C	OXT	124.8°	180.0°
CB	CG	C	O	56.9°	0.1°
HB1	CB	CG	C	171.1°	60.1°
HB1	CB	CG	HG1	68.9°	180.0°
HB1	CB	CG	HG2	51.1°	60.0°
HB2	CB	CG	C	51.1°	60.0°
HB2	CB	CG	HG1	171.1°	60.0°
HB2	CB	CG	HG2	68.9°	180.0°
C	CG	HG1	HG2	116.8°	120.0°
CG	C	OXT	O	178.3°	179.9°
CG	C	OXT	CH3	175.4°	180.0°
HG1	CG	C	OXT	115.2°	60.1°
HG1	CG	C	O	63.1°	120.0°
HG2	CG	C	OXT	4.8°	59.9°
HG2	CG	C	O	176.9°	120.0°
C	OXT	CH3	HH31	180.0°	60.0°
C	OXT	CH3	HH32	60.0°	60.0°
C	OXT	CH3	HH33	60.0°	180.0°
O	C	OXT	CH3	2.9°	0.0°
OXT	CH3	HH31	HH32	120.0°	120.0°
OXT	CH3	HH31	HH33	120.0°	120.0°
OXT	CH3	HH32	HH33	120.0°	120.0°
HH31	CH3	HH32	HH33	120.0°	120.0°

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PDB entries from 2026-02-11

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