GRC
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
N2 | C2 | sing | 1.37Å | 1.36Å | |
C2 | N1 | sing | 1.36Å | 1.38Å | |
C2 | N3 | doub | 1.31Å | 1.33Å | |
N1 | C6 | sing | 1.35Å | 1.39Å | |
N3 | C4 | sing | 1.34Å | 1.33Å | |
C6 | O6 | doub | 1.22Å | 1.23Å | |
C6 | C5 | sing | 1.41Å | 1.40Å | |
C4 | C5 | doub | 1.40Å | 1.36Å | Aromatic |
C4 | N9 | sing | 1.37Å | 1.37Å | Aromatic |
C2' | C1' | sing | 1.54Å | 1.52Å | |
C2' | C3' | sing | 1.54Å | 1.55Å | |
C1' | N9 | sing | 1.46Å | 1.47Å | |
C1' | O4' | sing | 1.44Å | 1.43Å | |
C5 | N7 | sing | 1.36Å | 1.39Å | Aromatic |
N9 | C8 | sing | 1.37Å | 1.37Å | Aromatic |
O3' | C3' | sing | 1.43Å | 1.46Å | |
C3' | C4' | sing | 1.54Å | 1.53Å | |
O4' | C4' | sing | 1.44Å | 1.44Å | |
N7 | C8 | doub | 1.30Å | 1.30Å | Aromatic |
C4' | C5' | sing | 1.53Å | 1.51Å | |
O1B | PB | doub | 1.48Å | 1.49Å | |
C5' | O5' | sing | 1.43Å | 1.43Å | |
O5' | PA | sing | 1.61Å | 1.59Å | |
PB | O3A | sing | 1.61Å | 1.53Å | |
PB | O2B | sing | 1.61Å | 1.47Å | |
PB | C3B | sing | 1.82Å | 1.86Å | |
O3A | PA | sing | 1.61Å | 1.54Å | |
CL1 | C3B | sing | 1.80Å | 1.79Å | |
PA | O2A | doub | 1.48Å | 1.49Å | |
PA | O1A | sing | 1.61Å | 1.49Å | |
C3B | PG | sing | 1.82Å | 1.84Å | |
O3G | PG | doub | 1.48Å | 1.48Å | |
PG | O1G | sing | 1.61Å | 1.51Å | |
PG | O2G | sing | 1.61Å | 1.50Å | |
N1 | H1 | sing | 0.97Å | 1.00Å | |
N2 | H2 | sing | 0.97Å | 1.00Å | |
N2 | H3 | sing | 0.97Å | 1.00Å | |
C8 | H4 | sing | 1.08Å | 1.08Å | |
C1' | H5 | sing | 1.09Å | 1.10Å | |
O1A | H6 | sing | 0.97Å | 0.95Å | |
O1G | H7 | sing | 0.97Å | 0.95Å | |
C2' | H8 | sing | 1.09Å | 1.10Å | |
C2' | H9 | sing | 1.09Å | 1.10Å | |
O2B | H10 | sing | 0.97Å | 0.95Å | |
O2G | H11 | sing | 0.97Å | 0.95Å | |
C3' | H12 | sing | 1.09Å | 1.10Å | |
O3' | H13 | sing | 0.97Å | 0.95Å | |
C3B | H14 | sing | 1.09Å | 1.10Å | |
C4' | H15 | sing | 1.09Å | 1.10Å | |
C5' | H16 | sing | 1.09Å | 1.10Å | |
C5' | H17 | sing | 1.09Å | 1.10Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
N2 | C2 | N1 | 117.4° | 119.0° |
N2 | C2 | N3 | 119.6° | 119.1° |
C2 | N2 | H2 | 120.0° | 120.0° |
C2 | N2 | H3 | 120.0° | 120.0° |
N1 | C2 | N3 | 122.7° | 121.9° |
C2 | N1 | C6 | 124.1° | 120.3° |
C2 | N1 | H1 | 117.9° | 119.9° |
C2 | N3 | C4 | 112.9° | 121.1° |
N1 | C6 | O6 | 121.9° | 120.8° |
N1 | C6 | C5 | 112.5° | 118.4° |
C6 | N1 | H1 | 118.0° | 119.8° |
N3 | C4 | C5 | 128.6° | 119.7° |
N3 | C4 | N9 | 126.1° | 134.2° |
O6 | C6 | C5 | 125.0° | 120.8° |
C6 | C5 | C4 | 119.1° | 118.6° |
C6 | C5 | N7 | 129.2° | 134.2° |
C5 | C4 | N9 | 105.4° | 106.1° |
C4 | C5 | N7 | 111.6° | 107.3° |
C4 | N9 | C1' | 126.1° | 126.3° |
C4 | N9 | C8 | 106.1° | 107.5° |
C1' | C2' | C3' | 103.8° | 104.0° |
C2' | C1' | N9 | 107.7° | 110.4° |
C2' | C1' | O4' | 107.4° | 104.8° |
C2' | C1' | H5 | 109.8° | 110.4° |
C1' | C2' | H8 | 110.9° | 110.6° |
C1' | C2' | H9 | 110.9° | 110.5° |
C2' | C3' | O3' | 112.3° | 110.5° |
C2' | C3' | C4' | 101.4° | 104.1° |
C3' | C2' | H8 | 110.8° | 110.5° |
C3' | C2' | H9 | 110.9° | 110.5° |
C2' | C3' | H12 | 109.4° | 110.5° |
N9 | C1' | O4' | 110.2° | 110.4° |
C1' | N9 | C8 | 127.5° | 126.2° |
N9 | C1' | H5 | 110.5° | 110.3° |
C1' | O4' | C4' | 110.0° | 105.2° |
O4' | C1' | H5 | 111.1° | 110.4° |
C5 | N7 | C8 | 103.3° | 109.3° |
N9 | C8 | N7 | 113.6° | 109.8° |
N9 | C8 | H4 | 123.2° | 125.1° |
O3' | C3' | C4' | 113.3° | 110.6° |
O3' | C3' | H12 | 110.6° | 110.5° |
C3' | O3' | H13 | 109.5° | 114.0° |
C3' | C4' | O4' | 104.7° | 104.8° |
C3' | C4' | C5' | 116.7° | 110.4° |
C4' | C3' | H12 | 109.5° | 110.5° |
C3' | C4' | H15 | 108.7° | 110.4° |
O4' | C4' | C5' | 107.6° | 110.3° |
O4' | C4' | H15 | 109.9° | 110.4° |
N7 | C8 | H4 | 123.2° | 125.1° |
C4' | C5' | O5' | 106.5° | 109.5° |
C5' | C4' | H15 | 109.1° | 110.3° |
C4' | C5' | H16 | 110.2° | 109.5° |
C4' | C5' | H17 | 110.2° | 109.5° |
O1B | PB | O3A | 106.6° | 109.4° |
O1B | PB | O2B | 114.2° | 109.4° |
O1B | PB | C3B | 110.0° | 109.5° |
C5' | O5' | PA | 121.6° | 123.0° |
O5' | C5' | H16 | 110.2° | 109.4° |
O5' | C5' | H17 | 110.2° | 109.4° |
O5' | PA | O3A | 102.1° | 109.5° |
O5' | PA | O2A | 107.6° | 109.5° |
O5' | PA | O1A | 112.8° | 109.4° |
O3A | PB | O2B | 113.8° | 109.5° |
O3A | PB | C3B | 101.1° | 109.5° |
PB | O3A | PA | 134.0° | 134.0° |
O2B | PB | C3B | 110.4° | 109.5° |
PB | O2B | H10 | 109.5° | 114.0° |
PB | C3B | CL1 | 112.0° | 109.5° |
PB | C3B | PG | 114.3° | 109.5° |
PB | C3B | H14 | 108.2° | 109.5° |
O3A | PA | O2A | 108.9° | 109.5° |
O3A | PA | O1A | 106.2° | 109.5° |
CL1 | C3B | PG | 104.6° | 109.5° |
CL1 | C3B | H14 | 109.0° | 109.5° |
O2A | PA | O1A | 118.0° | 109.5° |
PA | O1A | H6 | 109.5° | 114.0° |
C3B | PG | O3G | 107.6° | 109.5° |
C3B | PG | O1G | 104.9° | 109.5° |
C3B | PG | O2G | 113.3° | 109.5° |
PG | C3B | H14 | 108.5° | 109.4° |
O3G | PG | O1G | 108.9° | 109.4° |
O3G | PG | O2G | 102.4° | 109.5° |
O1G | PG | O2G | 119.4° | 109.5° |
PG | O1G | H7 | 109.5° | 114.0° |
PG | O2G | H11 | 109.5° | 114.0° |
H2 | N2 | H3 | 120.0° | 120.0° |
H8 | C2' | H9 | 109.5° | 110.5° |
H16 | C5' | H17 | 109.5° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
N2 | C2 | N1 | N3 | 173.5° | 179.9° |
N2 | C2 | N1 | C6 | 175.0° | 180.0° |
N2 | C2 | N3 | C4 | 175.9° | 180.0° |
N2 | C2 | N1 | H1 | 5.0° | 0.2° |
C2 | N2 | H2 | H3 | 180.0° | 180.0° |
C2 | N1 | C6 | H1 | 180.0° | 179.9° |
N1 | C2 | N3 | C4 | 2.5° | 0.1° |
C2 | N1 | C6 | O6 | 172.1° | 179.7° |
C2 | N1 | C6 | C5 | 0.5° | 0.1° |
N1 | C2 | N2 | H2 | 173.7° | 0.1° |
N1 | C2 | N2 | H3 | 6.3° | 180.0° |
N3 | C2 | N1 | C6 | 1.5° | 0.1° |
C2 | N3 | C4 | C5 | 1.8° | 0.0° |
C2 | N3 | C4 | N9 | 179.4° | 180.0° |
N3 | C2 | N1 | H1 | 178.4° | 179.7° |
N3 | C2 | N2 | H2 | 0.0° | 180.0° |
N3 | C2 | N2 | H3 | 180.0° | 0.1° |
N1 | C6 | O6 | C5 | 170.5° | 179.6° |
N1 | C6 | C5 | C4 | 1.2° | 0.1° |
N1 | C6 | C5 | N7 | 180.0° | 180.0° |
N3 | C4 | C5 | C6 | 0.1° | 0.0° |
N3 | C4 | C5 | N9 | 179.0° | 180.0° |
N3 | C4 | N9 | C1' | 6.6° | 0.1° |
N3 | C4 | C5 | N7 | 179.1° | 179.9° |
N3 | C4 | N9 | C8 | 179.9° | 180.0° |
O6 | C6 | C5 | C4 | 172.5° | 179.7° |
O6 | C6 | C5 | N7 | 8.7° | 0.4° |
O6 | C6 | N1 | H1 | 7.9° | 0.1° |
C6 | C5 | C4 | N7 | 179.0° | 179.9° |
C6 | C5 | C4 | N9 | 178.8° | 179.9° |
C6 | C5 | N7 | C8 | 179.8° | 180.0° |
C5 | C6 | N1 | H1 | 179.5° | 179.7° |
C5 | C4 | N9 | C1' | 174.4° | 180.0° |
C5 | C4 | N9 | C8 | 1.1° | 0.0° |
C4 | C5 | N7 | C8 | 1.0° | 0.1° |
C4 | N9 | C1' | C2' | 93.9° | 88.1° |
C4 | N9 | C1' | C8 | 171.8° | 179.9° |
C4 | N9 | C1' | O4' | 149.2° | 156.5° |
N9 | C4 | C5 | N7 | 0.1° | 0.0° |
C4 | N9 | C8 | N7 | 1.9° | 0.1° |
C4 | N9 | C8 | H4 | 178.1° | 179.9° |
C4 | N9 | C1' | H5 | 26.0° | 34.2° |
C1' | C2' | C3' | H8 | 119.1° | 118.7° |
C1' | C2' | C3' | H9 | 119.1° | 118.6° |
C2' | C1' | N9 | O4' | 116.9° | 115.4° |
C2' | C1' | N9 | H5 | 119.9° | 122.3° |
C2' | C1' | O4' | H5 | 120.1° | 118.9° |
C2' | C1' | N9 | C8 | 77.9° | 91.8° |
C1' | C2' | C3' | O3' | 152.5° | 118.7° |
C1' | C2' | C3' | C4' | 31.3° | 0.0° |
C2' | C1' | O4' | C4' | 5.5° | 40.5° |
C1' | C2' | H8 | H9 | 122.6° | 122.7° |
C1' | C2' | C3' | H12 | 84.3° | 118.6° |
C3' | C2' | C1' | N9 | 101.7° | 142.9° |
C3' | C2' | C1' | O4' | 17.0° | 24.0° |
C2' | C3' | O3' | C4' | 114.2° | 114.7° |
C2' | C3' | O3' | H12 | 122.5° | 122.6° |
C2' | C3' | C4' | H12 | 115.5° | 118.6° |
C2' | C3' | C4' | O4' | 35.0° | 24.0° |
C2' | C3' | C4' | C5' | 153.8° | 142.8° |
C3' | C2' | C1' | H5 | 137.9° | 94.9° |
C3' | C2' | H8 | H9 | 122.6° | 122.7° |
C2' | C3' | O3' | H13 | 139.6° | 61.4° |
C2' | C3' | C4' | H15 | 82.4° | 95.0° |
N9 | C1' | O4' | H5 | 122.9° | 122.2° |
N9 | C1' | O4' | C4' | 122.6° | 159.4° |
C1' | N9 | C8 | N7 | 175.0° | 180.0° |
C1' | N9 | C8 | H4 | 5.0° | 0.1° |
N9 | C1' | C2' | H8 | 139.3° | 98.5° |
N9 | C1' | C2' | H9 | 17.4° | 24.2° |
O4' | C1' | N9 | C8 | 39.0° | 23.6° |
C1' | O4' | C4' | C3' | 26.1° | 40.5° |
C1' | O4' | C4' | C5' | 150.8° | 159.3° |
O4' | C1' | C2' | H8 | 102.1° | 142.6° |
O4' | C1' | C2' | H9 | 136.1° | 94.7° |
C1' | O4' | C4' | H15 | 90.5° | 78.4° |
C5 | N7 | C8 | N9 | 1.7° | 0.1° |
C5 | N7 | C8 | H4 | 178.3° | 179.9° |
N9 | C8 | N7 | H4 | 180.0° | 179.8° |
C8 | N9 | C1' | H5 | 162.2° | 145.9° |
O3' | C3' | C4' | H12 | 124.0° | 122.7° |
O3' | C3' | C4' | O4' | 155.6° | 142.7° |
O3' | C3' | C4' | C5' | 85.7° | 98.5° |
O3' | C3' | C2' | H8 | 33.4° | 0.0° |
O3' | C3' | C2' | H9 | 88.4° | 122.6° |
O3' | C3' | C4' | H15 | 38.1° | 23.7° |
C3' | C4' | O4' | C5' | 124.7° | 118.9° |
C3' | C4' | O4' | H15 | 116.6° | 118.9° |
C3' | C4' | C5' | H15 | 123.6° | 122.3° |
C3' | C4' | C5' | O5' | 53.1° | 175.0° |
C4' | C3' | C2' | H8 | 87.8° | 118.7° |
C4' | C3' | C2' | H9 | 150.4° | 118.6° |
C4' | C3' | O3' | H13 | 106.2° | 176.0° |
C3' | C4' | C5' | H16 | 172.7° | 55.0° |
C3' | C4' | C5' | H17 | 66.4° | 65.0° |
O4' | C4' | C5' | H15 | 119.2° | 122.3° |
O4' | C4' | C5' | O5' | 64.0° | 69.6° |
C4' | O4' | C1' | H5 | 114.6° | 78.5° |
O4' | C4' | C3' | H12 | 80.5° | 94.6° |
O4' | C4' | C5' | H16 | 55.5° | 170.5° |
O4' | C4' | C5' | H17 | 176.4° | 50.4° |
C4' | C5' | O5' | H16 | 119.5° | 120.0° |
C4' | C5' | O5' | H17 | 119.6° | 120.0° |
C4' | C5' | O5' | PA | 126.7° | 179.9° |
C5' | C4' | C3' | H12 | 38.2° | 24.2° |
C4' | C5' | H16 | H17 | 121.4° | 120.1° |
O1B | PB | O3A | O2B | 126.8° | 120.0° |
O1B | PB | O3A | C3B | 114.9° | 120.0° |
O1B | PB | O2B | C3B | 124.5° | 120.0° |
O1B | PB | O3A | PA | 155.2° | 60.0° |
O1B | PB | C3B | CL1 | 20.1° | 60.0° |
O1B | PB | C3B | PG | 138.9° | 60.0° |
O1B | PB | O2B | H10 | 0.0° | 180.0° |
O1B | PB | C3B | H14 | 100.1° | 180.0° |
C5' | O5' | PA | O3A | 67.4° | 175.0° |
C5' | O5' | PA | O2A | 178.1° | 54.9° |
C5' | O5' | PA | O1A | 46.2° | 65.1° |
O5' | C5' | C4' | H15 | 176.8° | 52.8° |
O5' | C5' | H16 | H17 | 121.4° | 119.9° |
O5' | PA | O3A | PB | 115.2° | 165.0° |
O5' | PA | O3A | O2A | 113.5° | 120.1° |
O5' | PA | O3A | O1A | 118.4° | 119.9° |
O5' | PA | O2A | O1A | 129.0° | 119.9° |
O5' | PA | O1A | H6 | 126.5° | 60.0° |
PA | O5' | C5' | H16 | 113.8° | 59.9° |
PA | O5' | C5' | H17 | 7.1° | 60.1° |
O3A | PB | O2B | C3B | 112.8° | 120.0° |
O3A | PB | C3B | CL1 | 132.4° | 60.0° |
PB | O3A | PA | O2A | 131.3° | 45.0° |
PB | O3A | PA | O1A | 3.2° | 75.1° |
O3A | PB | C3B | PG | 108.8° | 180.0° |
O3A | PB | O2B | H10 | 122.7° | 60.0° |
O3A | PB | C3B | H14 | 12.3° | 60.1° |
O2B | PB | O3A | PA | 28.4° | 59.9° |
O2B | PB | C3B | CL1 | 106.8° | 180.0° |
O2B | PB | C3B | PG | 12.0° | 60.0° |
O2B | PB | C3B | H14 | 133.0° | 60.0° |
C3B | PB | O3A | PA | 89.9° | 180.0° |
PB | C3B | CL1 | PG | 124.4° | 120.0° |
PB | C3B | CL1 | H14 | 119.7° | 120.0° |
PB | C3B | PG | H14 | 120.9° | 120.0° |
PB | C3B | PG | O3G | 78.6° | 59.9° |
PB | C3B | PG | O1G | 37.2° | 60.0° |
PB | C3B | PG | O2G | 168.9° | 180.0° |
C3B | PB | O2B | H10 | 124.5° | 60.0° |
O3A | PA | O2A | O1A | 121.1° | 120.0° |
O3A | PA | O1A | H6 | 122.4° | 60.0° |
CL1 | C3B | PG | H14 | 116.3° | 120.0° |
CL1 | C3B | PG | O3G | 44.2° | 180.0° |
CL1 | C3B | PG | O1G | 160.0° | 60.0° |
CL1 | C3B | PG | O2G | 68.2° | 60.0° |
O2A | PA | O1A | H6 | 0.0° | 180.0° |
C3B | PG | O3G | O1G | 113.1° | 120.0° |
C3B | PG | O3G | O2G | 119.6° | 120.1° |
C3B | PG | O1G | O2G | 128.2° | 120.0° |
C3B | PG | O1G | H7 | 114.9° | 60.0° |
C3B | PG | O2G | H11 | 115.5° | 180.0° |
O3G | PG | O1G | O2G | 116.9° | 120.0° |
O3G | PG | O1G | H7 | 0.0° | 180.0° |
O3G | PG | O2G | H11 | 0.0° | 60.0° |
O3G | PG | C3B | H14 | 160.5° | 60.0° |
O1G | PG | O2G | H11 | 120.2° | 60.0° |
O1G | PG | C3B | H14 | 83.7° | 180.0° |
O2G | PG | O1G | H7 | 116.9° | 60.1° |
O2G | PG | C3B | H14 | 48.1° | 60.0° |
H5 | C1' | C2' | H8 | 18.9° | 23.7° |
H5 | C1' | C2' | H9 | 103.0° | 146.4° |
H8 | C2' | C3' | H12 | 156.6° | 122.7° |
H9 | C2' | C3' | H12 | 34.8° | 0.0° |
H12 | C3' | O3' | H13 | 17.1° | 61.3° |
H12 | C3' | C4' | H15 | 162.1° | 146.4° |
H15 | C4' | C5' | H16 | 63.7° | 67.2° |
H15 | C4' | C5' | H17 | 57.2° | 172.7° |