GPX

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
P1	O11	sing	1.61Å	1.48Å
P1	O21	doub	1.48Å	1.48Å
P1	O3'	sing	1.63Å	1.62Å
P1	O2'	sing	1.63Å	1.61Å
N9	C8	sing	1.36Å	1.36Å	Aromatic
N9	C4	sing	1.37Å	1.39Å	Aromatic
N9	C1'	sing	1.46Å	1.38Å
C8	N7	doub	1.30Å	1.30Å	Aromatic
C8	H8	sing	1.08Å	1.10Å
N7	C5	sing	1.36Å	1.40Å	Aromatic
C5	C6	sing	1.41Å	1.37Å	Aromatic
C5	C4	doub	1.40Å	1.36Å	Aromatic
C6	O6	doub	1.22Å	1.23Å
C6	N1	sing	1.35Å	1.38Å	Aromatic
N1	C2	sing	1.36Å	1.37Å	Aromatic
N1	HN1	sing	0.97Å	1.02Å
C2	N2	sing	1.37Å	1.33Å
C2	N3	doub	1.31Å	1.31Å	Aromatic
N2	HN21	sing	0.97Å	1.02Å
N2	HN22	sing	0.97Å	1.02Å
N3	C4	sing	1.34Å	1.33Å	Aromatic
O11	HO1	sing	0.97Å	0.95Å
O3'	C3'	sing	1.44Å	1.42Å
PA	O1A	doub	1.48Å	1.48Å
PA	O2A	sing	1.61Å	1.48Å
PA	O3A	sing	1.61Å	1.62Å
PA	O5'	sing	1.61Å	1.62Å
O2A	HOA2	sing	0.97Å	0.95Å
O3A	PB	sing	1.61Å	1.60Å
O5'	C5'	sing	1.43Å	1.48Å
PB	O1B	doub	1.48Å	1.49Å
PB	O2B	sing	1.61Å	1.48Å
PB	O3B	sing	1.61Å	1.48Å
O2B	HOB2	sing	0.97Å	0.95Å
O3B	HOB3	sing	0.97Å	0.95Å
C5'	C4'	sing	1.53Å	1.57Å
C5'	H5'1	sing	1.09Å	1.11Å
C5'	H5'2	sing	1.09Å	1.12Å
C4'	O4'	sing	1.44Å	1.41Å
C4'	C3'	sing	1.54Å	1.49Å
C4'	H4'	sing	1.09Å	1.11Å
O4'	C1'	sing	1.44Å	1.41Å
C1'	C2'	sing	1.54Å	1.52Å
C1'	H1'	sing	1.09Å	1.11Å
C2'	O2'	sing	1.45Å	1.44Å
C2'	C3'	sing	1.55Å	1.53Å
C2'	H2'	sing	1.09Å	1.12Å
C3'	H3'	sing	1.09Å	1.12Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O11	P1	O21	109.2°	112.3°
O11	P1	O3'	112.6°	110.8°
O11	P1	O2'	107.3°	110.9°
P1	O11	HO1	109.2°	106.8°
O21	P1	O3'	110.6°	110.9°
O21	P1	O2'	111.0°	110.9°
O3'	P1	O2'	106.1°	100.5°
P1	O3'	C3'	102.2°	103.3°
P1	O2'	C2'	104.5°	103.4°
C8	N9	C4	103.5°	107.5°
C8	N9	C1'	128.6°	126.2°
N9	C8	N7	116.2°	109.8°
N9	C8	H8	124.0°	125.1°
C4	N9	C1'	127.4°	126.3°
N9	C4	C5	107.2°	106.1°
N9	C4	N3	125.0°	134.2°
N9	C1'	O4'	104.9°	110.4°
N9	C1'	C2'	116.2°	110.4°
N9	C1'	H1'	106.5°	110.3°
N7	C8	H8	119.9°	125.1°
C8	N7	C5	102.9°	109.3°
N7	C5	C6	129.7°	134.1°
N7	C5	C4	110.2°	107.3°
C6	C5	C4	120.0°	118.6°
C5	C6	O6	128.6°	120.9°
C5	C6	N1	112.5°	118.4°
C5	C4	N3	127.8°	119.6°
O6	C6	N1	118.9°	120.7°
C6	N1	C2	123.2°	120.3°
C6	N1	HN1	118.7°	119.9°
C2	N1	HN1	118.1°	119.8°
N1	C2	N2	118.3°	119.0°
N1	C2	N3	124.2°	121.9°
N2	C2	N3	117.5°	119.1°
C2	N2	HN21	118.2°	120.0°
C2	N2	HN22	109.0°	120.0°
C2	N3	C4	112.3°	121.2°
HN21	N2	HN22	109.1°	120.0°
O3'	C3'	C4'	117.5°	108.8°
O3'	C3'	C2'	112.4°	110.0°
O3'	C3'	H3'	99.3°	111.2°
O1A	PA	O2A	109.4°	109.4°
O1A	PA	O3A	113.8°	109.4°
O1A	PA	O5'	115.6°	109.5°
O2A	PA	O3A	108.4°	109.5°
O2A	PA	O5'	107.2°	109.5°
PA	O2A	HOA2	109.4°	106.8°
O3A	PA	O5'	101.9°	109.5°
PA	O3A	PB	126.8°	106.8°
PA	O5'	C5'	107.4°	106.8°
O3A	PB	O1B	115.8°	109.4°
O3A	PB	O2B	107.2°	109.5°
O3A	PB	O3B	105.5°	109.5°
O5'	C5'	C4'	115.2°	109.5°
O5'	C5'	H5'1	110.1°	109.4°
O5'	C5'	H5'2	110.1°	109.5°
O1B	PB	O2B	109.6°	109.5°
O1B	PB	O3B	108.7°	109.5°
O2B	PB	O3B	109.9°	109.4°
PB	O2B	HOB2	107.1°	106.8°
PB	O3B	HOB3	105.5°	106.8°
C4'	C5'	H5'1	110.1°	109.5°
C4'	C5'	H5'2	110.1°	109.5°
C5'	C4'	O4'	112.6°	110.4°
C5'	C4'	C3'	109.8°	110.5°
C5'	C4'	H4'	105.8°	110.3°
H5'1	C5'	H5'2	100.1°	109.4°
O4'	C4'	C3'	105.2°	104.8°
O4'	C4'	H4'	110.4°	110.4°
C4'	O4'	C1'	111.7°	105.3°
C3'	C4'	H4'	113.2°	110.4°
C4'	C3'	C2'	100.5°	104.1°
C4'	C3'	H3'	111.4°	111.2°
O4'	C1'	C2'	104.0°	104.8°
O4'	C1'	H1'	118.3°	110.4°
C2'	C1'	H1'	107.4°	110.3°
C1'	C2'	O2'	112.2°	109.0°
C1'	C2'	C3'	102.1°	104.1°
C1'	C2'	H2'	111.6°	111.0°
O2'	C2'	C3'	106.6°	109.0°
O2'	C2'	H2'	107.5°	111.1°
C3'	C2'	H2'	116.8°	112.3°
C2'	C3'	H3'	116.6°	111.3°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O11	P1	O21	O3'	124.4°	124.6°
O11	P1	O21	O2'	118.1°	124.6°
O11	P1	O3'	O2'	117.1°	117.2°
O11	P1	O3'	C3'	111.4°	82.5°
O11	P1	O2'	C2'	132.8°	82.1°
O21	P1	O3'	O2'	120.5°	117.4°
O21	P1	O11	HO1	180.0°	55.4°
O21	P1	O3'	C3'	126.2°	152.1°
O21	P1	O2'	C2'	107.9°	152.4°
O3'	P1	O11	HO1	56.8°	180.0°
P1	O3'	C3'	C4'	137.5°	136.0°
O3'	P1	O2'	C2'	12.3°	35.0°
P1	O3'	C3'	C2'	21.6°	22.5°
P1	O3'	C3'	H3'	102.4°	101.2°
O2'	P1	O11	HO1	59.5°	69.3°
O2'	P1	O3'	C3'	5.7°	34.7°
P1	O2'	C2'	C1'	86.4°	136.1°
P1	O2'	C2'	C3'	24.6°	23.1°
P1	O2'	C2'	H2'	150.5°	101.2°
C8	N9	C4	C1'	172.4°	180.0°
N9	C8	N7	H8	180.0°	179.9°
N9	C8	N7	C5	0.2°	0.0°
C8	N9	C4	C5	0.2°	0.0°
C8	N9	C4	N3	179.6°	180.0°
C8	N9	C1'	O4'	55.3°	27.0°
C8	N9	C1'	C2'	58.9°	88.5°
C8	N9	C1'	H1'	178.5°	149.3°
C4	N9	C8	N7	0.2°	0.0°
C4	N9	C8	H8	179.8°	179.9°
N9	C4	C5	N7	0.1°	0.0°
N9	C4	C5	C6	179.9°	180.0°
N9	C4	C5	N3	179.8°	180.0°
N9	C4	N3	C2	179.6°	180.0°
C4	N9	C1'	O4'	115.3°	153.0°
C4	N9	C1'	C2'	130.5°	91.5°
C4	N9	C1'	H1'	10.9°	30.7°
C1'	N9	C8	N7	172.6°	180.0°
C1'	N9	C8	H8	7.5°	0.1°
C1'	N9	C4	C5	172.6°	180.0°
C1'	N9	C4	N3	7.2°	0.0°
N9	C1'	O4'	C4'	130.6°	159.3°
N9	C1'	O4'	C2'	122.5°	118.9°
N9	C1'	O4'	H1'	118.5°	122.3°
N9	C1'	C2'	H1'	119.1°	122.2°
N9	C1'	C2'	O2'	101.7°	101.1°
N9	C1'	C2'	C3'	144.6°	142.7°
N9	C1'	C2'	H2'	19.1°	21.7°
C8	N7	C5	C6	180.0°	180.0°
C8	N7	C5	C4	0.1°	0.1°
H8	C8	N7	C5	179.8°	180.0°
N7	C5	C6	C4	180.0°	179.9°
N7	C5	C6	O6	0.8°	0.0°
N7	C5	C6	N1	179.8°	179.7°
N7	C5	C4	N3	179.7°	180.0°
C5	C6	O6	N1	179.0°	179.7°
C5	C6	N1	C2	0.3°	0.6°
C5	C6	N1	HN1	179.7°	179.9°
C6	C5	C4	N3	0.3°	0.0°
C4	C5	C6	O6	179.2°	180.0°
C4	C5	C6	N1	0.2°	0.3°
C5	C4	N3	C2	0.7°	0.0°
O6	C6	N1	C2	179.4°	179.7°
O6	C6	N1	HN1	0.6°	0.4°
C6	N1	C2	HN1	180.0°	179.4°
C6	N1	C2	N2	179.3°	179.7°
C6	N1	C2	N3	0.1°	0.6°
N1	C2	N2	N3	179.5°	179.8°
N1	C2	N2	HN21	180.0°	179.8°
N1	C2	N2	HN22	54.7°	0.6°
N1	C2	N3	C4	0.6°	0.3°
HN1	N1	C2	N2	0.7°	0.3°
HN1	N1	C2	N3	179.9°	180.0°
C2	N2	HN21	HN22	125.2°	179.6°
N2	C2	N3	C4	178.9°	180.0°
N3	C2	N2	HN21	0.5°	0.0°
N3	C2	N2	HN22	124.7°	179.7°
O3'	C3'	C4'	C5'	151.8°	99.8°
O3'	C3'	C4'	O4'	86.8°	141.3°
O3'	C3'	C4'	C2'	122.2°	117.3°
O3'	C3'	C4'	H3'	113.6°	122.8°
O3'	C3'	C4'	H4'	33.8°	22.5°
O3'	C3'	C2'	C1'	86.2°	116.6°
O3'	C3'	C2'	O2'	31.6°	0.4°
O3'	C3'	C2'	H3'	113.7°	123.6°
O3'	C3'	C2'	H2'	151.7°	123.2°
O1A	PA	O2A	O3A	124.6°	119.9°
O1A	PA	O2A	O5'	126.1°	120.0°
O1A	PA	O3A	O5'	125.1°	120.0°
O1A	PA	O2A	HOA2	180.0°	179.9°
O1A	PA	O3A	PB	30.8°	60.0°
O1A	PA	O5'	C5'	155.9°	60.0°
O2A	PA	O3A	O5'	112.9°	120.0°
O2A	PA	O3A	PB	152.8°	60.0°
O2A	PA	O5'	C5'	33.6°	60.0°
O3A	PA	O2A	HOA2	55.4°	60.0°
O3A	PA	O5'	C5'	80.2°	180.0°
PA	O3A	PB	O1B	89.1°	60.0°
PA	O3A	PB	O2B	33.6°	180.0°
PA	O3A	PB	O3B	150.7°	60.0°
O5'	PA	O2A	HOA2	53.9°	60.1°
O5'	PA	O3A	PB	94.3°	180.0°
PA	O5'	C5'	C4'	88.1°	180.0°
PA	O5'	C5'	H5'1	37.2°	60.0°
PA	O5'	C5'	H5'2	146.6°	60.0°
O3A	PB	O1B	O2B	121.4°	120.0°
O3A	PB	O1B	O3B	118.5°	120.0°
O3A	PB	O2B	O3B	114.2°	120.0°
O3A	PB	O2B	HOB2	180.0°	180.0°
O3A	PB	O3B	HOB3	179.9°	59.9°
O5'	C5'	C4'	H5'1	125.3°	120.0°
O5'	C5'	C4'	H5'2	125.3°	120.1°
O5'	C5'	H5'1	H5'2	116.0°	120.0°
O5'	C5'	C4'	O4'	164.8°	61.5°
O5'	C5'	C4'	C3'	78.4°	176.9°
O5'	C5'	C4'	H4'	44.1°	60.8°
O1B	PB	O2B	O3B	119.4°	120.0°
O1B	PB	O2B	HOB2	53.5°	60.0°
O1B	PB	O3B	HOB3	55.2°	179.9°
O2B	PB	O3B	HOB3	64.8°	60.1°
O3B	PB	O2B	HOB2	65.9°	60.0°
C4'	C5'	H5'1	H5'2	115.9°	120.0°
C5'	C4'	O4'	C3'	119.6°	118.9°
C5'	C4'	O4'	H4'	118.0°	122.2°
C5'	C4'	C3'	H4'	118.0°	122.3°
C5'	C4'	O4'	C1'	101.7°	159.4°
C5'	C4'	C3'	C2'	86.0°	142.9°
C5'	C4'	C3'	H3'	38.2°	23.0°
H5'1	C5'	C4'	O4'	39.5°	178.5°
H5'1	C5'	C4'	C3'	156.4°	63.1°
H5'1	C5'	C4'	H4'	81.2°	59.2°
H5'2	C5'	C4'	O4'	70.0°	58.6°
H5'2	C5'	C4'	C3'	46.9°	56.9°
H5'2	C5'	C4'	H4'	169.4°	179.2°
O4'	C4'	C3'	H4'	120.6°	118.8°
C4'	O4'	C1'	C2'	8.1°	40.4°
C4'	O4'	C1'	H1'	110.8°	78.4°
O4'	C4'	C3'	C2'	35.4°	24.1°
O4'	C4'	C3'	H3'	159.6°	95.9°
C3'	C4'	O4'	C1'	17.8°	40.5°
C4'	C3'	C2'	C1'	39.5°	0.2°
C4'	C3'	C2'	O2'	157.4°	116.0°
C4'	C3'	C2'	H3'	120.5°	119.9°
C4'	C3'	C2'	H2'	82.5°	120.4°
H4'	C4'	O4'	C1'	140.2°	78.3°
H4'	C4'	C3'	C2'	156.0°	94.8°
H4'	C4'	C3'	H3'	79.8°	145.3°
O4'	C1'	C2'	H1'	126.1°	118.8°
O4'	C1'	C2'	O2'	143.6°	139.9°
O4'	C1'	C2'	C3'	29.8°	23.8°
O4'	C1'	C2'	H2'	95.7°	97.3°
C1'	C2'	O2'	C3'	111.0°	113.0°
C1'	C2'	O2'	H2'	123.1°	122.7°
C1'	C2'	C3'	H2'	122.1°	120.2°
C1'	C2'	C3'	H3'	160.0°	119.7°
H1'	C1'	C2'	O2'	17.5°	21.1°
H1'	C1'	C2'	C3'	96.3°	95.0°
H1'	C1'	C2'	H2'	138.2°	143.9°
O2'	C2'	C3'	H2'	120.1°	123.6°
O2'	C2'	C3'	H3'	82.1°	124.0°
H2'	C2'	C3'	H3'	38.0°	0.5°

Definition date:	1999-07-08
Last modified:	2011-06-04
Release status:	REL
Processing site:	RCSB
Derived from:	1CH8