GPP
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
C1 | O1 | sing | 1.43Å | 1.42Å | |
C1 | C2 | sing | 1.51Å | 1.51Å | |
C1 | H11 | sing | 1.09Å | 1.11Å | |
C1 | H12 | sing | 1.09Å | 1.12Å | |
O1 | PA | sing | 1.61Å | 1.63Å | |
C2 | C3 | doub | 1.31Å | 1.34Å | |
C2 | H2 | sing | 1.08Å | 1.10Å | |
C3 | C4 | sing | 1.51Å | 1.52Å | |
C3 | C5 | sing | 1.51Å | 1.54Å | |
C4 | H41 | sing | 1.09Å | 1.11Å | |
C4 | H42 | sing | 1.09Å | 1.11Å | |
C4 | H43 | sing | 1.09Å | 1.12Å | |
C5 | C6 | sing | 1.53Å | 1.53Å | |
C5 | H51 | sing | 1.09Å | 1.12Å | |
C5 | H52 | sing | 1.09Å | 1.12Å | |
C6 | C7 | sing | 1.51Å | 1.51Å | |
C6 | H61 | sing | 1.09Å | 1.11Å | |
C6 | H62 | sing | 1.09Å | 1.11Å | |
C7 | C8 | doub | 1.31Å | 1.33Å | |
C7 | H7 | sing | 1.08Å | 1.10Å | |
C8 | C9 | sing | 1.51Å | 1.53Å | |
C8 | C10 | sing | 1.51Å | 1.54Å | |
C9 | H91 | sing | 1.09Å | 1.11Å | |
C9 | H92 | sing | 1.09Å | 1.11Å | |
C9 | H93 | sing | 1.09Å | 1.11Å | |
C10 | H101 | sing | 1.09Å | 1.11Å | |
C10 | H102 | sing | 1.09Å | 1.12Å | |
C10 | H103 | sing | 1.09Å | 1.11Å | |
PA | O1A | doub | 1.48Å | 1.65Å | |
PA | O2A | sing | 1.61Å | 1.58Å | |
PA | O3A | sing | 1.61Å | 1.56Å | |
O2A | HOA2 | sing | 0.97Å | 0.95Å | |
O3A | PB | sing | 1.61Å | 1.56Å | |
PB | O1B | doub | 1.48Å | 1.61Å | |
PB | O2B | sing | 1.61Å | 1.59Å | |
PB | O3B | sing | 1.61Å | 1.59Å | |
O2B | HOB2 | sing | 0.97Å | 0.95Å | |
O3B | HOB3 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O1 | C1 | C2 | 113.5° | 109.5° |
O1 | C1 | H11 | 110.8° | 109.5° |
O1 | C1 | H12 | 110.7° | 109.5° |
C1 | O1 | PA | 129.9° | 106.8° |
C2 | C1 | H11 | 110.7° | 109.5° |
C2 | C1 | H12 | 110.7° | 109.4° |
C1 | C2 | C3 | 121.4° | 120.0° |
C1 | C2 | H2 | 125.3° | 120.0° |
H11 | C1 | H12 | 99.6° | 109.4° |
O1 | PA | O1A | 107.9° | 109.4° |
O1 | PA | O2A | 117.9° | 109.5° |
O1 | PA | O3A | 106.4° | 109.5° |
C3 | C2 | H2 | 113.4° | 120.0° |
C2 | C3 | C4 | 116.2° | 120.0° |
C2 | C3 | C5 | 120.3° | 120.0° |
C4 | C3 | C5 | 123.4° | 120.0° |
C3 | C4 | H41 | 116.3° | 109.5° |
C3 | C4 | H42 | 109.8° | 109.5° |
C3 | C4 | H43 | 109.8° | 109.5° |
C3 | C5 | C6 | 124.4° | 109.5° |
C3 | C5 | H51 | 106.9° | 109.4° |
C3 | C5 | H52 | 106.9° | 109.6° |
H41 | C4 | H42 | 109.8° | 109.4° |
H41 | C4 | H43 | 109.7° | 109.4° |
H42 | C4 | H43 | 100.5° | 109.5° |
C6 | C5 | H51 | 106.9° | 109.4° |
C6 | C5 | H52 | 107.0° | 109.5° |
C5 | C6 | C7 | 110.6° | 109.5° |
C5 | C6 | H61 | 111.8° | 109.4° |
C5 | C6 | H62 | 111.8° | 109.5° |
H51 | C5 | H52 | 102.7° | 109.4° |
C7 | C6 | H61 | 111.7° | 109.5° |
C7 | C6 | H62 | 111.8° | 109.5° |
C6 | C7 | C8 | 118.0° | 120.0° |
C6 | C7 | H7 | 126.7° | 120.0° |
H61 | C6 | H62 | 98.6° | 109.5° |
C8 | C7 | H7 | 115.2° | 120.0° |
C7 | C8 | C9 | 115.1° | 120.0° |
C7 | C8 | C10 | 115.3° | 120.0° |
C9 | C8 | C10 | 129.5° | 120.0° |
C8 | C9 | H91 | 115.1° | 109.5° |
C8 | C9 | H92 | 110.1° | 109.5° |
C8 | C9 | H93 | 110.1° | 109.4° |
C8 | C10 | H101 | 115.3° | 109.5° |
C8 | C10 | H102 | 110.1° | 109.5° |
C8 | C10 | H103 | 110.0° | 109.5° |
H91 | C9 | H92 | 110.2° | 109.5° |
H91 | C9 | H93 | 110.2° | 109.4° |
H92 | C9 | H93 | 100.1° | 109.4° |
H101 | C10 | H102 | 110.1° | 109.4° |
H101 | C10 | H103 | 110.2° | 109.4° |
H102 | C10 | H103 | 100.1° | 109.5° |
O1A | PA | O2A | 113.7° | 109.5° |
O1A | PA | O3A | 106.5° | 109.5° |
O2A | PA | O3A | 103.4° | 109.5° |
PA | O2A | HOA2 | 118.0° | 106.8° |
PA | O3A | PB | 123.3° | 106.8° |
O3A | PB | O1B | 155.3° | 109.5° |
O3A | PB | O2B | 89.7° | 109.5° |
O3A | PB | O3B | 104.6° | 109.5° |
O1B | PB | O2B | 98.4° | 109.5° |
O1B | PB | O3B | 94.6° | 109.5° |
O2B | PB | O3B | 110.0° | 109.4° |
PB | O2B | HOB2 | 89.6° | 106.8° |
PB | O3B | HOB3 | 104.6° | 106.9° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O1 | C1 | C2 | H11 | 125.3° | 120.1° |
O1 | C1 | C2 | H12 | 125.2° | 120.0° |
O1 | C1 | H11 | H12 | 116.6° | 120.0° |
O1 | C1 | C2 | C3 | 143.8° | 135.4° |
O1 | C1 | C2 | H2 | 36.3° | 44.6° |
C1 | O1 | PA | O1A | 106.7° | 60.0° |
C1 | O1 | PA | O2A | 23.9° | 60.0° |
C1 | O1 | PA | O3A | 139.3° | 180.0° |
C2 | C1 | H11 | H12 | 116.5° | 119.9° |
C2 | C1 | O1 | PA | 116.7° | 180.0° |
C1 | C2 | C3 | H2 | 179.9° | 180.0° |
C1 | C2 | C3 | C4 | 0.5° | 5.7° |
C1 | C2 | C3 | C5 | 177.2° | 174.4° |
H11 | C1 | O1 | PA | 118.0° | 60.0° |
H11 | C1 | C2 | C3 | 18.4° | 104.5° |
H11 | C1 | C2 | H2 | 161.6° | 75.5° |
H12 | C1 | O1 | PA | 8.5° | 60.0° |
H12 | C1 | C2 | C3 | 91.0° | 15.4° |
H12 | C1 | C2 | H2 | 88.9° | 164.6° |
O1 | PA | O1A | O2A | 132.8° | 120.0° |
O1 | PA | O1A | O3A | 113.9° | 120.0° |
O1 | PA | O2A | O3A | 117.0° | 120.0° |
O1 | PA | O2A | HOA2 | 179.9° | 60.0° |
O1 | PA | O3A | PB | 64.1° | 179.9° |
C2 | C3 | C4 | C5 | 176.6° | 179.9° |
C2 | C3 | C4 | H41 | 180.0° | 54.8° |
C2 | C3 | C4 | H42 | 54.7° | 174.8° |
C2 | C3 | C4 | H43 | 54.8° | 65.2° |
C2 | C3 | C5 | C6 | 58.6° | 90.0° |
C2 | C3 | C5 | H51 | 176.1° | 30.0° |
C2 | C3 | C5 | H52 | 66.7° | 149.9° |
H2 | C2 | C3 | C4 | 179.4° | 174.3° |
H2 | C2 | C3 | C5 | 2.7° | 5.6° |
C3 | C4 | H41 | H42 | 125.3° | 120.0° |
C3 | C4 | H41 | H43 | 125.2° | 120.0° |
C3 | C4 | H42 | H43 | 115.6° | 120.0° |
C4 | C3 | C5 | C6 | 125.0° | 90.1° |
C4 | C3 | C5 | H51 | 0.3° | 150.0° |
C4 | C3 | C5 | H52 | 109.7° | 30.0° |
C5 | C3 | C4 | H41 | 3.4° | 125.1° |
C5 | C3 | C4 | H42 | 128.7° | 5.1° |
C5 | C3 | C4 | H43 | 121.8° | 114.9° |
C3 | C5 | C6 | H51 | 125.3° | 120.0° |
C3 | C5 | C6 | H52 | 125.3° | 120.1° |
C3 | C5 | H51 | H52 | 112.3° | 120.1° |
C3 | C5 | C6 | C7 | 177.2° | 180.0° |
C3 | C5 | C6 | H61 | 52.0° | 60.0° |
C3 | C5 | C6 | H62 | 57.5° | 59.9° |
H41 | C4 | H42 | H43 | 115.5° | 119.9° |
C6 | C5 | H51 | H52 | 112.4° | 120.0° |
C5 | C6 | C7 | H61 | 125.2° | 119.9° |
C5 | C6 | C7 | H62 | 125.3° | 120.0° |
C5 | C6 | H61 | H62 | 117.7° | 119.9° |
C5 | C6 | C7 | C8 | 171.4° | 125.8° |
C5 | C6 | C7 | H7 | 8.7° | 54.4° |
H51 | C5 | C6 | C7 | 57.5° | 60.0° |
H51 | C5 | C6 | H61 | 177.3° | 180.0° |
H51 | C5 | C6 | H62 | 67.8° | 60.0° |
H52 | C5 | C6 | C7 | 51.9° | 59.9° |
H52 | C5 | C6 | H61 | 73.3° | 60.1° |
H52 | C5 | C6 | H62 | 177.2° | 180.0° |
C7 | C6 | H61 | H62 | 117.7° | 120.1° |
C6 | C7 | C8 | H7 | 180.0° | 179.9° |
C6 | C7 | C8 | C9 | 0.3° | 174.4° |
C6 | C7 | C8 | C10 | 180.0° | 5.6° |
H61 | C6 | C7 | C8 | 63.4° | 114.3° |
H61 | C6 | C7 | H7 | 116.6° | 65.6° |
H62 | C6 | C7 | C8 | 46.1° | 5.8° |
H62 | C6 | C7 | H7 | 133.9° | 174.4° |
C7 | C8 | C9 | C10 | 179.7° | 180.0° |
C7 | C8 | C9 | H91 | 180.0° | 179.9° |
C7 | C8 | C9 | H92 | 54.7° | 60.0° |
C7 | C8 | C9 | H93 | 54.7° | 60.0° |
C7 | C8 | C10 | H101 | 179.9° | 54.9° |
C7 | C8 | C10 | H102 | 54.7° | 174.9° |
C7 | C8 | C10 | H103 | 54.7° | 65.0° |
H7 | C7 | C8 | C9 | 179.7° | 5.7° |
H7 | C7 | C8 | C10 | 0.0° | 174.3° |
C8 | C9 | H91 | H92 | 125.3° | 120.1° |
C8 | C9 | H91 | H93 | 125.2° | 119.9° |
C8 | C9 | H92 | H93 | 115.9° | 119.9° |
C9 | C8 | C10 | H101 | 0.3° | 125.1° |
C9 | C8 | C10 | H102 | 125.0° | 5.1° |
C9 | C8 | C10 | H103 | 125.6° | 115.0° |
C10 | C8 | C9 | H91 | 0.3° | 0.1° |
C10 | C8 | C9 | H92 | 125.6° | 120.0° |
C10 | C8 | C9 | H93 | 125.0° | 120.0° |
C8 | C10 | H101 | H102 | 125.3° | 120.0° |
C8 | C10 | H101 | H103 | 125.3° | 120.0° |
C8 | C10 | H102 | H103 | 115.8° | 120.1° |
H91 | C9 | H92 | H93 | 116.0° | 120.0° |
H101 | C10 | H102 | H103 | 115.9° | 119.9° |
O1A | PA | O2A | O3A | 115.1° | 120.0° |
O1A | PA | O2A | HOA2 | 52.1° | 179.9° |
O1A | PA | O3A | PB | 179.1° | 60.0° |
O2A | PA | O3A | PB | 60.8° | 60.0° |
O3A | PA | O2A | HOA2 | 63.0° | 60.0° |
PA | O3A | PB | O1B | 18.5° | 60.0° |
PA | O3A | PB | O2B | 128.2° | 180.0° |
PA | O3A | PB | O3B | 121.2° | 60.0° |
O3A | PB | O1B | O2B | 107.9° | 120.0° |
O3A | PB | O1B | O3B | 141.1° | 120.1° |
O3A | PB | O2B | O3B | 105.4° | 120.1° |
O3A | PB | O2B | HOB2 | 180.0° | 179.9° |
O3A | PB | O3B | HOB3 | 179.9° | 59.9° |
O1B | PB | O2B | O3B | 98.0° | 120.0° |
O1B | PB | O2B | HOB2 | 23.4° | 59.9° |
O1B | PB | O3B | HOB3 | 15.7° | 180.0° |
O2B | PB | O3B | HOB3 | 85.0° | 60.1° |
O3B | PB | O2B | HOB2 | 74.6° | 60.0° |