GTF
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O3G | PG | doub | 1.48Å | 1.50Å | |
| O1G | PG | sing | 1.61Å | 1.50Å | |
| PG | O2G | sing | 1.61Å | 1.53Å | |
| PG | O3B | sing | 1.61Å | 1.73Å | |
| O3B | PB | sing | 1.61Å | 1.79Å | |
| O1B | PB | doub | 1.48Å | 1.55Å | |
| F2 | C2' | sing | 1.40Å | 1.45Å | |
| C3' | O3' | sing | 1.43Å | 1.37Å | |
| C3' | C2' | sing | 1.55Å | 1.59Å | |
| C3' | C4' | sing | 1.55Å | 1.63Å | |
| O2A | PA | doub | 1.48Å | 1.51Å | |
| PB | O2B | sing | 1.61Å | 1.58Å | |
| PB | O3A | sing | 1.61Å | 1.67Å | |
| C5' | C4' | sing | 1.53Å | 1.59Å | |
| C5' | O5' | sing | 1.43Å | 1.43Å | |
| F1 | C2' | sing | 1.40Å | 1.39Å | |
| C2' | C1' | sing | 1.54Å | 1.32Å | |
| C4' | O4' | sing | 1.44Å | 1.36Å | |
| O5' | PA | sing | 1.61Å | 1.71Å | |
| PA | O3A | sing | 1.61Å | 1.69Å | |
| PA | O1A | sing | 1.61Å | 1.59Å | |
| C1' | O4' | sing | 1.44Å | 1.69Å | |
| C1' | N1 | sing | 1.47Å | 1.53Å | |
| C6 | N1 | sing | 1.36Å | 1.54Å | |
| C6 | C5 | doub | 1.35Å | 1.50Å | |
| N1 | C2 | sing | 1.35Å | 1.56Å | |
| C5 | C4 | sing | 1.41Å | 1.50Å | |
| C2 | O2 | doub | 1.22Å | 1.25Å | |
| C2 | N3 | sing | 1.33Å | 1.53Å | |
| C4 | N3 | doub | 1.33Å | 1.51Å | |
| C4 | N4 | sing | 1.38Å | 1.38Å | |
| N4 | H1 | sing | 0.97Å | 1.00Å | |
| N4 | H2 | sing | 0.97Å | 1.00Å | |
| C5 | H3 | sing | 1.08Å | 1.08Å | |
| C6 | H4 | sing | 1.08Å | 1.08Å | |
| C1' | H5 | sing | 1.09Å | 1.10Å | |
| O1A | H6 | sing | 0.97Å | 0.95Å | |
| O1G | H7 | sing | 0.97Å | 0.95Å | |
| O2B | H8 | sing | 0.97Å | 0.95Å | |
| O2G | H9 | sing | 0.97Å | 0.95Å | |
| C3' | H10 | sing | 1.09Å | 1.10Å | |
| O3' | H11 | sing | 0.97Å | 0.95Å | |
| C4' | H12 | sing | 1.09Å | 1.10Å | |
| C5' | H13 | sing | 1.09Å | 1.10Å | |
| C5' | H14 | sing | 1.09Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O3G | PG | O1G | 99.7° | 109.4° |
| O3G | PG | O2G | 112.9° | 109.5° |
| O3G | PG | O3B | 106.1° | 109.5° |
| O1G | PG | O2G | 116.9° | 109.5° |
| O1G | PG | O3B | 115.2° | 109.5° |
| PG | O1G | H7 | 109.5° | 114.0° |
| O2G | PG | O3B | 105.6° | 109.5° |
| PG | O2G | H9 | 109.5° | 114.0° |
| PG | O3B | PB | 126.8° | 134.0° |
| O3B | PB | O1B | 110.4° | 109.5° |
| O3B | PB | O2B | 107.6° | 109.5° |
| O3B | PB | O3A | 103.0° | 109.5° |
| O1B | PB | O2B | 119.5° | 109.5° |
| O1B | PB | O3A | 111.4° | 109.5° |
| F2 | C2' | C3' | 105.7° | 110.6° |
| F2 | C2' | F1 | 117.5° | 110.5° |
| F2 | C2' | C1' | 113.9° | 110.5° |
| O3' | C3' | C2' | 119.7° | 110.6° |
| O3' | C3' | C4' | 116.0° | 110.5° |
| O3' | C3' | H10 | 109.6° | 110.5° |
| C3' | O3' | H11 | 109.5° | 114.0° |
| C2' | C3' | C4' | 97.3° | 104.1° |
| C3' | C2' | F1 | 113.5° | 110.5° |
| C3' | C2' | C1' | 108.2° | 104.1° |
| C2' | C3' | H10 | 106.7° | 110.5° |
| C3' | C4' | C5' | 113.5° | 110.4° |
| C3' | C4' | O4' | 99.8° | 104.8° |
| C4' | C3' | H10 | 106.3° | 110.6° |
| C3' | C4' | H12 | 108.1° | 110.3° |
| O2A | PA | O5' | 105.5° | 109.4° |
| O2A | PA | O3A | 101.9° | 109.4° |
| O2A | PA | O1A | 99.0° | 109.5° |
| O2B | PB | O3A | 103.5° | 109.5° |
| PB | O2B | H8 | 109.5° | 114.0° |
| PB | O3A | PA | 119.8° | 134.0° |
| C4' | C5' | O5' | 111.4° | 109.5° |
| C5' | C4' | O4' | 114.7° | 110.4° |
| C5' | C4' | H12 | 108.5° | 110.4° |
| C4' | C5' | H13 | 109.0° | 109.5° |
| C4' | C5' | H14 | 109.0° | 109.5° |
| C5' | O5' | PA | 127.7° | 123.0° |
| O5' | C5' | H13 | 109.0° | 109.5° |
| O5' | C5' | H14 | 109.0° | 109.4° |
| F1 | C2' | C1' | 97.9° | 110.5° |
| C2' | C1' | O4' | 101.9° | 104.8° |
| C2' | C1' | N1 | 114.1° | 110.4° |
| C2' | C1' | H5 | 110.6° | 110.5° |
| C4' | O4' | C1' | 109.7° | 105.3° |
| O4' | C4' | H12 | 111.9° | 110.4° |
| O5' | PA | O3A | 101.4° | 109.5° |
| O5' | PA | O1A | 130.6° | 109.5° |
| O3A | PA | O1A | 114.8° | 109.5° |
| PA | O1A | H6 | 109.5° | 114.0° |
| O4' | C1' | N1 | 116.2° | 110.3° |
| O4' | C1' | H5 | 106.0° | 110.4° |
| C1' | N1 | C6 | 123.4° | 119.8° |
| C1' | N1 | C2 | 114.9° | 119.9° |
| N1 | C1' | H5 | 107.7° | 110.4° |
| N1 | C6 | C5 | 121.0° | 119.3° |
| C6 | N1 | C2 | 121.6° | 120.3° |
| N1 | C6 | H4 | 119.5° | 120.3° |
| C6 | C5 | C4 | 116.3° | 119.0° |
| C6 | C5 | H3 | 121.8° | 120.6° |
| C5 | C6 | H4 | 119.5° | 120.4° |
| N1 | C2 | O2 | 123.8° | 119.5° |
| N1 | C2 | N3 | 116.4° | 121.1° |
| C5 | C4 | N3 | 125.5° | 119.6° |
| C5 | C4 | N4 | 117.7° | 120.2° |
| C4 | C5 | H3 | 121.9° | 120.5° |
| O2 | C2 | N3 | 119.8° | 119.4° |
| C2 | N3 | C4 | 119.3° | 120.7° |
| N3 | C4 | N4 | 116.8° | 120.2° |
| C4 | N4 | H1 | 120.0° | 120.0° |
| C4 | N4 | H2 | 120.0° | 120.0° |
| H1 | N4 | H2 | 120.0° | 120.0° |
| H13 | C5' | H14 | 109.4° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O3G | PG | O1G | O2G | 122.0° | 120.0° |
| O3G | PG | O1G | O3B | 113.1° | 120.0° |
| O3G | PG | O2G | O3B | 115.6° | 120.0° |
| O3G | PG | O3B | PB | 71.1° | 45.0° |
| O3G | PG | O1G | H7 | 0.0° | 60.0° |
| O3G | PG | O2G | H9 | 0.0° | 180.0° |
| O1G | PG | O2G | O3B | 129.6° | 120.0° |
| O1G | PG | O3B | PB | 179.6° | 165.0° |
| O1G | PG | O2G | H9 | 114.9° | 60.0° |
| O2G | PG | O3B | PB | 49.0° | 75.1° |
| O2G | PG | O1G | H7 | 122.0° | 60.0° |
| PG | O3B | PB | O1B | 87.0° | 40.0° |
| PG | O3B | PB | O2B | 45.1° | 80.0° |
| PG | O3B | PB | O3A | 154.0° | 160.0° |
| O3B | PG | O1G | H7 | 113.1° | 180.0° |
| O3B | PG | O2G | H9 | 115.6° | 60.0° |
| O3B | PB | O1B | O2B | 125.5° | 120.0° |
| O3B | PB | O1B | O3A | 113.8° | 120.0° |
| O3B | PB | O2B | O3A | 108.6° | 120.0° |
| O3B | PB | O3A | PA | 41.8° | 165.0° |
| O3B | PB | O2B | H8 | 126.8° | 60.0° |
| O1B | PB | O2B | O3A | 124.5° | 120.0° |
| O1B | PB | O3A | PA | 76.5° | 45.1° |
| O1B | PB | O2B | H8 | 0.0° | 180.0° |
| F2 | C2' | C3' | O3' | 157.5° | 122.6° |
| F2 | C2' | C3' | F1 | 130.2° | 122.7° |
| F2 | C2' | C3' | C1' | 122.3° | 118.7° |
| F2 | C2' | C3' | C4' | 76.9° | 118.7° |
| F2 | C2' | F1 | C1' | 122.2° | 122.6° |
| F2 | C2' | C1' | O4' | 90.3° | 94.8° |
| F2 | C2' | C1' | N1 | 35.7° | 24.0° |
| F2 | C2' | C1' | H5 | 157.3° | 146.4° |
| F2 | C2' | C3' | H10 | 32.5° | 0.0° |
| O3' | C3' | C2' | C4' | 125.6° | 118.7° |
| O3' | C3' | C2' | H10 | 125.0° | 122.6° |
| O3' | C3' | C4' | H10 | 122.0° | 122.6° |
| O3' | C3' | C4' | C5' | 153.7° | 98.5° |
| O3' | C3' | C2' | F1 | 27.4° | 0.0° |
| O3' | C3' | C2' | C1' | 80.1° | 118.6° |
| O3' | C3' | C4' | O4' | 83.8° | 142.7° |
| O3' | C3' | C4' | H12 | 33.3° | 23.8° |
| C2' | C3' | C4' | H10 | 109.8° | 118.7° |
| C2' | C3' | C4' | C5' | 78.1° | 142.8° |
| C3' | C2' | F1 | C1' | 113.8° | 114.6° |
| C2' | C3' | C4' | O4' | 44.4° | 23.9° |
| C3' | C2' | C1' | O4' | 26.8° | 24.0° |
| C3' | C2' | C1' | N1 | 152.9° | 142.8° |
| C3' | C2' | C1' | H5 | 85.5° | 94.8° |
| C2' | C3' | O3' | H11 | 180.0° | 61.4° |
| C2' | C3' | C4' | H12 | 161.5° | 94.9° |
| C3' | C4' | C5' | O4' | 113.8° | 115.4° |
| C3' | C4' | C5' | H12 | 120.2° | 122.3° |
| C3' | C4' | C5' | O5' | 164.3° | 175.0° |
| C4' | C3' | C2' | F1 | 152.9° | 118.7° |
| C4' | C3' | C2' | C1' | 45.4° | 0.1° |
| C3' | C4' | O4' | H12 | 114.2° | 118.8° |
| C3' | C4' | O4' | C1' | 31.4° | 40.5° |
| C4' | C3' | O3' | H11 | 63.9° | 176.1° |
| C3' | C4' | C5' | H13 | 75.4° | 55.0° |
| C3' | C4' | C5' | H14 | 44.0° | 65.1° |
| O2A | PA | O3A | PB | 21.3° | 40.1° |
| O2A | PA | O5' | C5' | 26.4° | 55.1° |
| O2A | PA | O5' | O3A | 105.9° | 119.9° |
| O2A | PA | O5' | O1A | 116.8° | 120.0° |
| O2A | PA | O3A | O1A | 105.8° | 120.1° |
| O2A | PA | O1A | H6 | 0.0° | 180.0° |
| O2B | PB | O3A | PA | 153.8° | 75.0° |
| PB | O3A | PA | O5' | 87.5° | 160.0° |
| PB | O3A | PA | O1A | 127.1° | 80.0° |
| O3A | PB | O2B | H8 | 124.6° | 60.0° |
| C4' | C5' | O5' | H13 | 120.3° | 120.0° |
| C4' | C5' | O5' | H14 | 120.3° | 120.0° |
| C5' | C4' | O4' | H12 | 124.2° | 122.4° |
| C4' | C5' | O5' | PA | 98.6° | 179.9° |
| C5' | C4' | O4' | C1' | 90.2° | 159.4° |
| C5' | C4' | C3' | H10 | 31.7° | 24.1° |
| C4' | C5' | H13 | H14 | 119.1° | 120.1° |
| O5' | C5' | C4' | O4' | 50.5° | 69.6° |
| C5' | O5' | PA | O3A | 132.4° | 175.0° |
| C5' | O5' | PA | O1A | 90.4° | 65.0° |
| O5' | C5' | C4' | H12 | 75.5° | 52.7° |
| O5' | C5' | H13 | H14 | 119.1° | 120.0° |
| F1 | C2' | C1' | O4' | 144.8° | 142.6° |
| F1 | C2' | C1' | N1 | 89.1° | 98.6° |
| F1 | C2' | C1' | H5 | 32.5° | 23.8° |
| F1 | C2' | C3' | H10 | 97.6° | 122.6° |
| C2' | C1' | O4' | C4' | 4.4° | 40.6° |
| C2' | C1' | O4' | N1 | 124.7° | 118.8° |
| C2' | C1' | O4' | H5 | 115.8° | 119.0° |
| C2' | C1' | N1 | H5 | 123.2° | 122.4° |
| C2' | C1' | N1 | C6 | 59.2° | 117.9° |
| C2' | C1' | N1 | C2 | 124.2° | 61.8° |
| C1' | C2' | C3' | H10 | 154.8° | 118.8° |
| C4' | O4' | C1' | N1 | 120.2° | 159.3° |
| C4' | O4' | C1' | H5 | 120.2° | 78.4° |
| O4' | C4' | C3' | H10 | 154.1° | 94.7° |
| O4' | C4' | C5' | H13 | 170.8° | 170.4° |
| O4' | C4' | C5' | H14 | 69.8° | 50.3° |
| O5' | PA | O3A | O1A | 145.4° | 120.0° |
| O5' | PA | O1A | H6 | 119.5° | 60.0° |
| PA | O5' | C5' | H13 | 21.7° | 60.0° |
| PA | O5' | C5' | H14 | 141.1° | 60.1° |
| O3A | PA | O1A | H6 | 107.6° | 60.0° |
| O4' | C1' | N1 | H5 | 118.7° | 122.2° |
| O4' | C1' | N1 | C6 | 59.0° | 126.8° |
| O4' | C1' | N1 | C2 | 117.6° | 53.5° |
| C1' | O4' | C4' | H12 | 145.6° | 78.3° |
| C1' | N1 | C6 | C2 | 176.4° | 179.7° |
| C1' | N1 | C6 | C5 | 176.1° | 179.7° |
| C1' | N1 | C2 | O2 | 5.5° | 0.3° |
| C1' | N1 | C2 | N3 | 177.0° | 179.7° |
| C1' | N1 | C6 | H4 | 3.9° | 0.3° |
| N1 | C6 | C5 | H4 | 180.0° | 180.0° |
| N1 | C6 | C5 | C4 | 0.3° | 0.0° |
| C6 | N1 | C2 | O2 | 177.9° | 180.0° |
| C6 | N1 | C2 | N3 | 0.3° | 0.0° |
| N1 | C6 | C5 | H3 | 179.7° | 179.9° |
| C6 | N1 | C1' | H5 | 177.6° | 4.5° |
| C5 | C6 | N1 | C2 | 0.3° | 0.0° |
| C6 | C5 | C4 | H3 | 180.0° | 180.0° |
| C6 | C5 | C4 | N3 | 0.1° | 0.0° |
| C6 | C5 | C4 | N4 | 178.5° | 180.0° |
| N1 | C2 | O2 | N3 | 177.5° | 180.0° |
| N1 | C2 | N3 | C4 | 0.7° | 0.0° |
| C2 | N1 | C6 | H4 | 179.7° | 180.0° |
| C2 | N1 | C1' | H5 | 1.0° | 175.8° |
| C5 | C4 | N3 | C2 | 0.7° | 0.0° |
| C5 | C4 | N3 | N4 | 178.7° | 180.0° |
| C5 | C4 | N4 | H1 | 178.8° | 180.0° |
| C5 | C4 | N4 | H2 | 1.2° | 0.0° |
| C4 | C5 | C6 | H4 | 179.6° | 180.0° |
| O2 | C2 | N3 | C4 | 178.4° | 180.0° |
| C2 | N3 | C4 | N4 | 178.0° | 180.0° |
| N3 | C4 | N4 | H1 | 0.0° | 0.0° |
| N3 | C4 | N4 | H2 | 180.0° | 180.0° |
| N3 | C4 | C5 | H3 | 179.9° | 179.9° |
| C4 | N4 | H1 | H2 | 180.0° | 180.0° |
| N4 | C4 | C5 | H3 | 1.5° | 0.1° |
| H3 | C5 | C6 | H4 | 0.4° | 0.1° |
| H10 | C3' | O3' | H11 | 56.4° | 61.2° |
| H10 | C3' | C4' | H12 | 88.8° | 146.5° |
| H12 | C4' | C5' | H13 | 44.9° | 67.2° |
| H12 | C4' | C5' | H14 | 164.2° | 172.7° |
